Wall clock time and date at job start Mon Mar 30 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30920 * 1 3 3 Si 1.86799 * 120.00069 * 2 1 4 4 H 1.48502 * 109.47199 * 275.42041 * 3 2 1 5 5 H 1.48498 * 109.47242 * 35.41792 * 3 2 1 6 6 H 1.48494 * 109.47438 * 155.41811 * 3 2 1 7 7 C 1.39821 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00626 * 341.69699 * 7 2 1 9 9 C 1.41175 * 119.99846 * 161.69506 * 7 2 1 10 10 C 1.40997 * 120.08171 * 150.10960 * 9 7 2 11 11 C 1.36306 * 120.26361 * 180.02562 * 10 9 7 12 12 C 1.39402 * 120.43357 * 0.25060 * 11 10 9 13 13 N 1.38559 * 119.92365 * 179.72628 * 12 11 10 14 14 C 1.40834 * 120.15525 * 359.45225 * 12 11 10 15 15 C 1.47697 * 120.13220 * 180.27576 * 14 12 11 16 16 C 1.31185 * 118.08191 * 285.29129 * 15 14 12 17 17 C 1.50082 * 123.84381 * 180.45400 * 16 15 14 18 18 C 1.53015 * 110.13656 * 342.81515 * 17 16 15 19 19 C 1.53364 * 108.49436 * 49.69753 * 18 17 16 20 20 C 1.50086 * 118.08065 * 105.03167 * 15 14 12 21 21 C 1.38733 * 119.73280 * 0.56565 * 14 12 11 22 22 H 0.96998 * 120.00242 * 359.97438 * 1 2 3 23 23 H 1.08001 * 119.87201 * 359.96858 * 10 9 7 24 24 H 1.08000 * 119.78354 * 179.97438 * 11 10 9 25 25 H 0.97000 * 120.00179 * 0.02562 * 13 12 11 26 26 H 0.97001 * 120.00232 * 180.02562 * 13 12 11 27 27 H 1.08005 * 118.07481 * 0.43489 * 16 15 14 28 28 H 1.08998 * 109.36313 * 103.01983 * 17 16 15 29 29 H 1.09001 * 109.36391 * 222.61378 * 17 16 15 30 30 H 1.09000 * 109.63124 * 169.39666 * 18 17 16 31 31 H 1.08995 * 109.63192 * 289.99102 * 18 17 16 32 32 H 1.08998 * 109.63710 * 51.77085 * 19 18 17 33 33 H 1.08997 * 109.63546 * 172.36784 * 19 18 17 34 34 H 1.08999 * 109.36173 * 283.04046 * 20 15 14 35 35 H 1.09006 * 109.35955 * 42.63248 * 20 15 14 36 36 H 1.08004 * 120.21105 * 179.68817 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 2.3762 2.1125 -1.3938 5 1 1.5026 2.6169 0.8114 6 1 3.5933 1.4099 0.5824 7 6 2.0083 -1.2109 -0.0005 8 1 1.5094 -2.1227 0.2927 9 6 3.3665 -1.2416 -0.3846 10 6 4.2350 -2.2062 0.1661 11 6 5.5471 -2.2389 -0.2016 12 6 6.0459 -1.3173 -1.1209 13 7 7.3828 -1.3566 -1.4829 14 6 5.1930 -0.3501 -1.6869 15 6 5.7207 0.6222 -2.6654 16 6 6.4643 1.6063 -2.2187 17 6 7.0578 2.6701 -3.0954 18 6 7.0408 2.2181 -4.5571 19 6 5.6315 1.7163 -4.8948 20 6 5.3798 0.4231 -4.1135 21 6 3.8565 -0.3104 -1.3171 22 1 -0.4850 0.8400 0.0004 23 1 3.8594 -2.9215 0.8829 24 1 6.2056 -2.9808 0.2254 25 1 7.9704 -2.0250 -1.0971 26 1 7.7312 -0.7156 -2.1222 27 1 6.6606 1.6540 -1.1577 28 1 6.4777 3.5873 -2.9940 29 1 8.0862 2.8597 -2.7878 30 1 7.2950 3.0584 -5.2032 31 1 7.7605 1.4121 -4.6996 32 1 4.8966 2.4693 -4.6100 33 1 5.5601 1.5168 -5.9640 34 1 5.9967 -0.3767 -4.5233 35 1 4.3288 0.1481 -4.2027 36 1 3.1966 0.4313 -1.7425 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000203023209.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:45 Heat of formation + Delta-G solvation = -6.409059 kcal Electronic energy + Delta-G solvation = -17351.782790 eV Core-core repulsion = 14798.562393 eV Total energy + Delta-G solvation = -2553.220397 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.48740 -38.65429 -36.12972 -34.40014 -33.32813 -31.59343 -30.84153 -29.49379 -26.01166 -24.41216 -23.57332 -22.85972 -21.56255 -19.47919 -18.37467 -17.89640 -17.35704 -16.93544 -16.39156 -15.47471 -15.09429 -14.81385 -14.65194 -14.45454 -14.29819 -14.17680 -13.76203 -13.47479 -13.16855 -13.13512 -12.87571 -12.62391 -12.21667 -11.97806 -11.65365 -11.63763 -11.32344 -11.24899 -10.90842 -10.70830 -9.75487 -9.30469 -8.78354 -8.32662 -6.18843 0.72998 0.97218 1.24790 1.28944 1.39833 1.46721 2.14687 2.67158 3.41658 3.54457 3.80607 3.94067 4.07618 4.26473 4.35321 4.46391 4.52773 4.67461 4.69562 4.74670 4.85997 5.01823 5.04725 5.05869 5.12985 5.20063 5.30317 5.34263 5.47632 5.52857 5.62931 5.66653 5.83916 6.00089 6.14315 6.26394 6.44524 6.73804 6.93286 7.07677 7.33855 8.32510 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.021073 B = 0.009359 C = 0.007345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.381078 B = 2991.100519 C = 3811.331378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.045 3.955 3 Si 0.959 3.041 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.488 4.488 8 H 0.051 0.949 9 C 0.023 3.977 10 C -0.166 4.166 11 C -0.160 4.160 12 C 0.140 3.860 13 N -0.870 5.870 14 C -0.112 4.112 15 C -0.075 4.075 16 C -0.158 4.158 17 C -0.084 4.084 18 C -0.112 4.112 19 C -0.118 4.118 20 C -0.079 4.079 21 C -0.188 4.188 22 H 0.286 0.714 23 H 0.103 0.897 24 H 0.131 0.869 25 H 0.400 0.600 26 H 0.396 0.604 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.366 5.137 -8.095 18.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.182 1.182 7 C -0.520 4.520 8 H 0.069 0.931 9 C 0.019 3.981 10 C -0.186 4.186 11 C -0.183 4.183 12 C 0.037 3.963 13 N -0.413 5.413 14 C -0.117 4.117 15 C -0.075 4.075 16 C -0.176 4.176 17 C -0.121 4.121 18 C -0.150 4.150 19 C -0.155 4.155 20 C -0.116 4.116 21 C -0.208 4.208 22 H 0.096 0.904 23 H 0.121 0.879 24 H 0.148 0.852 25 H 0.229 0.771 26 H 0.225 0.775 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 16.044 5.214 -8.049 18.691 hybrid contribution -0.483 0.204 0.489 0.716 sum 15.561 5.418 -7.560 18.129 Atomic orbital electron populations 1.69784 1.08815 1.30507 1.40882 1.26588 0.95205 1.03484 0.91273 0.85572 0.79505 0.77691 0.78784 1.19335 1.20839 1.18168 1.19235 0.94783 0.95153 1.42830 0.93066 1.17671 0.93017 0.94157 0.93218 1.20841 0.93522 1.01946 1.02304 1.20229 0.95625 1.01030 1.01375 1.17464 0.85819 0.95819 0.97203 1.41738 1.06081 1.40599 1.52852 1.18509 0.92831 0.98991 1.01369 1.19695 0.97865 0.95441 0.94483 1.22486 0.99551 0.96302 0.99270 1.20476 1.01186 0.96088 0.94314 1.21587 0.96270 1.01675 0.95446 1.21650 0.98006 0.95858 1.00027 1.20435 1.00812 0.99244 0.91157 1.20938 0.95038 1.02805 1.01988 0.90352 0.87874 0.85168 0.77121 0.77531 0.89570 0.90978 0.89241 0.89700 0.91004 0.92939 0.89947 0.90056 0.93239 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.45 13.93 21.81 0.30 -51.15 16 2 C 0.05 2.62 5.40 85.21 0.46 3.08 16 3 Si 0.96 46.97 24.51 68.60 1.68 48.66 16 4 H -0.27 -12.66 6.70 99.48 0.67 -11.99 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.26 -12.88 6.87 99.48 0.68 -12.19 16 7 C -0.49 -29.19 9.55 23.37 0.22 -28.96 16 8 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 9 C 0.02 1.21 5.10 -21.31 -0.11 1.10 16 10 C -0.17 -7.89 9.72 22.50 0.22 -7.67 16 11 C -0.16 -6.39 9.80 22.10 0.22 -6.17 16 12 C 0.14 5.32 6.77 38.99 0.26 5.58 16 13 N -0.87 -24.15 8.95 -50.55 -0.45 -24.60 16 14 C -0.11 -4.72 5.04 -20.02 -0.10 -4.82 16 15 C -0.07 -2.54 4.19 -17.78 -0.07 -2.62 16 16 C -0.16 -4.71 8.86 25.27 0.22 -4.49 16 17 C -0.08 -1.79 6.11 29.66 0.18 -1.61 16 18 C -0.11 -2.06 6.00 30.72 0.18 -1.88 16 19 C -0.12 -2.69 6.01 30.77 0.18 -2.51 16 20 C -0.08 -2.35 5.80 29.71 0.17 -2.18 16 21 C -0.19 -9.41 6.89 22.96 0.16 -9.25 16 22 H 0.29 15.36 8.30 -92.71 -0.77 14.59 16 23 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 24 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 25 H 0.40 8.91 8.83 -92.71 -0.82 8.09 16 26 H 0.40 9.94 7.21 -92.71 -0.67 9.28 16 27 H 0.09 2.83 7.94 -2.91 -0.02 2.81 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 32 H 0.05 1.31 8.12 -2.39 -0.02 1.29 16 33 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.09 4.54 4.73 -2.91 -0.01 4.53 16 Total: -1.00 -65.74 289.57 3.27 -62.47 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: -0.46 Total: 27.03 kcal Atomic # 6 Polarization: -64.60 SS G_CDS: 2.20 Total: -62.40 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -0.15 Total: -75.75 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 1.68 Total: 48.66 kcal Total: -65.74 3.27 -62.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203023209.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.059 kcal (2) G-P(sol) polarization free energy of solvation -65.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds