Wall clock time and date at job start Mon Mar 30 2020 05:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86797 * 120.00166 * 2 1 4 4 H 1.48499 * 109.47139 * 270.00206 * 3 2 1 5 5 H 1.48491 * 109.47266 * 149.99712 * 3 2 1 6 6 H 1.48508 * 109.46973 * 29.99842 * 3 2 1 7 7 C 1.39864 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00127 * 154.18517 * 7 2 1 9 9 C 1.41138 * 120.00159 * 334.19455 * 7 2 1 10 10 C 1.40880 * 120.15468 * 334.59661 * 9 7 2 11 11 C 1.36346 * 119.83705 * 179.73931 * 10 9 7 12 12 C 1.39564 * 120.15540 * 0.56363 * 11 10 9 13 13 N 1.38861 * 119.83903 * 179.70818 * 12 11 10 14 14 C 1.46499 * 120.00046 * 359.97438 * 13 12 11 15 15 H 1.09001 * 109.35354 * 324.71755 * 14 13 12 16 16 C 1.50070 * 109.35727 * 84.30659 * 14 13 12 17 17 C 1.29445 * 124.07277 * 137.34131 * 16 14 13 18 18 C 1.50067 * 124.07906 * 359.52697 * 17 16 14 19 19 C 1.53026 * 110.14539 * 17.13099 * 18 17 16 20 20 C 1.53028 * 109.35816 * 204.99447 * 14 13 12 21 21 C 1.39563 * 120.32244 * 359.69158 * 12 11 10 22 22 C 1.36346 * 120.15881 * 0.02562 * 21 12 11 23 23 H 0.97000 * 119.99923 * 174.23977 * 1 2 3 24 24 H 1.07996 * 120.08554 * 0.02562 * 10 9 7 25 25 H 1.08000 * 119.92124 * 180.27732 * 11 10 9 26 26 H 0.97004 * 120.00088 * 179.97438 * 13 12 11 27 27 H 1.07997 * 117.96203 * 317.31387 * 16 14 13 28 28 H 1.08001 * 117.96153 * 179.50011 * 17 16 14 29 29 H 1.08992 * 109.35801 * 256.92542 * 18 17 16 30 30 H 1.08998 * 109.24640 * 137.26631 * 18 17 16 31 31 H 1.09002 * 109.64555 * 190.88112 * 19 18 17 32 32 H 1.09003 * 109.63979 * 70.25043 * 19 18 17 33 33 H 1.09001 * 109.64375 * 310.04205 * 20 14 13 34 34 H 1.09003 * 109.63812 * 70.66981 * 20 14 13 35 35 H 1.07996 * 119.92468 * 180.02562 * 21 12 11 36 36 H 1.07997 * 120.08251 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0464 -1.4001 5 1 3.5405 1.4401 0.7000 6 1 1.4405 2.6527 0.7000 7 6 2.0084 -1.2113 0.0005 8 1 3.0075 -1.2582 -0.4067 9 6 1.4082 -2.3724 0.5331 10 6 0.3989 -2.2629 1.5099 11 6 -0.1802 -3.3887 2.0161 12 6 0.2330 -4.6476 1.5775 13 7 -0.3570 -5.7900 2.1019 14 6 -1.4101 -5.6721 3.1135 15 1 -1.1958 -4.8215 3.7606 16 6 -2.7307 -5.4564 2.4340 17 6 -3.8303 -6.0433 2.7831 18 6 -3.9364 -7.0291 3.9097 19 6 -2.7145 -6.9177 4.8242 20 6 -1.4521 -6.9506 3.9534 21 6 1.2360 -4.7639 0.6141 22 6 1.8200 -3.6465 0.0948 23 1 -0.4850 -0.8358 -0.0843 24 1 0.0813 -1.2896 1.8535 25 1 -0.9572 -3.3063 2.7616 26 1 -0.0719 -6.6661 1.7984 27 1 -2.7658 -4.7684 1.6022 28 1 -4.7275 -5.8086 2.2295 29 1 -3.9920 -8.0385 3.5024 30 1 -4.8385 -6.8213 4.4851 31 1 -2.7007 -7.7558 5.5210 32 1 -2.7544 -5.9787 5.3763 33 1 -1.4827 -7.8198 3.2964 34 1 -0.5688 -6.9997 4.5902 35 1 1.5505 -5.7412 0.2790 36 1 2.5958 -3.7379 -0.6509 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236236119.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:09 Heat of formation + Delta-G solvation = 21.208683 kcal Electronic energy + Delta-G solvation = -16761.181754 eV Core-core repulsion = 14209.158952 eV Total energy + Delta-G solvation = -2552.022802 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.01517 -37.56331 -34.76803 -32.86419 -30.99113 -29.67134 -29.53404 -27.45778 -24.30291 -22.85369 -22.27158 -20.85595 -20.12986 -17.83844 -17.75916 -16.36803 -15.97938 -15.09726 -14.37261 -14.01925 -13.72283 -13.58516 -13.31212 -12.77525 -12.63795 -12.56034 -12.14814 -12.01009 -11.68851 -11.43178 -11.12732 -11.03569 -10.82187 -10.51238 -10.33114 -10.23667 -9.59447 -9.41556 -9.08469 -8.90262 -8.55603 -7.69273 -7.02521 -6.53216 -4.07820 2.42293 2.91904 2.95850 3.24353 3.39102 3.44868 4.15578 4.29375 4.70088 4.78288 4.80491 5.01294 5.27696 5.43808 5.52780 5.56752 5.65745 5.67132 5.82158 5.85816 5.98196 6.15918 6.18999 6.26845 6.39648 6.74458 6.79647 6.85302 7.06696 7.10851 7.41692 7.49301 7.65259 7.91562 7.97443 8.23501 8.37933 8.49083 8.69474 8.97098 9.10626 10.26110 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.040651 B = 0.004963 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.623404 B = 5639.868009 C = 6010.511214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.039 3.961 3 Si 1.064 2.936 4 H -0.280 1.280 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.535 4.535 8 H 0.069 0.931 9 C 0.067 3.933 10 C -0.181 4.181 11 C -0.145 4.145 12 C 0.081 3.919 13 N -0.753 5.753 14 C 0.190 3.810 15 H 0.080 0.920 16 C -0.150 4.150 17 C -0.171 4.171 18 C -0.088 4.088 19 C -0.117 4.117 20 C -0.123 4.123 21 C -0.146 4.146 22 C -0.191 4.191 23 H 0.296 0.704 24 H 0.105 0.895 25 H 0.091 0.909 26 H 0.384 0.616 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.124 -10.142 6.779 13.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.180 4.180 3 Si 0.888 3.112 4 H -0.206 1.206 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.564 4.564 8 H 0.087 0.913 9 C 0.063 3.937 10 C -0.201 4.201 11 C -0.167 4.167 12 C -0.016 4.016 13 N -0.387 5.387 14 C 0.084 3.916 15 H 0.097 0.903 16 C -0.170 4.170 17 C -0.190 4.190 18 C -0.125 4.125 19 C -0.155 4.155 20 C -0.162 4.162 21 C -0.168 4.168 22 C -0.211 4.211 23 H 0.109 0.891 24 H 0.123 0.877 25 H 0.109 0.891 26 H 0.217 0.783 27 H 0.123 0.877 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.465 -8.369 6.942 12.169 hybrid contribution 0.161 -1.972 -0.391 2.016 sum -5.304 -10.341 6.551 13.341 Atomic orbital electron populations 1.70459 1.08166 1.33881 1.31336 1.26837 0.95698 1.03957 0.91550 0.83686 0.75739 0.74105 0.77665 1.20562 1.20266 1.20065 1.20312 1.03225 0.94416 1.38474 0.91259 1.17567 0.92244 0.92508 0.91335 1.20767 1.02456 0.96732 1.00172 1.20041 1.02386 0.91606 1.02693 1.17278 0.98203 0.86146 0.99956 1.43889 1.42259 1.05527 1.47048 1.19427 0.85446 0.97484 0.89263 0.90282 1.22865 0.94961 0.99080 1.00086 1.21972 0.97973 0.99581 0.99465 1.20424 0.98200 0.98412 0.95424 1.21581 0.94246 1.02106 0.97572 1.21823 0.98120 0.97800 0.98417 1.19881 0.99522 0.97144 1.00214 1.20522 1.04647 0.92398 1.03524 0.89078 0.87681 0.89099 0.78302 0.87682 0.88407 0.91336 0.91453 0.91658 0.91546 0.91666 0.91352 0.89432 0.88970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.50 12.31 55.54 0.68 -21.82 16 2 C 0.04 1.04 4.92 -17.34 -0.09 0.95 16 3 Si 1.06 22.56 30.00 -169.99 -5.10 17.46 16 4 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 6 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.53 -14.80 8.96 -37.87 -0.34 -15.14 16 8 H 0.07 1.88 7.96 -52.49 -0.42 1.46 16 9 C 0.07 1.82 5.30 -106.79 -0.57 1.25 16 10 C -0.18 -4.75 7.90 -39.26 -0.31 -5.06 16 11 C -0.15 -3.39 9.04 -39.77 -0.36 -3.75 16 12 C 0.08 1.76 6.63 -83.69 -0.55 1.20 16 13 N -0.75 -13.15 5.19 -53.44 -0.28 -13.42 16 14 C 0.19 2.90 2.42 -69.37 -0.17 2.73 16 15 H 0.08 1.32 6.46 -51.93 -0.34 0.98 16 16 C -0.15 -2.28 9.10 -35.90 -0.33 -2.61 16 17 C -0.17 -2.18 9.80 -35.90 -0.35 -2.54 16 18 C -0.09 -0.90 6.12 -28.18 -0.17 -1.07 16 19 C -0.12 -1.20 6.01 -26.52 -0.16 -1.36 16 20 C -0.12 -1.47 5.48 -26.52 -0.15 -1.62 16 21 C -0.15 -3.29 9.82 -39.77 -0.39 -3.68 16 22 C -0.19 -4.79 9.74 -39.26 -0.38 -5.17 16 23 H 0.30 8.41 6.71 -40.82 -0.27 8.13 16 24 H 0.11 2.86 6.49 -52.49 -0.34 2.52 16 25 H 0.09 1.95 6.11 -52.49 -0.32 1.63 16 26 H 0.38 6.03 8.58 -40.82 -0.35 5.68 16 27 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 28 H 0.10 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 33 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.09 2.21 8.06 -52.49 -0.42 1.78 16 LS Contribution 293.42 15.07 4.42 4.42 Total: -1.00 -28.29 293.42 -9.64 -37.93 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -5.06 Total: 11.27 kcal Atomic # 6 Polarization: -31.53 SS G_CDS: -4.31 Total: -35.85 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.41 Total: -35.24 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.10 Total: 17.46 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.29 -9.64 -37.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236236119.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.138 kcal (2) G-P(sol) polarization free energy of solvation -28.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds