Wall clock time and date at job start Mon Mar 30 2020 05:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34247 * 126.50018 * 2 1 4 4 C 1.50702 * 125.02784 * 359.40956 * 3 2 1 5 5 C 1.50694 * 109.47032 * 85.55250 * 4 3 2 6 6 H 1.08006 * 120.00227 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00154 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99539 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00414 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46729 * 90.00060 * 9 7 5 11 11 H 1.48498 * 109.47209 * 210.00152 * 9 7 5 12 12 H 1.48495 * 109.46772 * 330.00193 * 9 7 5 13 13 N 1.36832 * 109.93651 * 179.91455 * 3 2 1 14 14 H 0.97003 * 125.05940 * 179.52202 * 13 3 2 15 15 C 1.37692 * 109.87872 * 359.49290 * 13 3 2 16 16 C 1.40707 * 107.15033 * 0.21047 * 15 13 3 17 17 C 1.39591 * 119.93148 * 180.32378 * 16 15 13 18 18 C 1.36668 * 119.76049 * 359.74606 * 17 16 15 19 19 C 1.50698 * 119.73586 * 179.97438 * 18 17 16 20 20 C 1.38787 * 120.52921 * 0.02562 * 18 17 16 21 21 C 1.37793 * 120.66535 * 359.97428 * 20 18 17 22 22 C 1.50703 * 120.10942 * 179.97438 * 21 20 18 23 23 H 1.09004 * 109.46995 * 270.78480 * 1 2 3 24 24 H 1.08994 * 109.47246 * 30.78933 * 1 2 3 25 25 H 1.08995 * 109.47309 * 150.78997 * 1 2 3 26 26 H 1.09000 * 109.46581 * 205.55471 * 4 3 2 27 27 H 1.08996 * 109.46813 * 325.55089 * 4 3 2 28 28 H 0.97010 * 119.99645 * 179.97438 * 8 7 5 29 29 H 1.08001 * 120.12250 * 179.76628 * 17 16 15 30 30 H 1.08999 * 109.47829 * 270.02735 * 19 18 17 31 31 H 1.09008 * 109.46934 * 30.03022 * 19 18 17 32 32 H 1.09001 * 109.46920 * 150.02111 * 19 18 17 33 33 H 1.08002 * 119.66918 * 179.97438 * 20 18 17 34 34 H 1.09002 * 109.47152 * 90.00084 * 22 21 20 35 35 H 1.09001 * 109.46980 * 330.00184 * 22 21 20 36 36 H 1.09004 * 109.47113 * 210.00165 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0791 0.0000 4 6 1.8281 2.5085 -0.0127 5 6 1.5527 2.9587 1.3988 6 1 1.7083 2.2780 2.2228 7 6 1.1032 4.2398 1.6385 8 7 0.9142 5.0688 0.6352 9 14 0.7611 4.7977 3.3882 10 1 1.9937 5.3878 3.9694 11 1 -0.3194 5.8163 3.3807 12 1 0.3373 3.6325 4.2053 13 7 3.6170 0.6891 0.0019 14 1 4.3775 1.2913 -0.0043 15 6 3.6967 -0.6855 0.0147 16 6 2.3784 -1.1775 0.0161 17 6 2.1488 -2.5542 0.0350 18 6 3.2075 -3.4184 0.0468 19 6 2.9590 -4.9046 0.0678 20 6 4.5096 -2.9383 0.0407 21 6 4.7589 -1.5832 0.0221 22 6 6.1778 -1.0755 0.0162 23 1 -0.3633 0.0141 1.0276 24 1 -0.3633 0.8828 -0.5260 25 1 -0.3634 -0.8969 -0.5015 26 1 2.5960 3.1441 -0.4536 27 1 0.9141 2.5809 -0.6021 28 1 0.5975 5.9702 0.8038 29 1 1.1382 -2.9352 0.0400 30 1 2.8989 -5.2485 1.1004 31 1 2.0213 -5.1235 -0.4432 32 1 3.7769 -5.4169 -0.4388 33 1 5.3359 -3.6337 0.0506 34 1 6.5208 -0.9674 -1.0128 35 1 6.8193 -1.7839 0.5404 36 1 6.2197 -0.1081 0.5168 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213496306.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:39 Heat of formation + Delta-G solvation = 6.808281 kcal Electronic energy + Delta-G solvation = -16862.352190 eV Core-core repulsion = 14309.704941 eV Total energy + Delta-G solvation = -2552.647250 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.19893 -38.51998 -35.41829 -34.66768 -32.76788 -32.23942 -29.94321 -27.97628 -27.08050 -26.83371 -25.02373 -21.84764 -21.43749 -19.68655 -18.61796 -18.37740 -16.91441 -16.31196 -15.93928 -15.70365 -14.82290 -14.55395 -14.41829 -14.24960 -13.98520 -13.88710 -13.57960 -13.41231 -13.35354 -13.16978 -12.88790 -12.73214 -12.58056 -12.53656 -12.16097 -11.86442 -11.77382 -11.46341 -11.43378 -10.64427 -10.12543 -8.81518 -8.35808 -8.15181 -6.37016 0.30312 0.78797 1.38109 1.39293 1.50716 1.88862 2.34483 2.41594 2.99642 3.07808 3.84683 3.98508 4.06572 4.28400 4.43856 4.46466 4.58821 4.68147 4.73388 4.78049 4.83595 4.94573 4.97485 5.00038 5.10782 5.15165 5.19945 5.24707 5.31187 5.36147 5.44783 5.67255 5.70922 5.87065 6.00702 6.09657 6.18434 6.42545 6.71633 6.80920 7.32022 8.84894 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.030617 B = 0.005815 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.297424 B = 4813.829526 C = 5182.678454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.217 4.217 3 C 0.108 3.892 4 C 0.084 3.916 5 C -0.526 4.526 6 H 0.049 0.951 7 C 0.013 3.987 8 N -0.925 5.925 9 Si 0.963 3.037 10 H -0.272 1.272 11 H -0.277 1.277 12 H -0.270 1.270 13 N -0.590 5.590 14 H 0.415 0.585 15 C 0.067 3.933 16 C -0.116 4.116 17 C -0.098 4.098 18 C -0.117 4.117 19 C -0.101 4.101 20 C -0.112 4.112 21 C -0.103 4.103 22 C -0.106 4.106 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.008 0.992 27 H 0.027 0.973 28 H 0.267 0.733 29 H 0.126 0.874 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.151 0.849 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.752 -16.039 -1.224 17.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.224 4.224 3 C -0.001 4.001 4 C 0.047 3.953 5 C -0.564 4.564 6 H 0.067 0.933 7 C -0.186 4.186 8 N -0.564 5.564 9 Si 0.787 3.213 10 H -0.198 1.198 11 H -0.202 1.202 12 H -0.194 1.194 13 N -0.193 5.193 14 H 0.253 0.747 15 C -0.040 4.040 16 C -0.121 4.121 17 C -0.116 4.116 18 C -0.118 4.118 19 C -0.157 4.157 20 C -0.131 4.131 21 C -0.105 4.105 22 C -0.163 4.163 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.026 0.974 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.144 0.856 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.169 0.831 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.775 -15.763 -1.274 17.204 hybrid contribution -0.048 1.373 0.703 1.543 sum 6.727 -14.390 -0.572 15.895 Atomic orbital electron populations 1.19905 0.89230 1.01401 1.00978 1.20253 0.95970 0.90377 1.15763 1.20814 0.82864 0.96951 0.99469 1.17726 0.95623 0.84923 0.97058 1.21194 1.45236 0.97662 0.92324 0.93312 1.25801 0.94870 0.96509 1.01431 1.70054 1.46583 1.07046 1.32756 0.85480 0.78196 0.78108 0.79491 1.19778 1.20213 1.19438 1.41727 1.07059 1.05126 1.65357 0.74743 1.18460 0.95909 0.83252 1.06391 1.19387 0.92195 0.93926 1.06550 1.20265 0.99656 0.90019 1.01692 1.19688 0.92518 0.97137 1.02436 1.20717 1.02988 0.89294 1.02720 1.20864 0.97073 0.93229 1.01942 1.19227 0.93862 0.92477 1.04966 1.20710 0.91407 1.01336 1.02830 0.92949 0.93174 0.90910 0.97391 0.95529 0.92382 0.85601 0.90830 0.91324 0.90229 0.83091 0.90511 0.89176 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.25 10.16 71.24 0.72 -1.53 16 2 C -0.22 -9.46 6.31 -18.62 -0.12 -9.58 16 3 C 0.11 4.99 6.27 40.87 0.26 5.25 16 4 C 0.08 4.46 5.21 29.10 0.15 4.61 16 5 C -0.53 -29.74 9.09 25.60 0.23 -29.50 16 6 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 7 C 0.01 0.72 5.46 84.65 0.46 1.18 16 8 N -0.92 -54.28 13.29 21.45 0.28 -54.00 16 9 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 N -0.59 -23.73 6.07 -175.90 -1.07 -24.80 16 14 H 0.42 14.89 8.86 -92.71 -0.82 14.07 16 15 C 0.07 2.49 6.95 39.03 0.27 2.76 16 16 C -0.12 -4.53 6.35 -20.20 -0.13 -4.66 16 17 C -0.10 -3.14 9.67 22.23 0.22 -2.93 16 18 C -0.12 -3.07 5.85 -20.10 -0.12 -3.19 16 19 C -0.10 -1.79 9.99 71.24 0.71 -1.08 16 20 C -0.11 -2.86 9.31 22.30 0.21 -2.66 16 21 C -0.10 -3.04 5.89 -19.77 -0.12 -3.16 16 22 C -0.11 -2.38 10.02 71.24 0.71 -1.67 16 23 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.05 2.04 7.17 -2.39 -0.02 2.03 16 25 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.03 1.49 7.20 -2.39 -0.02 1.47 16 28 H 0.27 14.72 8.31 -92.70 -0.77 13.94 16 29 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.13 8.08 -2.38 -0.02 1.11 16 32 H 0.08 1.12 8.08 -2.39 -0.02 1.10 16 33 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.09 1.56 8.09 -2.39 -0.02 1.54 16 36 H 0.05 1.22 7.98 -2.38 -0.02 1.20 16 Total: -1.00 -65.17 305.09 4.96 -60.21 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.25 Total: 18.76 kcal Atomic # 6 Polarization: -49.61 SS G_CDS: 3.47 Total: -46.15 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -0.78 Total: -78.79 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -65.17 4.96 -60.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213496306.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.020 kcal (2) G-P(sol) polarization free energy of solvation -65.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds