Wall clock time and date at job start Mon Mar 30 2020 05:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86803 * 119.99589 * 2 1 4 4 H 1.48501 * 109.47245 * 274.65047 * 3 2 1 5 5 H 1.48503 * 109.47218 * 34.65146 * 3 2 1 6 6 H 1.48504 * 109.46956 * 154.64964 * 3 2 1 7 7 C 1.39862 * 120.00443 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00547 * 162.29000 * 7 2 1 9 9 C 1.41140 * 119.99611 * 342.28366 * 7 2 1 10 10 C 1.40883 * 120.16066 * 334.91488 * 9 7 2 11 11 C 1.36336 * 119.83895 * 179.78357 * 10 9 7 12 12 C 1.39563 * 120.15965 * 0.49441 * 11 10 9 13 13 N 1.38861 * 119.84053 * 179.76065 * 12 11 10 14 14 C 1.46495 * 120.00167 * 359.97406 * 13 12 11 15 15 H 1.09005 * 109.35641 * 35.27867 * 14 13 12 16 16 C 1.50065 * 109.36006 * 275.69270 * 14 13 12 17 17 C 1.29441 * 124.07536 * 222.66307 * 16 14 13 18 18 C 1.50068 * 124.07839 * 0.46746 * 17 16 14 19 19 C 1.53028 * 110.14161 * 342.86807 * 18 17 16 20 20 C 1.53026 * 109.35826 * 155.00194 * 14 13 12 21 21 C 1.39570 * 120.31819 * 359.73456 * 12 11 10 22 22 C 1.36342 * 120.15762 * 0.02711 * 21 12 11 23 23 H 0.96998 * 120.00629 * 0.02562 * 1 2 3 24 24 H 1.08004 * 120.07516 * 0.02562 * 10 9 7 25 25 H 1.08001 * 119.92175 * 180.20415 * 11 10 9 26 26 H 0.97006 * 119.99633 * 179.97438 * 13 12 11 27 27 H 1.08004 * 117.96592 * 42.63643 * 16 14 13 28 28 H 1.08006 * 117.96511 * 180.46755 * 17 16 14 29 29 H 1.08996 * 109.35741 * 222.66566 * 18 17 16 30 30 H 1.08990 * 109.24831 * 103.00436 * 18 17 16 31 31 H 1.08996 * 109.64520 * 289.74887 * 19 18 17 32 32 H 1.09000 * 109.63916 * 169.11943 * 19 18 17 33 33 H 1.09001 * 109.63755 * 289.32618 * 20 14 13 34 34 H 1.08996 * 109.63826 * 49.74612 * 20 14 13 35 35 H 1.07991 * 119.92139 * 180.02562 * 21 12 11 36 36 H 1.07993 * 120.07931 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.3921 2.1033 -1.3955 5 1 1.4929 2.6224 0.7961 6 1 3.5862 1.4139 0.5995 7 6 2.0084 -1.2112 0.0005 8 1 3.0500 -1.2335 -0.2840 9 6 1.3529 -2.4044 0.3730 10 6 0.2275 -2.3592 1.2193 11 6 -0.4033 -3.5154 1.5715 12 6 0.0694 -4.7425 1.1040 13 7 -0.5752 -5.9164 1.4708 14 6 -1.7482 -5.8650 2.3469 15 1 -2.3287 -4.9704 2.1213 16 6 -1.2986 -5.8152 3.7778 17 6 -1.8439 -6.4970 4.7334 18 6 -2.9954 -7.4401 4.5425 19 6 -3.6855 -7.1651 3.2046 20 6 -2.6135 -7.1045 2.1092 21 6 1.1867 -4.7953 0.2691 22 6 1.8246 -3.6467 -0.0951 23 1 -0.4851 0.8400 -0.0004 24 1 -0.1369 -1.4106 1.5851 25 1 -1.2681 -3.4820 2.2175 26 1 -0.2487 -6.7706 1.1469 27 1 -0.4681 -5.1707 4.0255 28 1 -1.4453 -6.3798 5.7304 29 1 -3.7115 -7.3047 5.3530 30 1 -2.6259 -8.4654 4.5544 31 1 -4.2136 -6.2129 3.2536 32 1 -4.3898 -7.9672 2.9840 33 1 -3.0916 -7.0356 1.1321 34 1 -1.9918 -7.9988 2.1506 35 1 1.5468 -5.7483 -0.0892 36 1 2.6892 -3.6891 -0.7408 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236236245.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:11 Heat of formation + Delta-G solvation = 12.797418 kcal Electronic energy + Delta-G solvation = -16711.932557 eV Core-core repulsion = 14159.545016 eV Total energy + Delta-G solvation = -2552.387541 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.30596 -38.96891 -36.19610 -34.53986 -31.97013 -31.39671 -31.17939 -29.21021 -26.16862 -24.10370 -23.32586 -22.54276 -21.67180 -19.16066 -18.84697 -17.81351 -17.28055 -16.79517 -16.25146 -15.60390 -14.87206 -14.74200 -14.64623 -14.32135 -13.90062 -13.74529 -13.59757 -13.44033 -13.16831 -13.00161 -12.73601 -12.64232 -12.30983 -11.95315 -11.60796 -11.45908 -11.33316 -11.17807 -10.96777 -10.29800 -9.94697 -9.41217 -8.55273 -8.16717 -6.01402 1.10160 1.17208 1.36078 1.39504 1.52361 1.59043 2.27159 2.84091 2.96864 3.79393 3.85303 3.90665 4.11033 4.31181 4.39833 4.48739 4.50688 4.58926 4.67991 4.78713 4.95059 5.02650 5.05717 5.13435 5.16705 5.27471 5.36997 5.43357 5.45339 5.67223 5.75476 5.80714 5.94427 6.04618 6.18480 6.38700 6.67013 6.87195 7.07953 7.15240 7.32992 8.48343 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.041628 B = 0.004859 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.457953 B = 5760.820599 C = 6056.622005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.032 3.968 3 Si 0.976 3.024 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.507 4.507 8 H 0.068 0.932 9 C 0.035 3.965 10 C -0.144 4.144 11 C -0.173 4.173 12 C 0.113 3.887 13 N -0.743 5.743 14 C 0.188 3.812 15 H 0.058 0.942 16 C -0.182 4.182 17 C -0.145 4.145 18 C -0.088 4.088 19 C -0.115 4.115 20 C -0.117 4.117 21 C -0.166 4.166 22 C -0.195 4.195 23 H 0.282 0.718 24 H 0.097 0.903 25 H 0.100 0.900 26 H 0.396 0.604 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.648 -12.128 6.856 15.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.180 4.180 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.539 4.539 8 H 0.086 0.914 9 C 0.032 3.968 10 C -0.164 4.164 11 C -0.195 4.195 12 C 0.014 3.986 13 N -0.377 5.377 14 C 0.082 3.918 15 H 0.076 0.924 16 C -0.202 4.202 17 C -0.164 4.164 18 C -0.125 4.125 19 C -0.153 4.153 20 C -0.155 4.155 21 C -0.189 4.189 22 C -0.216 4.216 23 H 0.092 0.908 24 H 0.115 0.885 25 H 0.118 0.882 26 H 0.231 0.769 27 H 0.093 0.907 28 H 0.125 0.875 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.136 0.864 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.980 -11.900 6.939 15.443 hybrid contribution 0.757 0.963 -0.228 1.245 sum -6.224 -10.937 6.711 14.262 Atomic orbital electron populations 1.69921 1.08820 1.29783 1.38636 1.26618 0.95432 1.04127 0.91782 0.85293 0.79160 0.76615 0.79170 1.18908 1.19287 1.18503 1.19600 0.97939 0.92777 1.43543 0.91374 1.17816 0.93621 0.93106 0.92238 1.20849 0.99007 0.96606 0.99938 1.20232 1.01783 0.91976 1.05556 1.17470 0.94834 0.86651 0.99644 1.43997 1.32856 1.04915 1.55929 1.19556 0.86484 0.99001 0.86737 0.92445 1.22583 1.00621 1.00785 0.96164 1.22291 0.98295 0.97521 0.98317 1.20532 0.95328 0.98554 0.98099 1.21602 0.97203 1.02721 0.93752 1.21794 0.97355 0.96454 0.99915 1.20114 0.97793 0.97703 1.03252 1.20764 1.03038 0.92864 1.04890 0.90771 0.88506 0.88166 0.76890 0.90651 0.87464 0.89418 0.89534 0.92187 0.89075 0.91150 0.90543 0.86373 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.08 10.98 21.81 0.24 -46.84 16 2 C 0.03 1.73 5.13 85.22 0.44 2.17 16 3 Si 0.98 40.81 29.59 68.60 2.03 42.84 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 7 C -0.51 -29.16 9.03 23.38 0.21 -28.95 16 8 H 0.07 3.79 7.91 -2.91 -0.02 3.77 16 9 C 0.04 2.00 5.57 -21.27 -0.12 1.88 16 10 C -0.14 -8.02 8.63 22.47 0.19 -7.83 16 11 C -0.17 -8.46 9.04 22.15 0.20 -8.26 16 12 C 0.11 4.97 6.63 38.67 0.26 5.23 16 13 N -0.74 -25.32 5.19 -323.00 -1.68 -27.00 16 14 C 0.19 5.58 2.42 44.06 0.11 5.69 16 15 H 0.06 1.97 6.46 -2.38 -0.02 1.95 16 16 C -0.18 -5.31 9.11 27.04 0.25 -5.06 16 17 C -0.15 -3.31 9.80 27.04 0.27 -3.04 16 18 C -0.09 -1.45 6.12 29.66 0.18 -1.27 16 19 C -0.11 -1.97 6.01 30.73 0.18 -1.79 16 20 C -0.12 -2.52 5.48 30.73 0.17 -2.35 16 21 C -0.17 -7.49 9.82 22.15 0.22 -7.27 16 22 C -0.20 -10.03 9.74 22.48 0.22 -9.81 16 23 H 0.28 14.30 8.30 -92.71 -0.77 13.53 16 24 H 0.10 5.68 6.19 -2.91 -0.02 5.67 16 25 H 0.10 4.55 6.11 -2.91 -0.02 4.53 16 26 H 0.40 11.64 8.58 -92.70 -0.80 10.85 16 27 H 0.08 2.63 8.06 -2.91 -0.02 2.60 16 28 H 0.11 2.23 8.06 -2.91 -0.02 2.20 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.13 8.12 -2.39 -0.02 1.11 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 1.49 8.11 -2.39 -0.02 1.47 16 35 H 0.12 4.48 8.06 -2.92 -0.02 4.46 16 36 H 0.10 4.73 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -63.35 294.18 3.63 -59.72 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.27 Total: 31.93 kcal Atomic # 6 Polarization: -63.42 SS G_CDS: 2.77 Total: -60.65 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -1.44 Total: -73.84 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -63.35 3.63 -59.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236236245.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.515 kcal (2) G-P(sol) polarization free energy of solvation -63.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds