Wall clock time and date at job start Mon Mar 30 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34239 * 126.49503 * 2 1 4 4 C 1.50690 * 125.03472 * 0.03569 * 3 2 1 5 5 C 1.50706 * 109.46972 * 85.00140 * 4 3 2 6 6 H 1.07998 * 119.99945 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99868 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00022 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00206 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47359 * 89.99418 * 9 7 5 11 11 H 1.48496 * 109.47469 * 209.99714 * 9 7 5 12 12 H 1.48500 * 109.46926 * 329.99819 * 9 7 5 13 13 N 1.36835 * 109.93088 * 180.30282 * 3 2 1 14 14 H 0.97005 * 125.05947 * 179.73246 * 13 3 2 15 15 C 1.37692 * 109.87852 * 359.55554 * 13 3 2 16 16 C 1.40701 * 107.14947 * 0.43234 * 15 13 3 17 17 C 1.39599 * 119.92861 * 179.72427 * 16 15 13 18 18 C 1.50696 * 120.11695 * 180.02562 * 17 16 15 19 19 C 1.36666 * 119.76276 * 359.97438 * 17 16 15 20 20 C 1.38792 * 120.52581 * 359.97438 * 19 17 16 21 21 C 1.37783 * 120.66941 * 0.02562 * 20 19 17 22 22 C 1.50697 * 120.11305 * 180.02562 * 21 20 19 23 23 H 1.08994 * 109.47607 * 95.96261 * 1 2 3 24 24 H 1.09008 * 109.46960 * 215.96004 * 1 2 3 25 25 H 1.09001 * 109.47202 * 335.95816 * 1 2 3 26 26 H 1.08999 * 109.47387 * 325.00203 * 4 3 2 27 27 H 1.09004 * 109.47361 * 205.00163 * 4 3 2 28 28 H 0.96999 * 120.00098 * 180.02562 * 8 7 5 29 29 H 1.08990 * 109.47484 * 83.95398 * 18 17 16 30 30 H 1.09008 * 109.46961 * 203.95616 * 18 17 16 31 31 H 1.09004 * 109.47044 * 323.94813 * 18 17 16 32 32 H 1.07998 * 119.73186 * 179.97438 * 19 17 16 33 33 H 1.07999 * 119.66070 * 180.02562 * 20 19 17 34 34 H 1.09004 * 109.47126 * 89.99591 * 22 21 20 35 35 H 1.08992 * 109.47630 * 210.00211 * 22 21 20 36 36 H 1.09000 * 109.47150 * 330.00513 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3054 1.0792 0.0000 4 6 1.8280 2.5084 0.0008 5 6 1.5522 2.9451 1.4165 6 1 1.7075 2.2566 2.2340 7 6 1.1025 4.2240 1.6683 8 7 0.8613 4.6049 2.9037 9 14 0.8345 5.4151 0.2545 10 1 -0.5596 5.2893 -0.2414 11 1 1.0688 6.8037 0.7258 12 1 1.7813 5.0992 -0.8451 13 7 3.6170 0.6891 -0.0068 14 1 4.3774 1.2913 -0.0118 15 6 3.6966 -0.6855 -0.0014 16 6 2.3784 -1.1775 -0.0009 17 6 2.1489 -2.5545 -0.0017 18 6 0.7388 -3.0860 -0.0018 19 6 3.2076 -3.4187 -0.0034 20 6 4.5098 -2.9384 -0.0050 21 6 4.7590 -1.5833 -0.0043 22 6 6.1778 -1.0755 -0.0066 23 1 -0.3634 -0.1067 -1.0220 24 1 -0.3633 -0.8319 0.6035 25 1 -0.3634 0.9385 0.4187 26 1 0.9141 2.5866 -0.5881 27 1 2.5961 3.1483 -0.4337 28 1 0.5446 5.5045 3.0808 29 1 0.3605 -3.1123 -1.0235 30 1 0.7302 -4.0933 0.4150 31 1 0.1059 -2.4371 0.6035 32 1 3.0295 -4.4839 -0.0036 33 1 5.3360 -3.6339 -0.0068 34 1 6.5179 -0.9522 -1.0348 35 1 6.2211 -0.1156 0.5080 36 1 6.8208 -1.7915 0.5053 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213496466.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:38 Heat of formation + Delta-G solvation = 29.380128 kcal Electronic energy + Delta-G solvation = -17080.225040 eV Core-core repulsion = 14528.556579 eV Total energy + Delta-G solvation = -2551.668461 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.87997 -37.06301 -34.15156 -33.12587 -31.19025 -30.30854 -29.09365 -27.72739 -25.65985 -24.33170 -22.83194 -21.49320 -19.80993 -18.19230 -16.89849 -16.58737 -15.59096 -14.75680 -14.52025 -14.24600 -13.95122 -13.21848 -12.96969 -12.89372 -12.78283 -12.49782 -12.25016 -12.12751 -12.03926 -11.75379 -11.57225 -11.31871 -10.82511 -10.77664 -10.69140 -10.46446 -10.07947 -10.00779 -9.45794 -8.69469 -8.67241 -7.56278 -6.80077 -6.15736 -4.16569 1.55920 2.08156 3.21694 3.30077 3.30728 3.38969 3.74145 4.24419 4.32398 5.04705 5.15541 5.17189 5.29124 5.43609 5.53329 5.63119 5.69959 5.79268 5.88576 5.93533 5.97155 6.07286 6.16618 6.22226 6.39236 6.45982 6.51472 6.71072 6.75533 6.80127 6.85521 6.93850 7.13916 7.29698 7.52516 7.60187 7.82741 8.15588 8.41596 8.90106 9.42691 10.96786 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.028390 B = 0.006648 C = 0.005817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.024861 B = 4210.683612 C = 4811.981699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.196 4.196 3 C 0.141 3.859 4 C 0.038 3.962 5 C -0.516 4.516 6 H 0.076 0.924 7 C 0.072 3.928 8 N -0.895 5.895 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.266 1.266 13 N -0.589 5.589 14 H 0.410 0.590 15 C 0.093 3.907 16 C -0.089 4.089 17 C -0.048 4.048 18 C -0.114 4.114 19 C -0.155 4.155 20 C -0.114 4.114 21 C -0.103 4.103 22 C -0.107 4.107 23 H 0.048 0.952 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.042 0.958 27 H 0.026 0.974 28 H 0.265 0.735 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.777 -12.010 -7.552 14.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.202 4.202 3 C 0.033 3.967 4 C 0.000 4.000 5 C -0.554 4.554 6 H 0.094 0.906 7 C -0.130 4.130 8 N -0.533 5.533 9 Si 0.702 3.298 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 N -0.191 5.191 14 H 0.247 0.753 15 C -0.014 4.014 16 C -0.094 4.094 17 C -0.049 4.049 18 C -0.171 4.171 19 C -0.175 4.175 20 C -0.133 4.133 21 C -0.106 4.106 22 C -0.164 4.164 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.784 -11.739 -7.435 14.696 hybrid contribution 0.356 1.010 -0.517 1.190 sum 5.140 -10.729 -7.952 14.310 Atomic orbital electron populations 1.20156 0.90058 1.02664 1.00156 1.19829 0.95031 0.89536 1.15766 1.20694 0.81446 0.97220 0.97371 1.18514 0.96589 0.85606 0.99319 1.20863 1.45407 0.98580 0.90567 0.90589 1.24967 0.94672 0.97856 0.95502 1.69891 1.45274 1.19197 1.18918 0.86846 0.79313 0.80646 0.82955 1.19862 1.21142 1.19085 1.41799 1.07731 1.04488 1.65096 0.75312 1.18000 0.94915 0.83442 1.05087 1.18982 0.92121 0.92582 1.05688 1.18979 0.95450 0.91118 0.99304 1.20859 0.93697 1.00485 1.02029 1.20331 0.92103 0.98536 1.06488 1.20463 0.96520 0.93305 1.03044 1.18755 0.92955 0.92290 1.06625 1.20643 0.93116 1.01076 1.01598 0.93320 0.92507 0.90690 0.94014 0.95622 0.92454 0.91670 0.92352 0.90807 0.86879 0.86632 0.91862 0.92435 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.33 9.48 36.01 0.34 -0.99 16 2 C -0.20 -4.00 6.31 -102.71 -0.65 -4.65 16 3 C 0.14 3.01 6.27 -81.77 -0.51 2.50 16 4 C 0.04 0.87 4.01 -29.04 -0.12 0.75 16 5 C -0.52 -14.17 9.65 -34.44 -0.33 -14.50 16 6 H 0.08 2.33 7.98 -52.49 -0.42 1.91 16 7 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 8 N -0.89 -26.73 13.96 55.43 0.77 -25.95 16 9 Si 0.88 20.58 27.47 -169.99 -4.67 15.91 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 13 N -0.59 -11.19 6.07 -6.96 -0.04 -11.23 16 14 H 0.41 6.81 8.88 -40.82 -0.36 6.45 16 15 C 0.09 1.73 6.95 -83.99 -0.58 1.14 16 16 C -0.09 -1.70 6.15 -105.14 -0.65 -2.35 16 17 C -0.05 -0.79 5.87 -104.68 -0.61 -1.41 16 18 C -0.11 -1.55 9.55 36.00 0.34 -1.20 16 19 C -0.16 -2.28 9.60 -39.94 -0.38 -2.67 16 20 C -0.11 -1.65 9.67 -39.54 -0.38 -2.03 16 21 C -0.10 -1.63 5.89 -104.47 -0.62 -2.24 16 22 C -0.11 -1.33 10.02 36.00 0.36 -0.97 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.93 5.64 -51.92 -0.29 0.64 16 25 H 0.07 1.49 7.53 -51.93 -0.39 1.10 16 26 H 0.04 0.94 7.20 -51.93 -0.37 0.57 16 27 H 0.03 0.58 7.20 -51.93 -0.37 0.20 16 28 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.66 8.04 -51.92 -0.42 0.25 16 31 H 0.07 1.04 5.42 -51.93 -0.28 0.76 16 32 H 0.11 1.36 8.05 -52.49 -0.42 0.94 16 33 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.71 8.00 -51.93 -0.42 0.30 16 36 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 LS Contribution 295.95 15.07 4.46 4.46 Total: -1.00 -30.52 295.95 -8.39 -38.91 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.03 Total: 4.60 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -3.89 Total: -26.69 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.73 Total: -37.19 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.67 Total: 15.91 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.52 -8.39 -38.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213496466.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.293 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds