Wall clock time and date at job start Mon Mar 30 2020 05:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.31159 * 119.99882 * 2 1 4 4 Cl 1.73591 * 120.00076 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99688 * 179.97438 * 2 1 3 6 6 N 1.46500 * 109.47168 * 275.00161 * 5 2 1 7 7 C 1.36941 * 119.99496 * 269.72461 * 6 5 2 8 8 H 1.08008 * 119.99779 * 141.64842 * 7 6 5 9 9 C 1.38807 * 120.00501 * 321.64691 * 7 6 5 10 10 N 1.31622 * 119.99897 * 339.52589 * 9 7 6 11 11 Si 1.86794 * 120.00181 * 159.53236 * 9 7 6 12 12 H 1.48502 * 109.47318 * 59.99813 * 11 9 7 13 13 H 1.48499 * 109.47284 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.46999 * 299.99661 * 11 9 7 15 15 C 1.46494 * 120.00340 * 90.00119 * 6 5 2 16 16 C 1.54262 * 110.03552 * 242.51022 * 15 6 5 17 17 C 1.54967 * 104.16081 * 217.13676 * 16 15 6 18 18 C 1.54885 * 102.77744 * 37.88119 * 17 16 15 19 19 C 1.53879 * 110.03413 * 125.28560 * 15 6 5 20 20 H 1.08996 * 109.46964 * 269.99968 * 1 2 3 21 21 H 1.09004 * 109.46908 * 29.99956 * 1 2 3 22 22 H 1.09002 * 109.47102 * 150.00061 * 1 2 3 23 23 H 1.08005 * 119.99657 * 180.02562 * 3 2 1 24 24 H 1.09003 * 109.46519 * 155.00102 * 5 2 1 25 25 H 1.09001 * 109.47148 * 35.00160 * 5 2 1 26 26 H 0.96996 * 120.00143 * 175.04508 * 10 9 7 27 27 H 1.09002 * 110.01460 * 3.90116 * 15 6 5 28 28 H 1.09005 * 110.48589 * 335.77995 * 16 15 6 29 29 H 1.09000 * 110.48759 * 98.42240 * 16 15 6 30 30 H 1.09007 * 110.71551 * 279.57368 * 17 16 15 31 31 H 1.08993 * 110.92343 * 156.29286 * 17 16 15 32 32 H 1.09002 * 110.48986 * 203.40706 * 18 17 16 33 33 H 1.09007 * 110.59907 * 80.82069 * 18 17 16 34 34 H 1.08994 * 110.03529 * 238.57124 * 19 15 6 35 35 H 1.08997 * 110.02964 * 0.02562 * 19 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1628 1.1359 0.0000 4 17 1.2949 2.6392 -0.0007 5 6 2.2605 -1.3052 0.0006 6 7 2.4004 -1.7877 1.3768 7 6 3.4918 -1.4270 2.1211 8 1 3.3798 -1.2083 3.1728 9 6 4.7420 -1.3425 1.5240 10 7 4.9748 -1.9729 0.3922 11 14 6.0942 -0.3342 2.3267 12 1 6.3787 -0.8759 3.6798 13 1 7.3236 -0.4054 1.4969 14 1 5.6553 1.0797 2.4418 15 6 1.3758 -2.6609 1.9546 16 6 0.7117 -1.9688 3.1627 17 6 0.4664 -3.1197 4.1712 18 6 1.7295 -3.9997 4.0005 19 6 2.0224 -3.9518 2.4867 20 1 -0.3633 0.0000 1.0276 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5138 23 1 3.2429 1.1358 -0.0004 24 1 3.2488 -1.1542 -0.4338 25 1 1.7131 -2.0409 -0.5886 26 1 5.8238 -1.8564 -0.0621 27 1 0.6242 -2.9022 1.2029 28 1 1.3816 -1.2231 3.5909 29 1 -0.2325 -1.5107 2.8684 30 1 -0.4319 -3.6782 3.9078 31 1 0.3969 -2.7369 5.1893 32 1 1.5275 -5.0227 4.3178 33 1 2.5652 -3.5845 4.5640 34 1 1.5839 -4.8196 1.9940 35 1 3.0986 -3.9284 2.3154 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232003406.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:12 Heat of formation + Delta-G solvation = 8.850354 kcal Electronic energy + Delta-G solvation = -16386.296530 eV Core-core repulsion = 13831.304982 eV Total energy + Delta-G solvation = -2554.991548 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.109 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -37.90785 -36.28260 -35.00125 -32.96799 -30.82240 -27.84652 -27.17631 -26.25647 -25.67585 -22.30255 -19.99021 -19.05305 -18.04648 -16.28907 -15.38614 -14.86451 -14.65810 -14.23471 -13.83558 -13.49388 -12.84089 -12.65889 -12.54170 -11.78163 -11.40524 -11.26101 -11.21121 -11.07742 -10.80048 -10.50953 -10.42790 -10.37741 -10.24203 -10.19891 -10.08888 -9.80107 -9.70151 -9.52381 -8.50305 -8.01097 -6.63094 -5.81673 -3.44457 2.77740 3.12248 3.34749 3.41048 3.44522 4.45547 5.23245 5.35914 5.42686 5.48583 5.65017 5.75808 5.81691 6.14271 6.17749 6.24493 6.24935 6.36179 6.41889 6.50242 6.53232 6.54933 6.62110 6.64927 6.85592 7.02272 7.09436 7.18162 7.34995 7.39071 7.59229 7.80023 8.48084 9.13581 9.75289 10.33943 11.14351 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.015638 B = 0.011384 C = 0.007771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.112051 B = 2458.985443 C = 3602.146790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.109 4.109 3 C -0.118 4.118 4 Cl -0.135 7.135 5 C 0.178 3.822 6 N -0.567 5.567 7 C -0.244 4.244 8 H 0.060 0.940 9 C 0.013 3.987 10 N -0.884 5.884 11 Si 0.887 3.113 12 H -0.281 1.281 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.173 3.827 16 C -0.135 4.135 17 C -0.123 4.123 18 C -0.118 4.118 19 C -0.131 4.131 20 H 0.065 0.935 21 H 0.059 0.941 22 H 0.056 0.944 23 H 0.142 0.858 24 H 0.102 0.898 25 H 0.037 0.963 26 H 0.255 0.745 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.040 0.960 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.469 0.812 0.897 7.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.113 4.113 3 C -0.163 4.163 4 Cl -0.107 7.107 5 C 0.052 3.948 6 N -0.285 5.285 7 C -0.374 4.374 8 H 0.078 0.922 9 C -0.187 4.187 10 N -0.526 5.526 11 Si 0.716 3.284 12 H -0.207 1.207 13 H -0.216 1.216 14 H -0.207 1.207 15 C 0.065 3.935 16 C -0.174 4.174 17 C -0.161 4.161 18 C -0.155 4.155 19 C -0.170 4.170 20 H 0.084 0.916 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.159 0.841 24 H 0.119 0.881 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.339 0.822 0.815 7.430 hybrid contribution 0.714 0.736 0.480 1.132 sum -6.625 1.559 1.295 6.928 Atomic orbital electron populations 1.20882 0.93229 1.01495 1.01792 1.23165 0.95905 0.97308 0.94929 1.24196 0.97469 0.83660 1.11020 1.98263 1.78268 1.37019 1.97199 1.20031 0.99910 0.87433 0.87453 1.43875 1.21292 1.51987 1.11365 1.18864 0.84593 1.39980 0.93975 0.92194 1.25133 0.96738 0.98757 0.98059 1.70043 1.24086 1.39789 1.18681 0.86615 0.81581 0.81038 0.79149 1.20652 1.21611 1.20729 1.21061 0.90152 0.89258 0.92982 1.22854 0.99484 0.97811 0.97270 1.22440 0.97553 0.97520 0.98583 1.22254 0.97407 0.97958 0.97919 1.22532 1.03490 0.97208 0.93756 0.91604 0.92190 0.92542 0.84083 0.88080 0.94468 0.93501 0.93449 0.90891 0.93555 0.92722 0.92964 0.93446 0.92009 0.94081 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 9.59 36.01 0.35 -1.59 16 2 C -0.11 -2.11 5.64 -101.10 -0.57 -2.68 16 3 C -0.12 -2.30 10.40 28.97 0.30 -2.00 16 4 Cl -0.14 -2.34 27.23 -51.86 -1.41 -3.75 16 5 C 0.18 3.90 5.43 -5.19 -0.03 3.87 16 6 N -0.57 -12.91 2.36 -165.75 -0.39 -13.30 16 7 C -0.24 -6.15 7.75 -15.06 -0.12 -6.27 16 8 H 0.06 1.56 6.95 -52.48 -0.36 1.19 16 9 C 0.01 0.35 4.97 -17.43 -0.09 0.26 16 10 N -0.88 -23.83 11.47 55.49 0.64 -23.19 16 11 Si 0.89 20.82 29.60 -169.99 -5.03 15.78 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 C 0.17 3.43 3.42 -66.82 -0.23 3.21 16 16 C -0.13 -2.44 6.43 -25.03 -0.16 -2.60 16 17 C -0.12 -1.93 6.91 -24.70 -0.17 -2.11 16 18 C -0.12 -1.99 6.83 -25.07 -0.17 -2.16 16 19 C -0.13 -2.55 6.25 -25.61 -0.16 -2.71 16 20 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 21 H 0.06 0.93 6.74 -51.93 -0.35 0.58 16 22 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 23 H 0.14 2.97 8.00 -52.48 -0.42 2.55 16 24 H 0.10 2.50 5.39 -51.93 -0.28 2.22 16 25 H 0.04 0.78 7.86 -51.93 -0.41 0.37 16 26 H 0.25 6.74 8.32 -40.82 -0.34 6.40 16 27 H 0.05 0.91 7.81 -51.93 -0.41 0.50 16 28 H 0.07 1.49 6.66 -51.93 -0.35 1.14 16 29 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 30 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 2.01 7.16 -51.93 -0.37 1.64 16 LS Contribution 295.43 15.07 4.45 4.45 Total: -1.00 -25.39 295.43 -8.25 -33.64 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -5.45 Total: 1.16 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -1.05 Total: -14.79 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.24 Total: -36.50 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.78 kcal Atomic # 17 Polarization: -2.34 SS G_CDS: -1.41 Total: -3.75 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -25.39 -8.25 -33.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232003406.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.492 kcal (2) G-P(sol) polarization free energy of solvation -25.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds