Wall clock time and date at job start Mon Mar 30 2020 05:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86803 * 119.99589 * 2 1 4 4 H 1.48501 * 109.47245 * 274.65047 * 3 2 1 5 5 H 1.48503 * 109.47218 * 34.65146 * 3 2 1 6 6 H 1.48504 * 109.46956 * 154.64964 * 3 2 1 7 7 C 1.39862 * 120.00443 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00547 * 162.29000 * 7 2 1 9 9 C 1.41140 * 119.99611 * 342.28366 * 7 2 1 10 10 C 1.40883 * 120.16066 * 334.91488 * 9 7 2 11 11 C 1.36336 * 119.83895 * 179.78357 * 10 9 7 12 12 C 1.39563 * 120.15965 * 0.49441 * 11 10 9 13 13 N 1.38861 * 119.84053 * 179.76065 * 12 11 10 14 14 C 1.46495 * 120.00167 * 359.97406 * 13 12 11 15 15 H 1.09005 * 109.35641 * 35.27867 * 14 13 12 16 16 C 1.50065 * 109.36006 * 275.69270 * 14 13 12 17 17 C 1.29441 * 124.07536 * 222.66307 * 16 14 13 18 18 C 1.50068 * 124.07839 * 0.46746 * 17 16 14 19 19 C 1.53028 * 110.14161 * 342.86807 * 18 17 16 20 20 C 1.53026 * 109.35826 * 155.00194 * 14 13 12 21 21 C 1.39570 * 120.31819 * 359.73456 * 12 11 10 22 22 C 1.36342 * 120.15762 * 0.02711 * 21 12 11 23 23 H 0.96998 * 120.00629 * 0.02562 * 1 2 3 24 24 H 1.08004 * 120.07516 * 0.02562 * 10 9 7 25 25 H 1.08001 * 119.92175 * 180.20415 * 11 10 9 26 26 H 0.97006 * 119.99633 * 179.97438 * 13 12 11 27 27 H 1.08004 * 117.96592 * 42.63643 * 16 14 13 28 28 H 1.08006 * 117.96511 * 180.46755 * 17 16 14 29 29 H 1.08996 * 109.35741 * 222.66566 * 18 17 16 30 30 H 1.08990 * 109.24831 * 103.00436 * 18 17 16 31 31 H 1.08996 * 109.64520 * 289.74887 * 19 18 17 32 32 H 1.09000 * 109.63916 * 169.11943 * 19 18 17 33 33 H 1.09001 * 109.63755 * 289.32618 * 20 14 13 34 34 H 1.08996 * 109.63826 * 49.74612 * 20 14 13 35 35 H 1.07991 * 119.92139 * 180.02562 * 21 12 11 36 36 H 1.07993 * 120.07931 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.3921 2.1033 -1.3955 5 1 1.4929 2.6224 0.7961 6 1 3.5862 1.4139 0.5995 7 6 2.0084 -1.2112 0.0005 8 1 3.0500 -1.2335 -0.2840 9 6 1.3529 -2.4044 0.3730 10 6 0.2275 -2.3592 1.2193 11 6 -0.4033 -3.5154 1.5715 12 6 0.0694 -4.7425 1.1040 13 7 -0.5752 -5.9164 1.4708 14 6 -1.7482 -5.8650 2.3469 15 1 -2.3287 -4.9704 2.1213 16 6 -1.2986 -5.8152 3.7778 17 6 -1.8439 -6.4970 4.7334 18 6 -2.9954 -7.4401 4.5425 19 6 -3.6855 -7.1651 3.2046 20 6 -2.6135 -7.1045 2.1092 21 6 1.1867 -4.7953 0.2691 22 6 1.8246 -3.6467 -0.0951 23 1 -0.4851 0.8400 -0.0004 24 1 -0.1369 -1.4106 1.5851 25 1 -1.2681 -3.4820 2.2175 26 1 -0.2487 -6.7706 1.1469 27 1 -0.4681 -5.1707 4.0255 28 1 -1.4453 -6.3798 5.7304 29 1 -3.7115 -7.3047 5.3530 30 1 -2.6259 -8.4654 4.5544 31 1 -4.2136 -6.2129 3.2536 32 1 -4.3898 -7.9672 2.9840 33 1 -3.0916 -7.0356 1.1321 34 1 -1.9918 -7.9988 2.1506 35 1 1.5468 -5.7483 -0.0892 36 1 2.6892 -3.6891 -0.7408 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236236245.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:11 Heat of formation + Delta-G solvation = 27.172007 kcal Electronic energy + Delta-G solvation = -16711.309228 eV Core-core repulsion = 14159.545016 eV Total energy + Delta-G solvation = -2551.764212 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.93961 -37.38111 -34.53807 -32.80300 -30.95193 -29.72599 -29.39729 -27.64318 -24.37561 -22.74678 -22.23854 -20.82551 -19.91093 -17.76332 -17.18518 -16.34002 -15.89213 -15.02614 -14.85782 -13.94214 -13.66235 -13.53136 -12.99447 -12.68837 -12.64255 -12.39925 -12.21036 -11.80966 -11.60859 -11.46230 -11.10776 -10.96771 -10.81640 -10.55875 -10.39404 -10.16376 -9.68298 -9.28419 -9.18644 -8.86255 -8.52842 -7.46601 -6.61714 -6.36114 -4.01022 2.45925 2.93410 3.12591 3.16329 3.21408 3.37454 4.07366 4.36247 4.76062 4.82865 4.84832 5.06058 5.32235 5.48379 5.57213 5.60800 5.70646 5.85089 5.86392 5.91157 6.03365 6.27354 6.30274 6.37896 6.44942 6.81626 6.94858 6.96385 7.12661 7.22756 7.38272 7.59056 7.71923 7.87397 8.17890 8.32175 8.52572 8.73716 8.83336 9.08558 9.17954 10.39888 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.041628 B = 0.004859 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.457953 B = 5760.820599 C = 6056.622005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.075 3.925 3 Si 0.901 3.099 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.468 4.468 8 H 0.072 0.928 9 C 0.074 3.926 10 C -0.124 4.124 11 C -0.164 4.164 12 C 0.093 3.907 13 N -0.753 5.753 14 C 0.190 3.810 15 H 0.081 0.919 16 C -0.148 4.148 17 C -0.173 4.173 18 C -0.087 4.087 19 C -0.117 4.117 20 C -0.124 4.124 21 C -0.159 4.159 22 C -0.187 4.187 23 H 0.276 0.724 24 H 0.117 0.883 25 H 0.089 0.911 26 H 0.384 0.616 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.758 -10.149 6.072 13.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.499 4.499 8 H 0.090 0.910 9 C 0.071 3.929 10 C -0.144 4.144 11 C -0.186 4.186 12 C -0.004 4.004 13 N -0.387 5.387 14 C 0.083 3.917 15 H 0.099 0.901 16 C -0.168 4.168 17 C -0.192 4.192 18 C -0.124 4.124 19 C -0.155 4.155 20 C -0.162 4.162 21 C -0.181 4.181 22 C -0.207 4.207 23 H 0.086 0.914 24 H 0.135 0.865 25 H 0.107 0.893 26 H 0.216 0.784 27 H 0.123 0.877 28 H 0.115 0.885 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.070 -9.869 6.143 13.114 hybrid contribution 0.572 0.567 -0.078 0.809 sum -5.498 -9.302 6.064 12.391 Atomic orbital electron populations 1.69854 1.07365 1.28562 1.37816 1.25783 0.94634 1.00844 0.92717 0.86426 0.80759 0.81393 0.78800 1.19865 1.20293 1.18678 1.19364 0.97810 0.91381 1.41341 0.90987 1.17493 0.92505 0.91977 0.90878 1.20929 0.98181 0.96425 0.98883 1.20125 1.01404 0.91923 1.05135 1.17367 0.95657 0.85699 1.01708 1.43923 1.32722 1.05865 1.56207 1.19430 0.87310 0.97997 0.86952 0.90141 1.22869 0.99569 0.98581 0.95746 1.21960 0.98988 0.99525 0.98693 1.20419 0.96023 0.98534 0.97455 1.21576 0.97469 1.01981 0.94471 1.21822 0.97336 0.98090 0.98943 1.19807 0.97897 0.97047 1.03398 1.20543 1.02658 0.92649 1.04869 0.91366 0.86480 0.89303 0.78359 0.87664 0.88477 0.91505 0.91396 0.91520 0.91707 0.91357 0.91706 0.89639 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.73 10.98 55.54 0.61 -21.12 16 2 C 0.08 1.96 5.13 -17.34 -0.09 1.88 16 3 Si 0.90 19.41 29.59 -169.99 -5.03 14.38 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.47 -12.88 9.03 -37.87 -0.34 -13.22 16 8 H 0.07 1.91 7.91 -52.49 -0.41 1.50 16 9 C 0.07 2.04 5.57 -106.79 -0.59 1.44 16 10 C -0.12 -3.30 8.63 -39.27 -0.34 -3.64 16 11 C -0.16 -3.89 9.04 -39.77 -0.36 -4.24 16 12 C 0.09 2.04 6.63 -83.69 -0.55 1.48 16 13 N -0.75 -13.33 5.19 -53.44 -0.28 -13.61 16 14 C 0.19 2.93 2.42 -69.38 -0.17 2.76 16 15 H 0.08 1.38 6.46 -51.93 -0.34 1.04 16 16 C -0.15 -2.22 9.11 -35.90 -0.33 -2.55 16 17 C -0.17 -2.18 9.80 -35.90 -0.35 -2.54 16 18 C -0.09 -0.90 6.12 -28.17 -0.17 -1.07 16 19 C -0.12 -1.22 6.01 -26.52 -0.16 -1.38 16 20 C -0.12 -1.51 5.48 -26.52 -0.15 -1.65 16 21 C -0.16 -3.63 9.82 -39.77 -0.39 -4.02 16 22 C -0.19 -4.70 9.74 -39.26 -0.38 -5.08 16 23 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 24 H 0.12 3.23 6.19 -52.48 -0.32 2.90 16 25 H 0.09 1.94 6.11 -52.49 -0.32 1.62 16 26 H 0.38 6.11 8.58 -40.82 -0.35 5.76 16 27 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 28 H 0.10 1.14 8.06 -52.48 -0.42 0.71 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 35 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 36 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 294.18 15.07 4.43 4.43 Total: -1.00 -28.12 294.18 -9.75 -37.86 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -5.11 Total: 9.88 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: -4.38 Total: -31.84 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.33 Total: -34.72 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.12 -9.75 -37.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236236245.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.035 kcal (2) G-P(sol) polarization free energy of solvation -28.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds