Wall clock time and date at job start Mon Mar 30 2020 05:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34247 * 126.50018 * 2 1 4 4 C 1.50702 * 125.02784 * 359.40956 * 3 2 1 5 5 C 1.50694 * 109.47032 * 85.55250 * 4 3 2 6 6 H 1.08006 * 120.00227 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00154 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99539 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00414 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46729 * 90.00060 * 9 7 5 11 11 H 1.48498 * 109.47209 * 210.00152 * 9 7 5 12 12 H 1.48495 * 109.46772 * 330.00193 * 9 7 5 13 13 N 1.36832 * 109.93651 * 179.91455 * 3 2 1 14 14 H 0.97003 * 125.05940 * 179.52202 * 13 3 2 15 15 C 1.37692 * 109.87872 * 359.49290 * 13 3 2 16 16 C 1.40707 * 107.15033 * 0.21047 * 15 13 3 17 17 C 1.39591 * 119.93148 * 180.32378 * 16 15 13 18 18 C 1.36668 * 119.76049 * 359.74606 * 17 16 15 19 19 C 1.50698 * 119.73586 * 179.97438 * 18 17 16 20 20 C 1.38787 * 120.52921 * 0.02562 * 18 17 16 21 21 C 1.37793 * 120.66535 * 359.97428 * 20 18 17 22 22 C 1.50703 * 120.10942 * 179.97438 * 21 20 18 23 23 H 1.09004 * 109.46995 * 270.78480 * 1 2 3 24 24 H 1.08994 * 109.47246 * 30.78933 * 1 2 3 25 25 H 1.08995 * 109.47309 * 150.78997 * 1 2 3 26 26 H 1.09000 * 109.46581 * 205.55471 * 4 3 2 27 27 H 1.08996 * 109.46813 * 325.55089 * 4 3 2 28 28 H 0.97010 * 119.99645 * 179.97438 * 8 7 5 29 29 H 1.08001 * 120.12250 * 179.76628 * 17 16 15 30 30 H 1.08999 * 109.47829 * 270.02735 * 19 18 17 31 31 H 1.09008 * 109.46934 * 30.03022 * 19 18 17 32 32 H 1.09001 * 109.46920 * 150.02111 * 19 18 17 33 33 H 1.08002 * 119.66918 * 179.97438 * 20 18 17 34 34 H 1.09002 * 109.47152 * 90.00084 * 22 21 20 35 35 H 1.09001 * 109.46980 * 330.00184 * 22 21 20 36 36 H 1.09004 * 109.47113 * 210.00165 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0791 0.0000 4 6 1.8281 2.5085 -0.0127 5 6 1.5527 2.9587 1.3988 6 1 1.7083 2.2780 2.2228 7 6 1.1032 4.2398 1.6385 8 7 0.9142 5.0688 0.6352 9 14 0.7611 4.7977 3.3882 10 1 1.9937 5.3878 3.9694 11 1 -0.3194 5.8163 3.3807 12 1 0.3373 3.6325 4.2053 13 7 3.6170 0.6891 0.0019 14 1 4.3775 1.2913 -0.0043 15 6 3.6967 -0.6855 0.0147 16 6 2.3784 -1.1775 0.0161 17 6 2.1488 -2.5542 0.0350 18 6 3.2075 -3.4184 0.0468 19 6 2.9590 -4.9046 0.0678 20 6 4.5096 -2.9383 0.0407 21 6 4.7589 -1.5832 0.0221 22 6 6.1778 -1.0755 0.0162 23 1 -0.3633 0.0141 1.0276 24 1 -0.3633 0.8828 -0.5260 25 1 -0.3634 -0.8969 -0.5015 26 1 2.5960 3.1441 -0.4536 27 1 0.9141 2.5809 -0.6021 28 1 0.5975 5.9702 0.8038 29 1 1.1382 -2.9352 0.0400 30 1 2.8989 -5.2485 1.1004 31 1 2.0213 -5.1235 -0.4432 32 1 3.7769 -5.4169 -0.4388 33 1 5.3359 -3.6337 0.0506 34 1 6.5208 -0.9674 -1.0128 35 1 6.8193 -1.7839 0.5404 36 1 6.2197 -0.1081 0.5168 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213496306.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:39 Heat of formation + Delta-G solvation = 21.852917 kcal Electronic energy + Delta-G solvation = -16861.699806 eV Core-core repulsion = 14309.704941 eV Total energy + Delta-G solvation = -2551.994865 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.78047 -37.21461 -33.71173 -33.07542 -31.42792 -30.61337 -28.33788 -26.87090 -25.57339 -25.43107 -23.19231 -20.50977 -20.10220 -18.15996 -17.07567 -16.41337 -15.33579 -14.73510 -14.47134 -14.31188 -13.56359 -13.23954 -13.15943 -13.02538 -12.49999 -12.39882 -12.17834 -12.01853 -11.92696 -11.76090 -11.40021 -11.28390 -10.96913 -10.74726 -10.63095 -10.52619 -10.31117 -9.75998 -9.48266 -8.77209 -8.51909 -7.42086 -6.82266 -6.12282 -4.17811 1.61594 2.06669 3.25736 3.32173 3.35754 3.49500 3.81358 4.28420 4.38935 5.02801 5.14563 5.21867 5.25881 5.49427 5.51282 5.69448 5.73511 5.76798 5.78562 5.91273 5.98725 6.05181 6.20781 6.33821 6.46654 6.51035 6.56095 6.67893 6.77892 6.97751 7.06294 7.15372 7.31549 7.41083 7.67536 7.82272 7.95844 8.11273 8.31566 8.86571 9.46987 10.96163 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.030617 B = 0.005815 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.297424 B = 4813.829526 C = 5182.678454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.209 4.209 3 C 0.141 3.859 4 C 0.070 3.930 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.061 3.939 8 N -0.893 5.893 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.590 5.590 14 H 0.410 0.590 15 C 0.085 3.915 16 C -0.085 4.085 17 C -0.083 4.083 18 C -0.122 4.122 19 C -0.102 4.102 20 C -0.118 4.118 21 C -0.094 4.094 22 C -0.108 4.108 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.045 0.955 26 H 0.027 0.973 27 H 0.049 0.951 28 H 0.263 0.737 29 H 0.113 0.887 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.115 0.885 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.568 -13.471 -2.025 14.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.214 4.214 3 C 0.033 3.967 4 C 0.033 3.967 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.192 5.192 14 H 0.246 0.754 15 C -0.023 4.023 16 C -0.090 4.090 17 C -0.101 4.101 18 C -0.124 4.124 19 C -0.159 4.159 20 C -0.137 4.137 21 C -0.097 4.097 22 C -0.165 4.165 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.131 0.869 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.133 0.867 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.577 -13.185 -2.071 14.465 hybrid contribution 0.261 0.739 0.997 1.268 sum 5.838 -12.445 -1.074 13.788 Atomic orbital electron populations 1.19906 0.89994 1.00773 1.01132 1.19884 0.95072 0.89633 1.16827 1.21264 0.81195 0.98247 0.95998 1.18096 0.97149 0.82959 0.98512 1.20986 1.45114 0.97459 0.91587 0.92310 1.24982 0.95257 0.96523 0.97349 1.69950 1.45914 1.06635 1.30671 0.86504 0.78024 0.78549 0.84486 1.20648 1.21035 1.19691 1.41874 1.07900 1.04374 1.65092 0.75353 1.18038 0.94939 0.83619 1.05674 1.19161 0.92167 0.93059 1.04659 1.20001 0.98073 0.90928 1.01111 1.19183 0.92971 0.95219 1.04985 1.20644 1.01614 0.92159 1.01487 1.20342 0.95921 0.93258 1.04219 1.18758 0.92973 0.92224 1.05765 1.20654 0.93088 1.01031 1.01709 0.92574 0.91773 0.93579 0.95527 0.93327 0.92691 0.86852 0.92076 0.92182 0.92322 0.86716 0.91751 0.91681 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.15 10.16 36.00 0.37 -0.78 16 2 C -0.21 -4.40 6.31 -102.71 -0.65 -5.05 16 3 C 0.14 3.12 6.27 -81.77 -0.51 2.61 16 4 C 0.07 1.75 5.21 -29.04 -0.15 1.60 16 5 C -0.51 -13.96 9.09 -34.44 -0.31 -14.27 16 6 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -25.52 13.29 55.43 0.74 -24.79 16 9 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.59 -11.49 6.07 -6.95 -0.04 -11.53 16 14 H 0.41 7.04 8.86 -40.82 -0.36 6.68 16 15 C 0.08 1.59 6.95 -83.99 -0.58 1.01 16 16 C -0.09 -1.67 6.35 -105.13 -0.67 -2.34 16 17 C -0.08 -1.39 9.67 -39.64 -0.38 -1.78 16 18 C -0.12 -1.81 5.85 -104.99 -0.61 -2.42 16 19 C -0.10 -1.14 9.99 36.00 0.36 -0.78 16 20 C -0.12 -1.73 9.31 -39.54 -0.37 -2.10 16 21 C -0.09 -1.50 5.89 -104.47 -0.62 -2.12 16 22 C -0.11 -1.35 10.02 36.01 0.36 -0.99 16 23 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.06 1.24 7.17 -51.93 -0.37 0.87 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 1.27 7.20 -51.93 -0.37 0.89 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.61 8.08 -51.92 -0.42 0.19 16 32 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 36 H 0.06 0.72 7.98 -51.93 -0.41 0.31 16 LS Contribution 305.09 15.07 4.60 4.60 Total: -1.00 -29.56 305.09 -8.88 -38.44 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.28 Total: 2.97 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: -3.87 Total: -25.84 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.69 Total: -36.32 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.56 -8.88 -38.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213496306.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.297 kcal (2) G-P(sol) polarization free energy of solvation -29.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds