Wall clock time and date at job start Mon Mar 30 2020 05:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86797 * 120.00166 * 2 1 4 4 H 1.48499 * 109.47139 * 270.00206 * 3 2 1 5 5 H 1.48491 * 109.47266 * 149.99712 * 3 2 1 6 6 H 1.48508 * 109.46973 * 29.99842 * 3 2 1 7 7 C 1.39864 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00127 * 154.18517 * 7 2 1 9 9 C 1.41138 * 120.00159 * 334.19455 * 7 2 1 10 10 C 1.40880 * 120.15468 * 334.59661 * 9 7 2 11 11 C 1.36346 * 119.83705 * 179.73931 * 10 9 7 12 12 C 1.39564 * 120.15540 * 0.56363 * 11 10 9 13 13 N 1.38861 * 119.83903 * 179.70818 * 12 11 10 14 14 C 1.46499 * 120.00046 * 359.97438 * 13 12 11 15 15 H 1.09001 * 109.35354 * 324.71755 * 14 13 12 16 16 C 1.50070 * 109.35727 * 84.30659 * 14 13 12 17 17 C 1.29445 * 124.07277 * 137.34131 * 16 14 13 18 18 C 1.50067 * 124.07906 * 359.52697 * 17 16 14 19 19 C 1.53026 * 110.14539 * 17.13099 * 18 17 16 20 20 C 1.53028 * 109.35816 * 204.99447 * 14 13 12 21 21 C 1.39563 * 120.32244 * 359.69158 * 12 11 10 22 22 C 1.36346 * 120.15881 * 0.02562 * 21 12 11 23 23 H 0.97000 * 119.99923 * 174.23977 * 1 2 3 24 24 H 1.07996 * 120.08554 * 0.02562 * 10 9 7 25 25 H 1.08000 * 119.92124 * 180.27732 * 11 10 9 26 26 H 0.97004 * 120.00088 * 179.97438 * 13 12 11 27 27 H 1.07997 * 117.96203 * 317.31387 * 16 14 13 28 28 H 1.08001 * 117.96153 * 179.50011 * 17 16 14 29 29 H 1.08992 * 109.35801 * 256.92542 * 18 17 16 30 30 H 1.08998 * 109.24640 * 137.26631 * 18 17 16 31 31 H 1.09002 * 109.64555 * 190.88112 * 19 18 17 32 32 H 1.09003 * 109.63979 * 70.25043 * 19 18 17 33 33 H 1.09001 * 109.64375 * 310.04205 * 20 14 13 34 34 H 1.09003 * 109.63812 * 70.66981 * 20 14 13 35 35 H 1.07996 * 119.92468 * 180.02562 * 21 12 11 36 36 H 1.07997 * 120.08251 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0464 -1.4001 5 1 3.5405 1.4401 0.7000 6 1 1.4405 2.6527 0.7000 7 6 2.0084 -1.2113 0.0005 8 1 3.0075 -1.2582 -0.4067 9 6 1.4082 -2.3724 0.5331 10 6 0.3989 -2.2629 1.5099 11 6 -0.1802 -3.3887 2.0161 12 6 0.2330 -4.6476 1.5775 13 7 -0.3570 -5.7900 2.1019 14 6 -1.4101 -5.6721 3.1135 15 1 -1.1958 -4.8215 3.7606 16 6 -2.7307 -5.4564 2.4340 17 6 -3.8303 -6.0433 2.7831 18 6 -3.9364 -7.0291 3.9097 19 6 -2.7145 -6.9177 4.8242 20 6 -1.4521 -6.9506 3.9534 21 6 1.2360 -4.7639 0.6141 22 6 1.8200 -3.6465 0.0948 23 1 -0.4850 -0.8358 -0.0843 24 1 0.0813 -1.2896 1.8535 25 1 -0.9572 -3.3063 2.7616 26 1 -0.0719 -6.6661 1.7984 27 1 -2.7658 -4.7684 1.6022 28 1 -4.7275 -5.8086 2.2295 29 1 -3.9920 -8.0385 3.5024 30 1 -4.8385 -6.8213 4.4851 31 1 -2.7007 -7.7558 5.5210 32 1 -2.7544 -5.9787 5.3763 33 1 -1.4827 -7.8198 3.2964 34 1 -0.5688 -6.9997 4.5902 35 1 1.5505 -5.7412 0.2790 36 1 2.5958 -3.7379 -0.6509 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236236119.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:08 Heat of formation + Delta-G solvation = 6.604967 kcal Electronic energy + Delta-G solvation = -16761.815019 eV Core-core repulsion = 14209.158952 eV Total energy + Delta-G solvation = -2552.656066 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.42428 -39.13657 -36.45048 -34.57516 -32.01240 -31.51926 -31.10372 -29.06371 -26.13720 -24.21816 -23.35132 -22.57736 -21.88456 -19.77160 -18.89046 -17.81697 -17.39389 -16.56864 -16.09980 -15.60979 -15.18785 -14.82826 -14.77160 -14.35913 -14.01579 -13.89162 -13.67127 -13.46186 -13.15277 -13.08272 -12.82119 -12.63391 -11.97545 -11.96237 -11.59954 -11.48931 -11.33431 -11.28962 -10.86333 -10.39101 -9.99899 -9.64703 -9.08393 -8.33448 -6.11848 0.94764 1.06381 1.31150 1.51011 1.67537 1.81068 2.39048 2.76655 2.89351 3.63336 3.78631 3.85559 4.06407 4.25778 4.28798 4.34710 4.44469 4.53489 4.63651 4.74764 4.80661 4.92169 4.99427 5.03755 5.12307 5.17808 5.33977 5.39163 5.47737 5.56014 5.69641 5.72762 5.88262 5.91360 5.99407 6.29118 6.38204 6.69020 6.95094 7.08436 7.23785 8.17605 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.040651 B = 0.004963 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.623404 B = 5639.868009 C = 6010.511214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.001 3.999 3 Si 1.117 2.883 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.271 1.271 7 C -0.573 4.573 8 H 0.063 0.937 9 C 0.029 3.971 10 C -0.193 4.193 11 C -0.157 4.157 12 C 0.108 3.892 13 N -0.742 5.742 14 C 0.188 3.812 15 H 0.060 0.940 16 C -0.184 4.184 17 C -0.144 4.144 18 C -0.089 4.089 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.153 4.153 22 C -0.198 4.198 23 H 0.278 0.722 24 H 0.084 0.916 25 H 0.104 0.896 26 H 0.397 0.603 27 H 0.071 0.929 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.122 0.878 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.789 -12.443 8.045 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.212 4.212 3 Si 0.934 3.066 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.196 1.196 7 C -0.603 4.603 8 H 0.081 0.919 9 C 0.026 3.974 10 C -0.213 4.213 11 C -0.179 4.179 12 C 0.009 3.991 13 N -0.376 5.376 14 C 0.083 3.917 15 H 0.078 0.922 16 C -0.204 4.204 17 C -0.163 4.163 18 C -0.125 4.125 19 C -0.153 4.153 20 C -0.154 4.154 21 C -0.175 4.175 22 C -0.218 4.218 23 H 0.090 0.910 24 H 0.102 0.898 25 H 0.122 0.878 26 H 0.232 0.768 27 H 0.089 0.911 28 H 0.123 0.877 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.140 0.860 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.150 -10.733 8.219 14.852 hybrid contribution 0.229 -1.538 -0.707 1.708 sum -5.921 -12.272 7.512 15.559 Atomic orbital electron populations 1.70583 1.08897 1.32588 1.34190 1.28281 0.95720 1.07238 0.90002 0.83032 0.74772 0.70021 0.78755 1.18624 1.19122 1.19593 1.20503 1.03368 0.95819 1.40623 0.91864 1.17868 0.93516 0.93560 0.92473 1.20689 1.03093 0.96777 1.00761 1.20165 1.02799 0.91672 1.03252 1.17413 0.96629 0.87007 0.98080 1.43986 1.42111 1.04718 1.46780 1.19575 0.84553 0.98951 0.88654 0.92202 1.22586 0.96053 1.00995 1.00805 1.22302 0.97077 0.97857 0.99053 1.20539 0.99152 0.98286 0.94560 1.21608 0.93043 1.03041 0.97580 1.21795 0.99515 0.95860 0.98265 1.20194 0.99308 0.97947 1.00042 1.20740 1.04819 0.92549 1.03654 0.91048 0.89791 0.87774 0.76769 0.91054 0.87670 0.89479 0.89416 0.88946 0.92112 0.90580 0.90825 0.85987 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.55 12.31 21.82 0.27 -48.29 16 2 C 0.00 0.03 4.92 85.22 0.42 0.45 16 3 Si 1.12 46.45 30.00 68.60 2.06 48.50 16 4 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 5 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 6 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 7 C -0.57 -33.17 8.96 23.38 0.21 -32.96 16 8 H 0.06 3.58 7.96 -2.91 -0.02 3.56 16 9 C 0.03 1.65 5.30 -21.27 -0.11 1.53 16 10 C -0.19 -10.60 7.90 22.48 0.18 -10.42 16 11 C -0.16 -7.48 9.04 22.15 0.20 -7.28 16 12 C 0.11 4.63 6.63 38.67 0.26 4.89 16 13 N -0.74 -24.59 5.19 -322.99 -1.68 -26.27 16 14 C 0.19 5.44 2.42 44.06 0.11 5.55 16 15 H 0.06 1.96 6.46 -2.39 -0.02 1.95 16 16 C -0.18 -5.43 9.10 27.04 0.25 -5.18 16 17 C -0.14 -3.32 9.80 27.04 0.27 -3.05 16 18 C -0.09 -1.44 6.12 29.66 0.18 -1.26 16 19 C -0.11 -1.89 6.01 30.73 0.18 -1.70 16 20 C -0.12 -2.38 5.48 30.73 0.17 -2.21 16 21 C -0.15 -6.75 9.82 22.15 0.22 -6.53 16 22 C -0.20 -10.07 9.74 22.48 0.22 -9.85 16 23 H 0.28 16.81 6.71 -92.71 -0.62 16.19 16 24 H 0.08 4.88 6.49 -2.91 -0.02 4.86 16 25 H 0.10 4.61 6.11 -2.91 -0.02 4.59 16 26 H 0.40 11.31 8.58 -92.71 -0.80 10.51 16 27 H 0.07 2.56 8.06 -2.91 -0.02 2.54 16 28 H 0.11 2.27 8.06 -2.91 -0.02 2.24 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 1.09 8.12 -2.39 -0.02 1.07 16 33 H 0.08 1.42 8.11 -2.39 -0.02 1.40 16 34 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 36 H 0.10 4.74 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -64.34 293.42 3.81 -60.54 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: 0.42 Total: 33.55 kcal Atomic # 6 Polarization: -70.78 SS G_CDS: 2.74 Total: -68.04 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -1.41 Total: -74.55 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.06 Total: 48.50 kcal Total: -64.34 3.81 -60.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236236119.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.142 kcal (2) G-P(sol) polarization free energy of solvation -64.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds