Wall clock time and date at job start Mon Mar 30 2020 06:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34237 * 126.49281 * 2 1 4 4 C 1.50699 * 125.03456 * 359.97313 * 3 2 1 5 5 C 1.50706 * 109.46817 * 84.72294 * 4 3 2 6 6 H 1.07995 * 120.00167 * 359.72198 * 5 4 3 7 7 C 1.37879 * 119.99394 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99350 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47353 * 89.99430 * 9 7 5 11 11 H 1.48494 * 109.47031 * 209.99977 * 9 7 5 12 12 H 1.48504 * 109.46680 * 329.99678 * 9 7 5 13 13 N 1.36831 * 109.93324 * 179.70909 * 3 2 1 14 14 H 0.97003 * 125.06226 * 180.28418 * 13 3 2 15 15 C 1.37694 * 109.87667 * 0.26381 * 13 3 2 16 16 C 1.40700 * 107.15371 * 0.02562 * 15 13 3 17 17 C 1.39588 * 119.93420 * 180.02562 * 16 15 13 18 18 C 1.36660 * 119.75895 * 359.97438 * 17 16 15 19 19 C 1.38783 * 120.53211 * 359.97438 * 18 17 16 20 20 C 1.50699 * 119.66770 * 180.02562 * 19 18 17 21 21 C 1.37790 * 120.66568 * 0.03028 * 19 18 17 22 22 C 1.50699 * 120.11121 * 179.97438 * 21 19 18 23 23 H 1.08999 * 109.46734 * 90.02960 * 1 2 3 24 24 H 1.09007 * 109.46898 * 210.02356 * 1 2 3 25 25 H 1.08996 * 109.47750 * 330.02241 * 1 2 3 26 26 H 1.09000 * 109.47247 * 324.72357 * 4 3 2 27 27 H 1.09001 * 109.47358 * 204.71783 * 4 3 2 28 28 H 0.97005 * 119.99656 * 180.02562 * 8 7 5 29 29 H 1.07995 * 120.11893 * 179.97438 * 17 16 15 30 30 H 1.08008 * 119.73288 * 180.02562 * 18 17 16 31 31 H 1.09006 * 109.47171 * 270.02032 * 20 19 18 32 32 H 1.09005 * 109.47186 * 30.02349 * 20 19 18 33 33 H 1.09003 * 109.47124 * 150.02265 * 20 19 18 34 34 H 1.09006 * 109.46683 * 270.01672 * 22 21 19 35 35 H 1.09000 * 109.47387 * 30.01268 * 22 21 19 36 36 H 1.08994 * 109.47403 * 150.02029 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3054 1.0792 0.0000 4 6 1.8279 2.5085 -0.0006 5 6 1.5443 2.9439 1.4141 6 1 1.6904 2.2531 2.2313 7 6 1.0932 4.2225 1.6644 8 7 0.8452 4.6023 2.8989 9 14 0.8329 5.4149 0.2502 10 1 -0.5584 5.2895 -0.2534 11 1 1.0647 6.8030 0.7242 12 1 1.7858 5.1000 -0.8444 13 7 3.6169 0.6892 0.0065 14 1 4.3774 1.2914 0.0118 15 6 3.6966 -0.6854 0.0050 16 6 2.3785 -1.1775 -0.0034 17 6 2.1490 -2.5544 -0.0061 18 6 3.2077 -3.4185 -0.0012 19 6 4.5098 -2.9383 0.0061 20 6 5.6627 -3.9087 0.0109 21 6 4.7590 -1.5831 0.0090 22 6 6.1778 -1.0753 0.0174 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3634 0.8901 0.5134 26 1 0.9173 2.5872 -0.5944 27 1 2.5983 3.1488 -0.4302 28 1 0.5275 5.5018 3.0750 29 1 1.1385 -2.9354 -0.0121 30 1 3.0297 -4.4838 -0.0037 31 1 5.9352 -4.1441 1.0397 32 1 5.3704 -4.8228 -0.5059 33 1 6.5166 -3.4610 -0.4978 34 1 6.5143 -0.9544 1.0472 35 1 6.8226 -1.7901 -0.4939 36 1 6.2228 -0.1142 -0.4947 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213496226.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:39 Heat of formation + Delta-G solvation = 12.443291 kcal Electronic energy + Delta-G solvation = -16941.537636 eV Core-core repulsion = 14389.134738 eV Total energy + Delta-G solvation = -2552.402897 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.23041 -38.65378 -35.30031 -34.62526 -33.13320 -31.93859 -30.73207 -28.11912 -27.27967 -26.46996 -24.33291 -22.58537 -20.93114 -19.72510 -19.02829 -18.27846 -16.94726 -16.38009 -16.07646 -15.67880 -15.11694 -14.71677 -14.55387 -14.35158 -13.99058 -13.65268 -13.63172 -13.46215 -13.39766 -13.15887 -12.98414 -12.59681 -12.49466 -12.33402 -12.17647 -11.86585 -11.80869 -11.59037 -11.42504 -10.81943 -10.02552 -8.87308 -8.33263 -8.23905 -6.38903 0.28662 0.79334 1.37199 1.37788 1.48949 1.85163 2.32979 2.33898 3.00044 3.02250 3.85773 3.98152 4.07647 4.23547 4.32732 4.43413 4.54244 4.58630 4.70562 4.77209 4.85267 4.91153 4.94074 4.99045 5.02971 5.05069 5.08302 5.18273 5.28161 5.36502 5.44028 5.48839 5.75229 5.81623 6.01333 6.13643 6.20210 6.40459 6.64158 6.81044 7.24550 8.84472 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.035226 B = 0.005893 C = 0.005430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.682298 B = 4749.881507 C = 5155.195802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.210 4.210 3 C 0.105 3.895 4 C 0.048 3.952 5 C -0.519 4.519 6 H 0.023 0.977 7 C 0.013 3.987 8 N -0.947 5.947 9 Si 0.950 3.050 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.245 1.245 13 N -0.589 5.589 14 H 0.416 0.584 15 C 0.077 3.923 16 C -0.129 4.129 17 C -0.090 4.090 18 C -0.146 4.146 19 C -0.084 4.084 20 C -0.106 4.106 21 C -0.112 4.112 22 C -0.109 4.109 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.035 0.965 28 H 0.269 0.731 29 H 0.130 0.870 30 H 0.147 0.853 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.145 -14.138 -9.448 18.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.217 4.217 3 C -0.003 4.003 4 C 0.010 3.990 5 C -0.557 4.557 6 H 0.042 0.958 7 C -0.184 4.184 8 N -0.587 5.587 9 Si 0.773 3.227 10 H -0.187 1.187 11 H -0.209 1.209 12 H -0.168 1.168 13 N -0.192 5.192 14 H 0.254 0.746 15 C -0.030 4.030 16 C -0.134 4.134 17 C -0.109 4.109 18 C -0.165 4.165 19 C -0.085 4.085 20 C -0.163 4.163 21 C -0.115 4.115 22 C -0.165 4.165 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.148 0.852 30 H 0.164 0.836 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.174 -13.891 -9.342 18.629 hybrid contribution -0.162 1.355 0.199 1.379 sum 8.012 -12.535 -9.144 17.462 Atomic orbital electron populations 1.19999 0.89146 1.01704 1.01493 1.20290 0.96057 0.90452 1.14854 1.20482 0.82876 0.96536 1.00436 1.18287 0.97133 0.87183 0.96387 1.20987 1.45140 0.97855 0.91711 0.95812 1.25932 0.94104 0.99921 0.98489 1.70057 1.46788 1.20045 1.21766 0.85664 0.80113 0.77477 0.79476 1.18693 1.20862 1.16798 1.41695 1.07096 1.05115 1.65327 0.74610 1.18427 0.95856 0.83276 1.05447 1.19414 0.92244 0.94092 1.07624 1.20428 1.00149 0.90258 1.00030 1.20770 0.91458 1.00185 1.04123 1.19785 0.96093 0.92479 1.00160 1.20845 0.95076 0.97371 1.02971 1.19021 0.93884 0.91993 1.06612 1.20777 0.91750 1.01474 1.02541 0.91202 0.91575 0.93202 0.93315 0.94658 0.92227 0.85243 0.83551 0.90564 0.90163 0.90321 0.91196 0.88619 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.48 10.02 71.24 0.71 -1.77 16 2 C -0.21 -8.90 6.31 -18.62 -0.12 -9.01 16 3 C 0.11 4.65 6.27 40.86 0.26 4.90 16 4 C 0.05 2.27 4.06 29.10 0.12 2.39 16 5 C -0.52 -29.86 9.65 25.60 0.25 -29.61 16 6 H 0.02 1.56 7.98 -2.91 -0.02 1.54 16 7 C 0.01 0.75 5.47 84.66 0.46 1.22 16 8 N -0.95 -58.83 13.96 21.45 0.30 -58.53 16 9 Si 0.95 42.72 27.47 68.60 1.88 44.60 16 10 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 13 N -0.59 -22.95 6.07 -175.92 -1.07 -24.02 16 14 H 0.42 14.22 8.87 -92.71 -0.82 13.40 16 15 C 0.08 2.85 6.95 39.03 0.27 3.12 16 16 C -0.13 -4.99 6.35 -20.20 -0.13 -5.11 16 17 C -0.09 -2.86 10.05 22.23 0.22 -2.63 16 18 C -0.15 -3.85 9.61 22.03 0.21 -3.63 16 19 C -0.08 -2.15 5.88 -19.84 -0.12 -2.27 16 20 C -0.11 -1.77 9.58 71.24 0.68 -1.08 16 21 C -0.11 -3.33 5.89 -19.77 -0.12 -3.45 16 22 C -0.11 -2.45 9.60 71.24 0.68 -1.77 16 23 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.07 2.21 8.14 -2.38 -0.02 2.20 16 25 H 0.05 2.09 7.82 -2.39 -0.02 2.07 16 26 H 0.05 2.21 7.37 -2.39 -0.02 2.19 16 27 H 0.04 1.58 7.20 -2.39 -0.02 1.56 16 28 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 29 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 30 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 31 H 0.08 1.15 8.14 -2.38 -0.02 1.14 16 32 H 0.08 1.07 8.08 -2.38 -0.02 1.05 16 33 H 0.08 1.11 5.91 -2.39 -0.01 1.10 16 34 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.10 1.61 5.92 -2.39 -0.01 1.60 16 36 H 0.05 1.22 7.99 -2.39 -0.02 1.21 16 Total: -1.00 -69.32 298.09 4.71 -64.61 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.20 Total: 22.05 kcal Atomic # 6 Polarization: -52.10 SS G_CDS: 3.39 Total: -48.71 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -0.77 Total: -82.55 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.88 Total: 44.60 kcal Total: -69.32 4.71 -64.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213496226.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.051 kcal (2) G-P(sol) polarization free energy of solvation -69.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds