Wall clock time and date at job start Mon Mar 30 2020 06:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.46884 * 2 1 4 4 C 1.38837 * 119.73556 * 90.00563 * 3 2 1 5 5 C 1.37748 * 120.66346 * 179.97438 * 4 3 2 6 6 C 1.39127 * 119.78041 * 0.02562 * 5 4 3 7 7 N 1.37685 * 133.50726 * 179.97438 * 6 5 4 8 8 H 0.97004 * 125.06136 * 0.02562 * 7 6 5 9 9 C 1.36828 * 109.87457 * 180.02562 * 7 6 5 10 10 C 1.50703 * 125.03459 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47064 * 265.02370 * 10 9 7 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.34238 * 109.93116 * 0.26597 * 9 7 6 20 20 C 1.50690 * 126.50262 * 179.71114 * 19 9 7 21 21 C 1.40660 * 119.33497 * 359.97438 * 6 5 4 22 22 C 1.36627 * 119.73443 * 269.97768 * 3 2 1 23 23 H 1.09002 * 109.46896 * 300.00042 * 1 2 3 24 24 H 1.08994 * 109.47152 * 59.99452 * 1 2 3 25 25 H 1.08998 * 109.46871 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46896 * 239.99958 * 2 1 3 27 27 H 1.09001 * 109.47210 * 119.99877 * 2 1 3 28 28 H 1.07998 * 119.66629 * 359.96962 * 4 3 2 29 29 H 1.08002 * 120.10828 * 179.97438 * 5 4 3 30 30 H 1.09002 * 109.47152 * 145.02462 * 10 9 7 31 31 H 1.09001 * 109.46980 * 25.02563 * 10 9 7 32 32 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 33 33 H 1.09001 * 109.47238 * 90.02929 * 20 19 9 34 34 H 1.09000 * 109.47068 * 210.02273 * 20 19 9 35 35 H 1.09000 * 109.47390 * 330.02255 * 20 19 9 36 36 H 1.07995 * 120.11678 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2620 2.0700 1.2056 5 6 2.7215 3.3684 1.2279 6 6 2.9582 4.0383 0.0317 7 7 3.4057 5.3042 -0.2733 8 1 3.6458 5.9822 0.3775 9 6 3.4612 5.4633 -1.6312 10 6 3.9051 6.7183 -2.3378 11 6 2.6994 7.5546 -2.6813 12 1 1.7107 7.2119 -2.4143 13 6 2.8588 8.7578 -3.3355 14 7 4.0629 9.1753 -3.6602 15 14 1.3644 9.7947 -3.7607 16 1 0.6424 10.1569 -2.5146 17 1 1.8019 11.0313 -4.4571 18 1 0.4609 9.0202 -4.6490 19 6 3.0566 4.3378 -2.2408 20 6 2.9654 4.1064 -3.7270 21 6 2.7240 3.3761 -1.1870 22 6 2.2586 2.0596 -1.1864 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.0784 1.5519 2.1352 29 1 2.8967 3.8650 2.1708 30 1 4.4352 6.4522 -3.2522 31 1 4.5681 7.2871 -1.6858 32 1 4.1749 10.0216 -4.1208 33 1 3.9112 3.7053 -4.0910 34 1 2.1653 3.3962 -3.9357 35 1 2.7535 5.0503 -4.2294 36 1 2.0778 1.5482 -2.1202 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213496007.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:49 Heat of formation + Delta-G solvation = 22.448354 kcal Electronic energy + Delta-G solvation = -16705.106001 eV Core-core repulsion = 14153.136956 eV Total energy + Delta-G solvation = -2551.969045 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.71640 -37.35595 -33.69338 -32.72647 -32.21145 -30.03138 -28.91254 -27.23303 -25.54441 -23.72518 -23.03135 -20.96351 -20.24566 -18.27996 -17.04205 -16.40978 -15.54083 -15.00539 -14.53409 -14.11435 -13.86961 -13.58791 -13.21448 -12.97464 -12.45538 -12.23669 -12.12466 -12.04774 -11.94653 -11.33703 -11.30210 -10.97806 -10.91776 -10.74813 -10.67277 -10.53524 -10.28891 -9.75159 -9.51022 -8.95072 -8.52126 -7.46734 -6.85827 -6.12579 -4.18482 1.64395 2.05294 3.27549 3.31763 3.33554 3.49490 3.81573 4.31045 4.38494 5.00095 5.03356 5.21395 5.29225 5.40150 5.48529 5.60638 5.73623 5.80632 5.87613 5.93928 6.03915 6.19552 6.25940 6.31696 6.42846 6.47780 6.51741 6.66057 6.79789 6.98778 7.04719 7.16479 7.31962 7.39680 7.67004 7.81685 7.95058 8.10866 8.31117 8.85911 9.46361 10.95766 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.034460 B = 0.005206 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.351555 B = 5376.603478 C = 5511.391109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 C -0.121 4.121 4 C -0.114 4.114 5 C -0.127 4.127 6 C 0.082 3.918 7 N -0.592 5.592 8 H 0.411 0.589 9 C 0.141 3.859 10 C 0.070 3.930 11 C -0.515 4.515 12 H 0.058 0.942 13 C 0.061 3.939 14 N -0.893 5.893 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.208 4.208 20 C -0.067 4.067 21 C -0.089 4.089 22 C -0.075 4.075 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.048 0.952 31 H 0.027 0.973 32 H 0.264 0.736 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.056 -13.497 6.690 15.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.122 4.122 4 C -0.133 4.133 5 C -0.148 4.148 6 C -0.026 4.026 7 N -0.194 5.194 8 H 0.247 0.753 9 C 0.033 3.967 10 C 0.033 3.967 11 C -0.553 4.553 12 H 0.077 0.923 13 C -0.141 4.141 14 N -0.531 5.531 15 Si 0.725 3.275 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.213 4.213 20 C -0.124 4.124 21 C -0.094 4.094 22 C -0.093 4.093 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.133 0.867 29 H 0.130 0.870 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.919 -13.237 6.649 15.098 hybrid contribution -0.662 1.065 0.218 1.272 sum -3.581 -12.172 6.867 14.427 Atomic orbital electron populations 1.21760 0.95416 1.00942 1.02228 1.20400 0.95659 0.93178 1.01983 1.19170 1.03902 0.96219 0.92939 1.20441 1.01929 0.93958 0.97000 1.19909 1.05129 0.95120 0.94603 1.18254 1.02848 0.86320 0.95137 1.41913 1.58516 1.11715 1.07289 0.75267 1.21286 0.96836 0.97573 0.81025 1.18095 0.97127 0.86449 0.95051 1.20956 0.92557 1.03642 1.38175 0.92327 1.24983 0.96055 0.97540 0.95499 1.69936 1.21212 1.21654 1.40316 0.86560 0.82751 0.79477 0.78710 1.20243 1.21163 1.19982 1.19884 1.13728 0.93138 0.94597 1.19968 0.99836 1.01995 0.90596 1.19187 1.03549 0.94121 0.92522 1.20005 0.99377 0.92866 0.97102 0.92763 0.92582 0.93035 0.91645 0.91752 0.86741 0.86986 0.93357 0.95485 0.92616 0.93298 0.93341 0.90710 0.86891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.90 37.16 0.37 -1.14 16 2 C -0.07 -0.83 6.05 -27.88 -0.17 -1.00 16 3 C -0.12 -1.75 5.10 -104.98 -0.54 -2.28 16 4 C -0.11 -1.63 9.66 -39.54 -0.38 -2.01 16 5 C -0.13 -1.99 10.08 -39.43 -0.40 -2.38 16 6 C 0.08 1.52 7.28 -83.99 -0.61 0.91 16 7 N -0.59 -11.48 6.07 -6.95 -0.04 -11.52 16 8 H 0.41 6.96 8.96 -40.82 -0.37 6.60 16 9 C 0.14 3.11 6.27 -81.77 -0.51 2.59 16 10 C 0.07 1.75 4.99 -29.03 -0.14 1.60 16 11 C -0.51 -13.95 9.09 -34.44 -0.31 -14.26 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -25.45 13.29 55.43 0.74 -24.72 16 15 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 C -0.21 -4.36 6.31 -102.71 -0.65 -5.01 16 20 C -0.07 -1.26 10.02 36.00 0.36 -0.89 16 21 C -0.09 -1.72 6.35 -105.14 -0.67 -2.39 16 22 C -0.07 -1.24 9.67 -39.64 -0.38 -1.63 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.68 8.07 -51.93 -0.42 0.27 16 27 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 28 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.05 1.26 7.94 -51.93 -0.41 0.84 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.53 7.83 -51.93 -0.41 1.12 16 36 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 306.40 15.07 4.62 4.62 Total: -1.00 -29.19 306.40 -9.21 -38.41 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.37 Total: 3.43 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: -4.13 Total: -26.31 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.69 Total: -36.23 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.19 -9.21 -38.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213496007.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.855 kcal (2) G-P(sol) polarization free energy of solvation -29.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds