Wall clock time and date at job start Mon Mar 30 2020 06:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34237 * 126.49281 * 2 1 4 4 C 1.50699 * 125.03456 * 359.97313 * 3 2 1 5 5 C 1.50706 * 109.46817 * 84.72294 * 4 3 2 6 6 H 1.07995 * 120.00167 * 359.72198 * 5 4 3 7 7 C 1.37879 * 119.99394 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99350 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47353 * 89.99430 * 9 7 5 11 11 H 1.48494 * 109.47031 * 209.99977 * 9 7 5 12 12 H 1.48504 * 109.46680 * 329.99678 * 9 7 5 13 13 N 1.36831 * 109.93324 * 179.70909 * 3 2 1 14 14 H 0.97003 * 125.06226 * 180.28418 * 13 3 2 15 15 C 1.37694 * 109.87667 * 0.26381 * 13 3 2 16 16 C 1.40700 * 107.15371 * 0.02562 * 15 13 3 17 17 C 1.39588 * 119.93420 * 180.02562 * 16 15 13 18 18 C 1.36660 * 119.75895 * 359.97438 * 17 16 15 19 19 C 1.38783 * 120.53211 * 359.97438 * 18 17 16 20 20 C 1.50699 * 119.66770 * 180.02562 * 19 18 17 21 21 C 1.37790 * 120.66568 * 0.03028 * 19 18 17 22 22 C 1.50699 * 120.11121 * 179.97438 * 21 19 18 23 23 H 1.08999 * 109.46734 * 90.02960 * 1 2 3 24 24 H 1.09007 * 109.46898 * 210.02356 * 1 2 3 25 25 H 1.08996 * 109.47750 * 330.02241 * 1 2 3 26 26 H 1.09000 * 109.47247 * 324.72357 * 4 3 2 27 27 H 1.09001 * 109.47358 * 204.71783 * 4 3 2 28 28 H 0.97005 * 119.99656 * 180.02562 * 8 7 5 29 29 H 1.07995 * 120.11893 * 179.97438 * 17 16 15 30 30 H 1.08008 * 119.73288 * 180.02562 * 18 17 16 31 31 H 1.09006 * 109.47171 * 270.02032 * 20 19 18 32 32 H 1.09005 * 109.47186 * 30.02349 * 20 19 18 33 33 H 1.09003 * 109.47124 * 150.02265 * 20 19 18 34 34 H 1.09006 * 109.46683 * 270.01672 * 22 21 19 35 35 H 1.09000 * 109.47387 * 30.01268 * 22 21 19 36 36 H 1.08994 * 109.47403 * 150.02029 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3054 1.0792 0.0000 4 6 1.8279 2.5085 -0.0006 5 6 1.5443 2.9439 1.4141 6 1 1.6904 2.2531 2.2313 7 6 1.0932 4.2225 1.6644 8 7 0.8452 4.6023 2.8989 9 14 0.8329 5.4149 0.2502 10 1 -0.5584 5.2895 -0.2534 11 1 1.0647 6.8030 0.7242 12 1 1.7858 5.1000 -0.8444 13 7 3.6169 0.6892 0.0065 14 1 4.3774 1.2914 0.0118 15 6 3.6966 -0.6854 0.0050 16 6 2.3785 -1.1775 -0.0034 17 6 2.1490 -2.5544 -0.0061 18 6 3.2077 -3.4185 -0.0012 19 6 4.5098 -2.9383 0.0061 20 6 5.6627 -3.9087 0.0109 21 6 4.7590 -1.5831 0.0090 22 6 6.1778 -1.0753 0.0174 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3634 0.8901 0.5134 26 1 0.9173 2.5872 -0.5944 27 1 2.5983 3.1488 -0.4302 28 1 0.5275 5.5018 3.0750 29 1 1.1385 -2.9354 -0.0121 30 1 3.0297 -4.4838 -0.0037 31 1 5.9352 -4.1441 1.0397 32 1 5.3704 -4.8228 -0.5059 33 1 6.5166 -3.4610 -0.4978 34 1 6.5143 -0.9544 1.0472 35 1 6.8226 -1.7901 -0.4939 36 1 6.2228 -0.1142 -0.4947 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213496226.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:39 Heat of formation + Delta-G solvation = 29.569273 kcal Electronic energy + Delta-G solvation = -16940.794998 eV Core-core repulsion = 14389.134738 eV Total energy + Delta-G solvation = -2551.660259 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.85942 -37.39830 -33.42493 -33.25169 -31.52917 -30.60629 -29.21780 -26.81973 -26.02143 -24.99688 -22.61487 -21.27674 -19.59470 -18.24429 -16.91811 -16.89116 -15.57408 -14.97992 -14.55681 -14.23181 -13.73958 -13.35919 -13.13181 -12.88648 -12.71163 -12.43923 -12.20904 -12.05003 -11.99553 -11.77394 -11.63225 -11.39035 -11.02125 -10.79024 -10.69429 -10.43243 -10.10538 -10.05126 -9.45971 -8.71553 -8.67321 -7.53206 -6.83054 -6.15540 -4.16359 1.56615 2.05338 3.22086 3.30386 3.31020 3.37856 3.73693 4.26946 4.32731 5.00858 5.13438 5.16250 5.24445 5.33610 5.41912 5.58229 5.69303 5.76206 5.79758 5.91485 5.96106 5.99397 6.12609 6.22839 6.40108 6.43974 6.48665 6.65692 6.74378 6.77895 6.84854 6.99222 7.08306 7.30907 7.52588 7.59402 7.82557 8.15672 8.41799 8.90317 9.42930 10.97027 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.035226 B = 0.005893 C = 0.005430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.682298 B = 4749.881507 C = 5155.195802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.199 4.199 3 C 0.142 3.858 4 C 0.037 3.963 5 C -0.516 4.516 6 H 0.076 0.924 7 C 0.073 3.927 8 N -0.895 5.895 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.266 1.266 13 N -0.589 5.589 14 H 0.410 0.590 15 C 0.094 3.906 16 C -0.094 4.094 17 C -0.078 4.078 18 C -0.150 4.150 19 C -0.089 4.089 20 C -0.108 4.108 21 C -0.097 4.097 22 C -0.111 4.111 23 H 0.048 0.952 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.042 0.958 27 H 0.026 0.974 28 H 0.266 0.734 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.868 -12.392 -7.487 16.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.204 4.204 3 C 0.033 3.967 4 C 0.000 4.000 5 C -0.554 4.554 6 H 0.094 0.906 7 C -0.130 4.130 8 N -0.533 5.533 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 N -0.191 5.191 14 H 0.247 0.753 15 C -0.014 4.014 16 C -0.099 4.099 17 C -0.097 4.097 18 C -0.169 4.169 19 C -0.090 4.090 20 C -0.164 4.164 21 C -0.100 4.100 22 C -0.168 4.168 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.094 0.906 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.879 -12.123 -7.370 15.767 hybrid contribution 0.178 1.036 -0.495 1.162 sum 7.056 -11.087 -7.865 15.315 Atomic orbital electron populations 1.20006 0.89966 1.02328 1.00376 1.19879 0.95093 0.89642 1.15812 1.20700 0.81429 0.97227 0.97300 1.18518 0.96599 0.85596 0.99330 1.20863 1.45392 0.98531 0.90648 0.90588 1.24965 0.94638 0.97863 0.95508 1.69895 1.45187 1.19231 1.18994 0.86842 0.79314 0.80636 0.82943 1.19855 1.21142 1.19084 1.41791 1.07730 1.04473 1.65129 0.75318 1.17984 0.94925 0.83448 1.05012 1.19153 0.92107 0.93159 1.05483 1.20138 0.98515 0.91133 0.99901 1.20315 0.91824 0.98732 1.06025 1.19202 0.94686 0.92269 1.02823 1.20753 0.96282 0.97641 1.01749 1.18556 0.92988 0.91651 1.06832 1.20724 0.93335 1.00797 1.01907 0.93283 0.93031 0.90613 0.94007 0.95601 0.92452 0.86706 0.86858 0.91744 0.92080 0.91727 0.91600 0.91239 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 10.02 36.01 0.36 -0.92 16 2 C -0.20 -4.10 6.31 -102.71 -0.65 -4.75 16 3 C 0.14 3.04 6.27 -81.77 -0.51 2.53 16 4 C 0.04 0.87 4.06 -29.03 -0.12 0.75 16 5 C -0.52 -14.21 9.65 -34.44 -0.33 -14.54 16 6 H 0.08 2.34 7.98 -52.49 -0.42 1.92 16 7 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 8 N -0.90 -26.79 13.96 55.43 0.77 -26.01 16 9 Si 0.88 20.61 27.47 -169.99 -4.67 15.94 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 13 N -0.59 -11.23 6.07 -6.95 -0.04 -11.27 16 14 H 0.41 6.83 8.87 -40.82 -0.36 6.47 16 15 C 0.09 1.74 6.95 -83.99 -0.58 1.16 16 16 C -0.09 -1.81 6.35 -105.14 -0.67 -2.48 16 17 C -0.08 -1.30 10.05 -39.65 -0.40 -1.69 16 18 C -0.15 -2.19 9.61 -39.95 -0.38 -2.57 16 19 C -0.09 -1.27 5.88 -104.58 -0.61 -1.89 16 20 C -0.11 -1.14 9.58 36.01 0.35 -0.79 16 21 C -0.10 -1.53 5.89 -104.47 -0.62 -2.15 16 22 C -0.11 -1.38 9.60 36.01 0.35 -1.03 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 25 H 0.07 1.52 7.82 -51.93 -0.41 1.12 16 26 H 0.04 0.95 7.37 -51.93 -0.38 0.56 16 27 H 0.03 0.58 7.20 -51.93 -0.37 0.21 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.11 1.35 8.06 -52.48 -0.42 0.92 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.06 0.61 5.91 -51.93 -0.31 0.30 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.71 5.92 -51.93 -0.31 0.41 16 36 H 0.05 0.66 7.99 -51.93 -0.42 0.24 16 LS Contribution 298.09 15.07 4.49 4.49 Total: -1.00 -30.63 298.09 -8.46 -39.09 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -5.10 Total: 4.21 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: -3.92 Total: -26.45 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.73 Total: -37.29 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.63 -8.46 -39.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213496226.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.661 kcal (2) G-P(sol) polarization free energy of solvation -30.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds