Wall clock time and date at job start Mon Mar 30 2020 06:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34239 * 126.50201 * 2 1 4 4 C 1.50699 * 125.03063 * 359.97438 * 3 2 1 5 5 C 1.50707 * 109.47398 * 84.72434 * 4 3 2 6 6 H 1.07997 * 119.99591 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00048 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00153 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99875 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47374 * 90.00068 * 9 7 5 11 11 H 1.48496 * 109.47154 * 210.00281 * 9 7 5 12 12 H 1.48506 * 109.47130 * 330.00069 * 9 7 5 13 13 N 1.36824 * 109.92999 * 179.71353 * 3 2 1 14 14 H 0.97009 * 125.06106 * 180.28670 * 13 3 2 15 15 C 1.37681 * 109.87656 * 0.26628 * 13 3 2 16 16 C 1.39123 * 133.51310 * 179.97438 * 15 13 3 17 17 C 1.37750 * 119.78334 * 180.02562 * 16 15 13 18 18 C 1.50700 * 119.66756 * 179.97438 * 17 16 15 19 19 C 1.38835 * 120.66194 * 359.96769 * 17 16 15 20 20 C 1.36623 * 120.53000 * 0.02562 * 19 17 16 21 21 C 1.50706 * 120.11465 * 180.02562 * 20 19 17 22 22 C 1.39628 * 119.76425 * 359.97438 * 20 19 17 23 23 H 1.09001 * 109.46983 * 95.97106 * 1 2 3 24 24 H 1.09000 * 109.47251 * 215.97234 * 1 2 3 25 25 H 1.09004 * 109.46844 * 335.97246 * 1 2 3 26 26 H 1.08992 * 109.47749 * 324.72142 * 4 3 2 27 27 H 1.09001 * 109.47010 * 204.71824 * 4 3 2 28 28 H 0.97005 * 119.99811 * 179.97438 * 8 7 5 29 29 H 1.08000 * 120.10825 * 0.02562 * 16 15 13 30 30 H 1.08997 * 109.46908 * 269.97935 * 18 17 16 31 31 H 1.09001 * 109.47136 * 29.98607 * 18 17 16 32 32 H 1.08999 * 109.46832 * 149.98410 * 18 17 16 33 33 H 1.08000 * 119.73214 * 180.02562 * 19 17 16 34 34 H 1.08996 * 109.47085 * 263.93412 * 21 20 19 35 35 H 1.09002 * 109.47206 * 23.93778 * 21 20 19 36 36 H 1.09001 * 109.46813 * 143.93658 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3056 1.0791 0.0000 4 6 1.8282 2.5084 -0.0006 5 6 1.5447 2.9440 1.4141 6 1 1.6947 2.2545 2.2316 7 6 1.0937 4.2226 1.6644 8 7 0.9106 5.0620 0.6688 9 14 0.7416 4.7622 3.4178 10 1 1.9706 5.3461 4.0124 11 1 -0.3389 5.7808 3.4147 12 1 0.3130 3.5884 4.2203 13 7 3.6170 0.6888 0.0064 14 1 4.3776 1.2910 0.0117 15 6 3.6964 -0.6857 0.0048 16 6 4.7589 -1.5838 0.0087 17 6 4.5096 -2.9386 0.0050 18 6 5.6625 -3.9091 0.0086 19 6 3.2070 -3.4188 -0.0020 20 6 2.1487 -2.5547 -0.0057 21 6 0.7385 -3.0863 -0.0127 22 6 2.3784 -1.1775 -0.0021 23 1 -0.3633 -0.1069 -1.0221 24 1 -0.3634 -0.8317 0.6036 25 1 -0.3633 0.9387 0.4185 26 1 0.9177 2.5873 -0.5944 27 1 2.5987 3.1486 -0.4302 28 1 0.5929 5.9615 0.8449 29 1 5.7757 -1.2201 0.0146 30 1 5.9450 -4.1415 -1.0181 31 1 6.5112 -3.4632 0.5271 32 1 5.3649 -4.8248 0.5196 33 1 3.0288 -4.4840 -0.0044 34 1 0.3649 -3.1116 -1.0363 35 1 0.7280 -4.0938 0.4031 36 1 0.1029 -2.4377 0.5902 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213496382.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:42 Heat of formation + Delta-G solvation = 9.242820 kcal Electronic energy + Delta-G solvation = -16918.262044 eV Core-core repulsion = 14365.720364 eV Total energy + Delta-G solvation = -2552.541680 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.18114 -38.53310 -35.39657 -34.83438 -32.94108 -31.57621 -30.04399 -28.43858 -27.57056 -26.33001 -24.31740 -22.63864 -21.07520 -19.80559 -18.57487 -17.89138 -17.13999 -16.51865 -15.88171 -15.68003 -14.97449 -14.51499 -14.34204 -14.24808 -14.00358 -13.90264 -13.56230 -13.43091 -13.23842 -13.14462 -12.89552 -12.64812 -12.60157 -12.50208 -12.06361 -11.82800 -11.76276 -11.40443 -11.33608 -10.64480 -10.08525 -8.89415 -8.35690 -8.09871 -6.36852 0.31010 0.80698 1.38329 1.39348 1.50853 1.89774 2.35120 2.41634 2.99281 3.07971 3.87567 4.06869 4.07413 4.31156 4.44884 4.46382 4.63698 4.65915 4.78594 4.82996 4.88561 4.93356 4.96819 4.99982 5.07070 5.16068 5.24309 5.29663 5.37415 5.41670 5.45361 5.68286 5.78802 5.86142 6.01682 6.09995 6.21017 6.44408 6.72106 6.81855 7.32302 8.85142 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.031459 B = 0.005822 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.820571 B = 4808.318815 C = 5167.079733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.206 4.206 3 C 0.099 3.901 4 C 0.085 3.915 5 C -0.526 4.526 6 H 0.049 0.951 7 C 0.013 3.987 8 N -0.925 5.925 9 Si 0.963 3.037 10 H -0.273 1.273 11 H -0.277 1.277 12 H -0.269 1.269 13 N -0.593 5.593 14 H 0.416 0.584 15 C 0.077 3.923 16 C -0.152 4.152 17 C -0.073 4.073 18 C -0.103 4.103 19 C -0.158 4.158 20 C -0.050 4.050 21 C -0.113 4.113 22 C -0.129 4.129 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.025 0.975 27 H 0.007 0.993 28 H 0.267 0.733 29 H 0.131 0.869 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.146 0.854 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.059 -16.663 -1.311 17.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.212 4.212 3 C -0.009 4.009 4 C 0.048 3.952 5 C -0.564 4.564 6 H 0.067 0.933 7 C -0.186 4.186 8 N -0.565 5.565 9 Si 0.787 3.213 10 H -0.199 1.199 11 H -0.202 1.202 12 H -0.194 1.194 13 N -0.196 5.196 14 H 0.253 0.747 15 C -0.030 4.030 16 C -0.172 4.172 17 C -0.074 4.074 18 C -0.159 4.159 19 C -0.177 4.177 20 C -0.051 4.051 21 C -0.169 4.169 22 C -0.134 4.134 23 H 0.080 0.920 24 H 0.094 0.906 25 H 0.066 0.934 26 H 0.043 0.957 27 H 0.025 0.975 28 H 0.076 0.924 29 H 0.148 0.852 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.163 0.837 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.074 -16.382 -1.355 17.203 hybrid contribution 0.207 1.452 0.659 1.608 sum 5.281 -14.930 -0.697 15.851 Atomic orbital electron populations 1.20128 0.89255 1.01778 1.01245 1.20203 0.95923 0.90181 1.14903 1.20812 0.82835 0.96994 1.00251 1.17705 0.95524 0.84977 0.97016 1.21208 1.45131 0.97634 0.92422 0.93282 1.25802 0.94905 0.96440 1.01471 1.70053 1.46628 1.06778 1.33007 0.85482 0.78171 0.78129 0.79505 1.19858 1.20210 1.19362 1.41778 1.07230 1.05136 1.65427 0.74674 1.18626 0.96349 0.83314 1.04733 1.20072 0.96364 0.91981 1.08832 1.19879 0.95997 0.92902 0.98621 1.20764 0.94692 0.97443 1.03051 1.20669 0.91131 0.99932 1.05952 1.19385 0.97531 0.90170 0.98006 1.20903 0.91753 1.01523 1.02745 1.19249 0.92136 0.93552 1.08419 0.91956 0.90624 0.93371 0.95651 0.97507 0.92393 0.85158 0.90251 0.91154 0.90116 0.83651 0.90684 0.89670 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.56 9.48 71.24 0.68 -1.88 16 2 C -0.21 -8.87 6.31 -18.63 -0.12 -8.98 16 3 C 0.10 4.60 6.27 40.87 0.26 4.85 16 4 C 0.09 4.53 4.93 29.10 0.14 4.67 16 5 C -0.53 -29.72 9.09 25.60 0.23 -29.48 16 6 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 7 C 0.01 0.72 5.46 84.65 0.46 1.18 16 8 N -0.93 -54.36 13.29 21.44 0.28 -54.07 16 9 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 N -0.59 -24.05 6.07 -175.92 -1.07 -25.11 16 14 H 0.42 14.99 8.96 -92.70 -0.83 14.16 16 15 C 0.08 2.91 7.28 39.03 0.28 3.19 16 16 C -0.15 -4.63 9.71 22.37 0.22 -4.41 16 17 C -0.07 -1.89 5.88 -19.84 -0.12 -2.00 16 18 C -0.10 -1.76 9.99 71.24 0.71 -1.04 16 19 C -0.16 -4.17 9.24 22.03 0.20 -3.96 16 20 C -0.05 -1.58 5.87 -19.90 -0.12 -1.70 16 21 C -0.11 -2.80 9.55 71.24 0.68 -2.12 16 22 C -0.13 -5.00 6.15 -20.20 -0.12 -5.12 16 23 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.08 2.49 5.65 -2.39 -0.01 2.48 16 25 H 0.05 2.06 7.54 -2.38 -0.02 2.04 16 26 H 0.03 1.42 7.79 -2.39 -0.02 1.40 16 27 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.27 14.73 8.31 -92.70 -0.77 13.96 16 29 H 0.13 3.35 8.06 -2.91 -0.02 3.33 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.09 8.08 -2.39 -0.02 1.07 16 32 H 0.08 1.12 8.08 -2.39 -0.02 1.10 16 33 H 0.15 2.85 8.05 -2.91 -0.02 2.83 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.08 1.62 8.03 -2.39 -0.02 1.60 16 36 H 0.06 1.72 5.41 -2.39 -0.01 1.71 16 Total: -1.00 -65.36 299.70 4.89 -60.47 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.25 Total: 19.57 kcal Atomic # 6 Polarization: -50.20 SS G_CDS: 3.39 Total: -46.81 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -0.78 Total: -79.19 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -65.36 4.89 -60.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213496382.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.712 kcal (2) G-P(sol) polarization free energy of solvation -65.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds