Wall clock time and date at job start Mon Mar 30 2020 06:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.46884 * 2 1 4 4 C 1.38837 * 119.73556 * 90.00563 * 3 2 1 5 5 C 1.37748 * 120.66346 * 179.97438 * 4 3 2 6 6 C 1.39127 * 119.78041 * 0.02562 * 5 4 3 7 7 N 1.37685 * 133.50726 * 179.97438 * 6 5 4 8 8 H 0.97004 * 125.06136 * 0.02562 * 7 6 5 9 9 C 1.36828 * 109.87457 * 180.02562 * 7 6 5 10 10 C 1.50703 * 125.03459 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47064 * 265.02370 * 10 9 7 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.34238 * 109.93116 * 0.26597 * 9 7 6 20 20 C 1.50690 * 126.50262 * 179.71114 * 19 9 7 21 21 C 1.40660 * 119.33497 * 359.97438 * 6 5 4 22 22 C 1.36627 * 119.73443 * 269.97768 * 3 2 1 23 23 H 1.09002 * 109.46896 * 300.00042 * 1 2 3 24 24 H 1.08994 * 109.47152 * 59.99452 * 1 2 3 25 25 H 1.08998 * 109.46871 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46896 * 239.99958 * 2 1 3 27 27 H 1.09001 * 109.47210 * 119.99877 * 2 1 3 28 28 H 1.07998 * 119.66629 * 359.96962 * 4 3 2 29 29 H 1.08002 * 120.10828 * 179.97438 * 5 4 3 30 30 H 1.09002 * 109.47152 * 145.02462 * 10 9 7 31 31 H 1.09001 * 109.46980 * 25.02563 * 10 9 7 32 32 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 33 33 H 1.09001 * 109.47238 * 90.02929 * 20 19 9 34 34 H 1.09000 * 109.47068 * 210.02273 * 20 19 9 35 35 H 1.09000 * 109.47390 * 330.02255 * 20 19 9 36 36 H 1.07995 * 120.11678 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2620 2.0700 1.2056 5 6 2.7215 3.3684 1.2279 6 6 2.9582 4.0383 0.0317 7 7 3.4057 5.3042 -0.2733 8 1 3.6458 5.9822 0.3775 9 6 3.4612 5.4633 -1.6312 10 6 3.9051 6.7183 -2.3378 11 6 2.6994 7.5546 -2.6813 12 1 1.7107 7.2119 -2.4143 13 6 2.8588 8.7578 -3.3355 14 7 4.0629 9.1753 -3.6602 15 14 1.3644 9.7947 -3.7607 16 1 0.6424 10.1569 -2.5146 17 1 1.8019 11.0313 -4.4571 18 1 0.4609 9.0202 -4.6490 19 6 3.0566 4.3378 -2.2408 20 6 2.9654 4.1064 -3.7270 21 6 2.7240 3.3761 -1.1870 22 6 2.2586 2.0596 -1.1864 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.0784 1.5519 2.1352 29 1 2.8967 3.8650 2.1708 30 1 4.4352 6.4522 -3.2522 31 1 4.5681 7.2871 -1.6858 32 1 4.1749 10.0216 -4.1208 33 1 3.9112 3.7053 -4.0910 34 1 2.1653 3.3962 -3.9357 35 1 2.7535 5.0503 -4.2294 36 1 2.0778 1.5482 -2.1202 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213496007.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:49 Heat of formation + Delta-G solvation = 7.926114 kcal Electronic energy + Delta-G solvation = -16705.735733 eV Core-core repulsion = 14153.136956 eV Total energy + Delta-G solvation = -2552.598777 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.13571 -38.60771 -35.47607 -34.16298 -33.58845 -31.66933 -30.30843 -28.65974 -27.14228 -25.39937 -24.22930 -22.34815 -21.50122 -19.79575 -18.60708 -18.36321 -16.98790 -16.46844 -16.00233 -15.55391 -15.12463 -14.87674 -14.35271 -14.28693 -14.04725 -13.83444 -13.62901 -13.50749 -13.22898 -13.08899 -12.82953 -12.59400 -12.53291 -12.02305 -11.99337 -11.81779 -11.61561 -11.47422 -11.39603 -10.63872 -10.31277 -8.83681 -8.40503 -8.15940 -6.36695 0.33210 0.78652 1.39072 1.41036 1.49316 1.89891 2.35719 2.41992 3.03346 3.08206 3.84528 4.01360 4.09926 4.31980 4.36724 4.53785 4.55444 4.65880 4.67638 4.78627 4.91722 4.97094 5.01423 5.06924 5.17365 5.18756 5.24443 5.31028 5.35075 5.37056 5.48964 5.65205 5.69623 5.89582 6.00844 6.09663 6.18012 6.41973 6.71995 6.81888 7.32323 8.85176 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.034460 B = 0.005206 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.351555 B = 5376.603478 C = 5511.391109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 C -0.114 4.114 4 C -0.103 4.103 5 C -0.133 4.133 6 C 0.066 3.934 7 N -0.592 5.592 8 H 0.417 0.583 9 C 0.107 3.893 10 C 0.084 3.916 11 C -0.527 4.527 12 H 0.049 0.951 13 C 0.013 3.987 14 N -0.925 5.925 15 Si 0.962 3.038 16 H -0.271 1.271 17 H -0.278 1.278 18 H -0.269 1.269 19 C -0.216 4.216 20 C -0.063 4.063 21 C -0.119 4.119 22 C -0.086 4.086 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.152 0.848 29 H 0.137 0.863 30 H 0.025 0.975 31 H 0.008 0.992 32 H 0.267 0.733 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.604 -15.620 8.130 18.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.116 4.116 4 C -0.122 4.122 5 C -0.154 4.154 6 C -0.041 4.041 7 N -0.195 5.195 8 H 0.254 0.746 9 C -0.002 4.002 10 C 0.047 3.953 11 C -0.565 4.565 12 H 0.068 0.932 13 C -0.186 4.186 14 N -0.564 5.564 15 Si 0.787 3.213 16 H -0.196 1.196 17 H -0.203 1.203 18 H -0.194 1.194 19 C -0.222 4.222 20 C -0.120 4.120 21 C -0.124 4.124 22 C -0.105 4.105 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.169 0.831 29 H 0.155 0.845 30 H 0.044 0.956 31 H 0.026 0.974 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.468 -15.370 8.104 17.940 hybrid contribution -0.192 1.552 -0.144 1.570 sum -4.659 -13.818 7.959 16.613 Atomic orbital electron populations 1.21746 0.94668 1.02194 1.01601 1.20481 0.96144 0.90935 1.03493 1.19634 1.01959 0.97766 0.92214 1.20954 0.99476 0.93272 0.98489 1.20295 1.04811 0.95768 0.94494 1.18665 1.03295 0.85856 0.96277 1.41780 1.58854 1.12539 1.06367 0.74562 1.20822 0.99873 0.97026 0.82478 1.17722 0.95972 0.87586 0.94052 1.21174 0.92782 1.04299 1.38263 0.93239 1.25801 0.98885 0.98674 0.95235 1.70043 1.23191 1.22196 1.40994 0.85541 0.79240 0.77906 0.78628 1.19615 1.20344 1.19411 1.20253 1.12734 0.93477 0.95770 1.19953 1.01228 1.01240 0.89610 1.19383 1.05451 0.95385 0.92136 1.20248 0.99520 0.91951 0.98756 0.92805 0.93835 0.90916 0.90868 0.89622 0.83058 0.84537 0.95642 0.97351 0.92377 0.92097 0.91250 0.93202 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.90 71.98 0.71 -1.73 16 2 C -0.07 -1.33 6.05 29.85 0.18 -1.15 16 3 C -0.11 -2.93 5.10 -20.10 -0.10 -3.04 16 4 C -0.10 -2.54 9.66 22.30 0.22 -2.32 16 5 C -0.13 -3.84 10.08 22.37 0.23 -3.62 16 6 C 0.07 2.42 7.28 39.03 0.28 2.71 16 7 N -0.59 -23.58 6.07 -175.92 -1.07 -24.65 16 8 H 0.42 14.65 8.96 -92.71 -0.83 13.82 16 9 C 0.11 4.91 6.27 40.87 0.26 5.16 16 10 C 0.08 4.45 4.99 29.10 0.15 4.59 16 11 C -0.53 -29.66 9.09 25.60 0.23 -29.43 16 12 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 13 C 0.01 0.73 5.46 84.66 0.46 1.20 16 14 N -0.92 -54.22 13.29 21.45 0.28 -53.93 16 15 Si 0.96 43.80 29.54 68.60 2.03 45.82 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 C -0.22 -9.32 6.31 -18.63 -0.12 -9.44 16 20 C -0.06 -2.44 10.02 71.23 0.71 -1.72 16 21 C -0.12 -4.57 6.35 -20.20 -0.13 -4.70 16 22 C -0.09 -2.71 9.67 22.23 0.22 -2.50 16 23 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 1.25 8.07 -2.39 -0.02 1.23 16 27 H 0.09 1.24 8.08 -2.39 -0.02 1.22 16 28 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 29 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.03 1.42 7.94 -2.39 -0.02 1.40 16 31 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.14 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.05 2.14 7.83 -2.39 -0.02 2.12 16 36 H 0.12 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -64.26 306.40 4.77 -59.49 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.23 Total: 19.26 kcal Atomic # 6 Polarization: -49.28 SS G_CDS: 3.29 Total: -45.99 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -0.78 Total: -78.58 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -64.26 4.77 -59.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213496007.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.412 kcal (2) G-P(sol) polarization free energy of solvation -64.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds