Wall clock time and date at job start Mon Mar 30 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34239 * 126.49503 * 2 1 4 4 C 1.50690 * 125.03472 * 0.03569 * 3 2 1 5 5 C 1.50706 * 109.46972 * 85.00140 * 4 3 2 6 6 H 1.07998 * 119.99945 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99868 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00022 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00206 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47359 * 89.99418 * 9 7 5 11 11 H 1.48496 * 109.47469 * 209.99714 * 9 7 5 12 12 H 1.48500 * 109.46926 * 329.99819 * 9 7 5 13 13 N 1.36835 * 109.93088 * 180.30282 * 3 2 1 14 14 H 0.97005 * 125.05947 * 179.73246 * 13 3 2 15 15 C 1.37692 * 109.87852 * 359.55554 * 13 3 2 16 16 C 1.40701 * 107.14947 * 0.43234 * 15 13 3 17 17 C 1.39599 * 119.92861 * 179.72427 * 16 15 13 18 18 C 1.50696 * 120.11695 * 180.02562 * 17 16 15 19 19 C 1.36666 * 119.76276 * 359.97438 * 17 16 15 20 20 C 1.38792 * 120.52581 * 359.97438 * 19 17 16 21 21 C 1.37783 * 120.66941 * 0.02562 * 20 19 17 22 22 C 1.50697 * 120.11305 * 180.02562 * 21 20 19 23 23 H 1.08994 * 109.47607 * 95.96261 * 1 2 3 24 24 H 1.09008 * 109.46960 * 215.96004 * 1 2 3 25 25 H 1.09001 * 109.47202 * 335.95816 * 1 2 3 26 26 H 1.08999 * 109.47387 * 325.00203 * 4 3 2 27 27 H 1.09004 * 109.47361 * 205.00163 * 4 3 2 28 28 H 0.96999 * 120.00098 * 180.02562 * 8 7 5 29 29 H 1.08990 * 109.47484 * 83.95398 * 18 17 16 30 30 H 1.09008 * 109.46961 * 203.95616 * 18 17 16 31 31 H 1.09004 * 109.47044 * 323.94813 * 18 17 16 32 32 H 1.07998 * 119.73186 * 179.97438 * 19 17 16 33 33 H 1.07999 * 119.66070 * 180.02562 * 20 19 17 34 34 H 1.09004 * 109.47126 * 89.99591 * 22 21 20 35 35 H 1.08992 * 109.47630 * 210.00211 * 22 21 20 36 36 H 1.09000 * 109.47150 * 330.00513 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3054 1.0792 0.0000 4 6 1.8280 2.5084 0.0008 5 6 1.5522 2.9451 1.4165 6 1 1.7075 2.2566 2.2340 7 6 1.1025 4.2240 1.6683 8 7 0.8613 4.6049 2.9037 9 14 0.8345 5.4151 0.2545 10 1 -0.5596 5.2893 -0.2414 11 1 1.0688 6.8037 0.7258 12 1 1.7813 5.0992 -0.8451 13 7 3.6170 0.6891 -0.0068 14 1 4.3774 1.2913 -0.0118 15 6 3.6966 -0.6855 -0.0014 16 6 2.3784 -1.1775 -0.0009 17 6 2.1489 -2.5545 -0.0017 18 6 0.7388 -3.0860 -0.0018 19 6 3.2076 -3.4187 -0.0034 20 6 4.5098 -2.9384 -0.0050 21 6 4.7590 -1.5833 -0.0043 22 6 6.1778 -1.0755 -0.0066 23 1 -0.3634 -0.1067 -1.0220 24 1 -0.3633 -0.8319 0.6035 25 1 -0.3634 0.9385 0.4187 26 1 0.9141 2.5866 -0.5881 27 1 2.5961 3.1483 -0.4337 28 1 0.5446 5.5045 3.0808 29 1 0.3605 -3.1123 -1.0235 30 1 0.7302 -4.0933 0.4150 31 1 0.1059 -2.4371 0.6035 32 1 3.0295 -4.4839 -0.0036 33 1 5.3360 -3.6339 -0.0068 34 1 6.5179 -0.9522 -1.0348 35 1 6.2211 -0.1156 0.5080 36 1 6.8208 -1.7915 0.5053 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213496466.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:38 Heat of formation + Delta-G solvation = 12.299924 kcal Electronic energy + Delta-G solvation = -17080.965694 eV Core-core repulsion = 14528.556579 eV Total energy + Delta-G solvation = -2552.409114 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.24273 -38.35276 -35.49285 -35.03649 -32.75028 -31.91709 -30.18184 -29.24819 -27.14989 -25.50360 -24.63267 -22.78097 -21.23165 -19.64779 -19.02723 -17.90525 -17.02340 -16.32156 -15.93856 -15.66134 -15.29709 -14.77519 -14.33466 -14.21377 -14.08898 -13.89724 -13.57543 -13.50453 -13.38602 -13.27003 -13.03823 -12.54114 -12.42694 -12.37745 -12.09226 -11.83548 -11.76001 -11.58831 -11.38446 -10.81989 -10.00399 -8.91668 -8.32682 -8.18501 -6.38728 0.29373 0.82458 1.36855 1.37420 1.48573 1.87183 2.32732 2.35146 2.99753 3.02210 3.87000 3.98455 4.10658 4.28327 4.36969 4.38980 4.53781 4.67929 4.71899 4.78344 4.79875 4.88535 4.91938 4.92698 4.99498 5.05274 5.15271 5.21411 5.31412 5.40626 5.47012 5.49489 5.71670 5.86709 6.01733 6.15802 6.20404 6.42488 6.64373 6.81721 7.24619 8.84445 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.028390 B = 0.006648 C = 0.005817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.024861 B = 4210.683612 C = 4811.981699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.205 4.205 3 C 0.102 3.898 4 C 0.048 3.952 5 C -0.518 4.518 6 H 0.024 0.976 7 C 0.013 3.987 8 N -0.946 5.946 9 Si 0.950 3.050 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.245 1.245 13 N -0.590 5.590 14 H 0.416 0.584 15 C 0.075 3.925 16 C -0.123 4.123 17 C -0.062 4.062 18 C -0.112 4.112 19 C -0.154 4.154 20 C -0.107 4.107 21 C -0.117 4.117 22 C -0.105 4.105 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.034 0.966 28 H 0.269 0.731 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.679 -13.849 -9.501 17.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.211 4.211 3 C -0.006 4.006 4 C 0.011 3.989 5 C -0.556 4.556 6 H 0.042 0.958 7 C -0.185 4.185 8 N -0.586 5.586 9 Si 0.772 3.228 10 H -0.187 1.187 11 H -0.209 1.209 12 H -0.168 1.168 13 N -0.193 5.193 14 H 0.254 0.746 15 C -0.033 4.033 16 C -0.128 4.128 17 C -0.063 4.063 18 C -0.169 4.169 19 C -0.173 4.173 20 C -0.125 4.125 21 C -0.120 4.120 22 C -0.162 4.162 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.164 0.836 33 H 0.170 0.830 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.702 -13.598 -9.395 17.484 hybrid contribution 0.134 1.368 0.168 1.385 sum 5.836 -12.229 -9.227 16.394 Atomic orbital electron populations 1.20160 0.89193 1.01820 1.01532 1.20231 0.95992 0.90276 1.14590 1.20483 0.82912 0.96547 1.00664 1.18276 0.97096 0.87223 0.96351 1.20988 1.45096 0.97899 0.91647 0.95793 1.25934 0.94181 0.99916 0.98477 1.70054 1.46884 1.19996 1.21666 0.85672 0.80103 0.77498 0.79507 1.18678 1.20881 1.16835 1.41707 1.07096 1.05140 1.65320 0.74649 1.18466 0.95927 0.83277 1.05580 1.19271 0.92178 0.93612 1.07712 1.19388 0.97555 0.90264 0.99077 1.20884 0.91882 1.01396 1.02692 1.20789 0.91735 1.00025 1.04712 1.20982 0.97707 0.93269 1.00589 1.19216 0.93829 0.92619 1.06307 1.20684 0.91526 1.01235 1.02713 0.91179 0.91088 0.93274 0.93335 0.94762 0.92242 0.90580 0.89861 0.91967 0.83561 0.83019 0.90484 0.93178 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.58 9.48 71.24 0.68 -1.91 16 2 C -0.20 -8.54 6.31 -18.63 -0.12 -8.66 16 3 C 0.10 4.50 6.27 40.86 0.26 4.76 16 4 C 0.05 2.29 4.01 29.10 0.12 2.40 16 5 C -0.52 -29.77 9.65 25.60 0.25 -29.52 16 6 H 0.02 1.57 7.98 -2.91 -0.02 1.55 16 7 C 0.01 0.72 5.47 84.65 0.46 1.18 16 8 N -0.95 -58.71 13.96 21.45 0.30 -58.41 16 9 Si 0.95 42.71 27.47 68.60 1.88 44.60 16 10 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16 13 N -0.59 -22.90 6.07 -175.92 -1.07 -23.97 16 14 H 0.42 14.20 8.88 -92.70 -0.82 13.38 16 15 C 0.07 2.75 6.95 39.03 0.27 3.02 16 16 C -0.12 -4.70 6.15 -20.20 -0.12 -4.82 16 17 C -0.06 -1.94 5.87 -19.91 -0.12 -2.06 16 18 C -0.11 -2.79 9.55 71.23 0.68 -2.11 16 19 C -0.15 -3.99 9.60 22.03 0.21 -3.78 16 20 C -0.11 -2.69 9.67 22.29 0.22 -2.47 16 21 C -0.12 -3.44 5.89 -19.77 -0.12 -3.56 16 22 C -0.10 -2.35 10.02 71.24 0.71 -1.64 16 23 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 24 H 0.07 2.35 5.64 -2.38 -0.01 2.34 16 25 H 0.05 2.03 7.53 -2.39 -0.02 2.01 16 26 H 0.05 2.20 7.20 -2.39 -0.02 2.18 16 27 H 0.03 1.53 7.20 -2.38 -0.02 1.52 16 28 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.08 1.62 8.04 -2.38 -0.02 1.60 16 31 H 0.06 1.68 5.42 -2.39 -0.01 1.67 16 32 H 0.15 2.79 8.05 -2.91 -0.02 2.77 16 33 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 34 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.05 1.18 8.00 -2.39 -0.02 1.16 16 36 H 0.09 1.56 8.09 -2.39 -0.02 1.54 16 Total: -1.00 -69.02 295.95 4.70 -64.32 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.21 Total: 22.63 kcal Atomic # 6 Polarization: -52.54 SS G_CDS: 3.38 Total: -49.17 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -0.77 Total: -82.38 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.88 Total: 44.60 kcal Total: -69.02 4.70 -64.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213496466.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.622 kcal (2) G-P(sol) polarization free energy of solvation -69.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds