Wall clock time and date at job start Mon Mar 30 2020 05:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.31159 * 119.99882 * 2 1 4 4 Cl 1.73591 * 120.00076 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99688 * 179.97438 * 2 1 3 6 6 N 1.46500 * 109.47168 * 275.00161 * 5 2 1 7 7 C 1.36941 * 119.99496 * 269.72461 * 6 5 2 8 8 H 1.08008 * 119.99779 * 141.64842 * 7 6 5 9 9 C 1.38807 * 120.00501 * 321.64691 * 7 6 5 10 10 N 1.31622 * 119.99897 * 339.52589 * 9 7 6 11 11 Si 1.86794 * 120.00181 * 159.53236 * 9 7 6 12 12 H 1.48502 * 109.47318 * 59.99813 * 11 9 7 13 13 H 1.48499 * 109.47284 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.46999 * 299.99661 * 11 9 7 15 15 C 1.46494 * 120.00340 * 90.00119 * 6 5 2 16 16 C 1.54262 * 110.03552 * 242.51022 * 15 6 5 17 17 C 1.54967 * 104.16081 * 217.13676 * 16 15 6 18 18 C 1.54885 * 102.77744 * 37.88119 * 17 16 15 19 19 C 1.53879 * 110.03413 * 125.28560 * 15 6 5 20 20 H 1.08996 * 109.46964 * 269.99968 * 1 2 3 21 21 H 1.09004 * 109.46908 * 29.99956 * 1 2 3 22 22 H 1.09002 * 109.47102 * 150.00061 * 1 2 3 23 23 H 1.08005 * 119.99657 * 180.02562 * 3 2 1 24 24 H 1.09003 * 109.46519 * 155.00102 * 5 2 1 25 25 H 1.09001 * 109.47148 * 35.00160 * 5 2 1 26 26 H 0.96996 * 120.00143 * 175.04508 * 10 9 7 27 27 H 1.09002 * 110.01460 * 3.90116 * 15 6 5 28 28 H 1.09005 * 110.48589 * 335.77995 * 16 15 6 29 29 H 1.09000 * 110.48759 * 98.42240 * 16 15 6 30 30 H 1.09007 * 110.71551 * 279.57368 * 17 16 15 31 31 H 1.08993 * 110.92343 * 156.29286 * 17 16 15 32 32 H 1.09002 * 110.48986 * 203.40706 * 18 17 16 33 33 H 1.09007 * 110.59907 * 80.82069 * 18 17 16 34 34 H 1.08994 * 110.03529 * 238.57124 * 19 15 6 35 35 H 1.08997 * 110.02964 * 0.02562 * 19 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1628 1.1359 0.0000 4 17 1.2949 2.6392 -0.0007 5 6 2.2605 -1.3052 0.0006 6 7 2.4004 -1.7877 1.3768 7 6 3.4918 -1.4270 2.1211 8 1 3.3798 -1.2083 3.1728 9 6 4.7420 -1.3425 1.5240 10 7 4.9748 -1.9729 0.3922 11 14 6.0942 -0.3342 2.3267 12 1 6.3787 -0.8759 3.6798 13 1 7.3236 -0.4054 1.4969 14 1 5.6553 1.0797 2.4418 15 6 1.3758 -2.6609 1.9546 16 6 0.7117 -1.9688 3.1627 17 6 0.4664 -3.1197 4.1712 18 6 1.7295 -3.9997 4.0005 19 6 2.0224 -3.9518 2.4867 20 1 -0.3633 0.0000 1.0276 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5138 23 1 3.2429 1.1358 -0.0004 24 1 3.2488 -1.1542 -0.4338 25 1 1.7131 -2.0409 -0.5886 26 1 5.8238 -1.8564 -0.0621 27 1 0.6242 -2.9022 1.2029 28 1 1.3816 -1.2231 3.5909 29 1 -0.2325 -1.5107 2.8684 30 1 -0.4319 -3.6782 3.9078 31 1 0.3969 -2.7369 5.1893 32 1 1.5275 -5.0227 4.3178 33 1 2.5652 -3.5845 4.5640 34 1 1.5839 -4.8196 1.9940 35 1 3.0986 -3.9284 2.3154 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232003406.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:12 Heat of formation + Delta-G solvation = -2.016233 kcal Electronic energy + Delta-G solvation = -16386.767741 eV Core-core repulsion = 13831.304982 eV Total energy + Delta-G solvation = -2555.462759 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.109 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.49091 -37.77918 -36.56839 -34.68493 -32.61648 -29.30339 -28.65428 -27.76811 -27.51569 -24.06707 -21.36913 -20.70450 -19.63992 -18.08930 -17.04193 -16.52113 -16.26681 -15.92323 -15.35752 -15.07661 -14.49051 -14.08819 -14.02754 -13.41589 -13.07723 -12.86346 -12.79275 -12.68946 -12.56250 -12.20961 -12.00812 -11.91034 -11.75005 -11.71003 -11.67696 -11.35967 -11.21931 -11.12680 -10.45215 -9.54964 -8.51846 -7.75686 -5.41944 1.20973 1.44366 1.47881 1.52412 1.57876 2.52766 3.28015 3.73807 4.01914 4.06472 4.13421 4.34204 4.40518 4.70665 4.74632 4.80362 4.86353 4.94545 4.97742 4.99100 5.02760 5.10710 5.25558 5.26530 5.37011 5.51392 5.62250 5.63605 5.65418 5.70071 5.84802 5.94946 6.53305 7.21721 7.90809 8.43051 9.15287 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.015638 B = 0.011384 C = 0.007771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.112051 B = 2458.985443 C = 3602.146790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.106 4.106 3 C -0.126 4.126 4 Cl -0.110 7.110 5 C 0.180 3.820 6 N -0.578 5.578 7 C -0.235 4.235 8 H 0.050 0.950 9 C -0.027 4.027 10 N -0.910 5.910 11 Si 0.933 3.067 12 H -0.279 1.279 13 H -0.295 1.295 14 H -0.282 1.282 15 C 0.165 3.835 16 C -0.128 4.128 17 C -0.112 4.112 18 C -0.114 4.114 19 C -0.129 4.129 20 H 0.068 0.932 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.119 0.881 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.249 0.751 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.056 0.944 35 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.637 0.863 1.636 9.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.110 4.110 3 C -0.172 4.172 4 Cl -0.082 7.082 5 C 0.053 3.947 6 N -0.297 5.297 7 C -0.366 4.366 8 H 0.067 0.933 9 C -0.225 4.225 10 N -0.554 5.554 11 Si 0.762 3.238 12 H -0.205 1.205 13 H -0.221 1.221 14 H -0.208 1.208 15 C 0.058 3.942 16 C -0.168 4.168 17 C -0.150 4.150 18 C -0.152 4.152 19 C -0.168 4.168 20 H 0.087 0.913 21 H 0.090 0.910 22 H 0.090 0.910 23 H 0.137 0.863 24 H 0.088 0.912 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.527 0.882 1.567 9.696 hybrid contribution 1.338 0.731 0.224 1.541 sum -8.189 1.613 1.791 8.537 Atomic orbital electron populations 1.20851 0.90563 1.02858 1.02301 1.23065 0.97568 0.95843 0.94560 1.23973 0.96837 0.85050 1.11295 1.98261 1.77519 1.35260 1.97120 1.19865 0.98795 0.88981 0.87020 1.44008 1.21407 1.52904 1.11368 1.18877 0.85363 1.38663 0.93664 0.93291 1.25584 0.98191 1.00004 0.98683 1.70141 1.24146 1.41309 1.19853 0.85890 0.79746 0.79879 0.78320 1.20532 1.22085 1.20849 1.21287 0.89745 0.89152 0.93975 1.22734 0.99249 0.97937 0.96863 1.22407 0.97593 0.96248 0.98717 1.22218 0.97621 0.99755 0.95588 1.22457 1.00514 0.97780 0.96068 0.91293 0.91021 0.91032 0.86321 0.91218 0.93818 0.94136 0.92239 0.93705 0.91902 0.90228 0.91465 0.90938 0.93839 0.92557 0.94036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.32 9.59 71.24 0.68 -2.64 16 2 C -0.11 -4.03 5.64 -16.64 -0.09 -4.13 16 3 C -0.13 -4.87 10.40 67.62 0.70 -4.16 16 4 Cl -0.11 -3.60 27.23 -2.72 -0.07 -3.68 16 5 C 0.18 7.90 5.43 85.63 0.47 8.37 16 6 N -0.58 -26.42 2.36 -678.31 -1.60 -28.02 16 7 C -0.23 -12.06 7.75 84.03 0.65 -11.41 16 8 H 0.05 2.60 6.95 -2.91 -0.02 2.58 16 9 C -0.03 -1.44 4.97 84.86 0.42 -1.02 16 10 N -0.91 -50.73 11.47 21.65 0.25 -50.48 16 11 Si 0.93 43.77 29.60 68.60 2.03 45.80 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 14 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 15 C 0.16 6.34 3.42 45.72 0.16 6.50 16 16 C -0.13 -4.37 6.43 31.69 0.20 -4.17 16 17 C -0.11 -3.14 6.91 31.91 0.22 -2.92 16 18 C -0.11 -3.64 6.83 31.67 0.22 -3.43 16 19 C -0.13 -4.92 6.25 31.32 0.20 -4.73 16 20 H 0.07 2.09 8.08 -2.39 -0.02 2.07 16 21 H 0.07 2.01 6.74 -2.38 -0.02 2.00 16 22 H 0.07 1.96 8.08 -2.39 -0.02 1.94 16 23 H 0.12 5.13 8.00 -2.91 -0.02 5.11 16 24 H 0.07 3.56 5.39 -2.39 -0.01 3.55 16 25 H 0.04 1.82 7.86 -2.39 -0.02 1.80 16 26 H 0.25 13.66 8.32 -92.71 -0.77 12.89 16 27 H 0.06 2.14 7.81 -2.39 -0.02 2.12 16 28 H 0.04 1.78 6.66 -2.38 -0.02 1.76 16 29 H 0.06 1.92 8.08 -2.39 -0.02 1.90 16 30 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.04 1.96 7.16 -2.39 -0.02 1.94 16 Total: -1.00 -54.91 295.43 5.48 -49.43 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 1.05 Total: 10.67 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 3.82 Total: -23.72 kcal Atomic # 7 Polarization: -77.15 SS G_CDS: -1.36 Total: -78.50 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 17 Polarization: -3.60 SS G_CDS: -0.07 Total: -3.68 kcal Total: -54.91 5.48 -49.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232003406.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.418 kcal (2) G-P(sol) polarization free energy of solvation -54.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds