Wall clock time and date at job start Mon Mar 30 2020 05:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38528 * 119.63876 * 90.00098 * 10 9 7 12 12 C 1.37861 * 119.70776 * 180.68785 * 11 10 9 13 13 C 1.38274 * 119.44433 * 2.22295 * 12 11 10 14 14 C 1.39206 * 120.99591 * 355.19192 * 13 12 11 15 15 C 1.37872 * 119.09963 * 4.13313 * 14 13 12 16 16 C 1.50148 * 118.70210 * 184.45664 * 14 13 12 17 17 C 1.52229 * 112.03819 * 358.02870 * 16 14 13 18 18 C 1.52893 * 112.82049 * 31.80742 * 17 16 14 19 19 N 1.40404 * 111.47913 * 177.08522 * 13 12 11 20 20 C 1.47230 * 106.64050 * 23.52953 * 19 13 12 21 21 C 1.51567 * 133.24814 * 184.89217 * 12 11 10 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.07992 * 120.14346 * 0.70898 * 11 10 9 26 26 H 1.07999 * 120.07404 * 178.85819 * 15 14 13 27 27 H 1.09011 * 108.96363 * 237.37690 * 16 14 13 28 28 H 1.08998 * 108.97224 * 118.69713 * 16 14 13 29 29 H 1.08996 * 108.81868 * 270.94720 * 17 16 14 30 30 H 1.08995 * 108.81247 * 152.66111 * 17 16 14 31 31 H 1.09000 * 109.61095 * 176.99240 * 18 17 16 32 32 H 1.08996 * 109.74774 * 56.56979 * 18 17 16 33 33 H 1.09002 * 110.86782 * 87.36407 * 20 19 13 34 34 H 1.08996 * 110.86267 * 211.02838 * 20 19 13 35 35 H 1.09004 * 110.73396 * 281.62382 * 21 12 11 36 36 H 1.09006 * 110.72956 * 44.92908 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6752 -4.1707 1.1914 12 6 3.5820 -5.2092 1.1885 13 6 4.0707 -5.6815 -0.0156 14 6 3.5880 -5.1929 -1.2264 15 6 2.6708 -4.1635 -1.2162 16 6 4.0809 -5.8126 -2.5021 17 6 5.1158 -6.8994 -2.2466 18 6 4.8828 -7.6425 -0.9309 19 7 5.0276 -6.6906 0.1782 20 6 4.7632 -7.2732 1.5042 21 6 4.1881 -6.0615 2.2855 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 2.3132 -3.7693 2.1263 26 1 2.2998 -3.7600 -2.1468 27 1 4.5282 -5.0365 -3.1233 28 1 3.2351 -6.2470 -3.0350 29 1 6.1056 -6.4436 -2.2222 30 1 5.0816 -7.6170 -3.0662 31 1 5.6179 -8.4405 -0.8263 32 1 3.8787 -8.0665 -0.9202 33 1 4.0283 -8.0754 1.4363 34 1 5.6859 -7.6284 1.9631 35 1 4.9832 -5.5211 2.7993 36 1 3.4222 -6.3852 2.9903 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259259357.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:00 Heat of formation + Delta-G solvation = 20.602345 kcal Electronic energy + Delta-G solvation = -17150.440998 eV Core-core repulsion = 14598.391904 eV Total energy + Delta-G solvation = -2552.049094 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.80637 -36.72167 -35.40873 -33.10458 -30.86738 -29.86557 -29.00686 -26.89519 -24.80982 -23.42679 -22.10940 -21.70396 -20.08253 -18.60106 -16.29903 -16.16178 -16.01878 -15.01217 -14.78403 -14.54115 -14.03877 -13.62259 -13.24387 -12.91187 -12.54279 -12.26856 -12.17045 -11.92484 -11.64706 -11.54534 -11.18554 -11.11362 -10.92909 -10.60274 -10.54972 -10.43886 -10.06582 -9.76962 -9.41722 -9.01222 -8.39118 -7.98243 -7.07770 -6.00652 -4.04631 1.99677 2.07422 3.34365 3.37994 3.41852 3.97187 4.34708 4.52014 4.72103 4.78111 4.93093 5.03896 5.15863 5.26435 5.33436 5.47631 5.54463 5.58204 5.64729 5.80914 5.88923 5.94603 6.02763 6.05464 6.09951 6.23629 6.33912 6.43495 6.61436 6.83872 7.12510 7.19982 7.22352 7.38385 7.55233 7.81731 7.89349 7.95026 8.36410 9.00600 9.58957 11.08604 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032345 B = 0.005926 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.472528 B = 4723.636237 C = 5099.232039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.056 0.944 9 C 0.052 3.948 10 C -0.047 4.047 11 C -0.089 4.089 12 C -0.134 4.134 13 C 0.047 3.953 14 C -0.100 4.100 15 C -0.100 4.100 16 C -0.074 4.074 17 C -0.115 4.115 18 C 0.047 3.953 19 N -0.468 5.468 20 C 0.045 3.955 21 C -0.077 4.077 22 H 0.262 0.738 23 H 0.027 0.973 24 H 0.028 0.972 25 H 0.118 0.882 26 H 0.121 0.879 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.084 -15.102 -0.580 17.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.549 4.549 8 H 0.075 0.925 9 C 0.015 3.985 10 C -0.047 4.047 11 C -0.108 4.108 12 C -0.136 4.136 13 C -0.049 4.049 14 C -0.103 4.103 15 C -0.119 4.119 16 C -0.111 4.111 17 C -0.152 4.152 18 C -0.080 4.080 19 N -0.184 5.184 20 C -0.081 4.081 21 C -0.114 4.114 22 H 0.072 0.928 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.136 0.864 26 H 0.139 0.861 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.524 -14.886 -0.595 17.165 hybrid contribution -0.179 0.744 0.016 0.766 sum 8.345 -14.142 -0.579 16.431 Atomic orbital electron populations 1.69951 1.06018 1.26858 1.50637 1.25004 0.94867 0.99192 0.95241 0.86610 0.79542 0.82866 0.78749 1.20186 1.21244 1.20175 1.21054 0.93048 0.89927 1.50833 0.92539 1.18306 0.92482 0.89498 0.98240 1.20577 0.97311 0.95569 0.91288 1.20333 0.96811 0.95188 0.98425 1.20110 0.99721 0.99744 0.94052 1.19317 0.94024 0.97586 0.94013 1.19089 0.99479 0.99267 0.92423 1.20652 0.97319 0.95491 0.98430 1.20069 0.98262 0.97425 0.95365 1.21310 1.00182 0.97714 0.96033 1.22189 1.00222 0.94491 0.91124 1.61645 1.44312 1.10016 1.02409 1.23197 1.00136 0.96507 0.88278 1.21286 0.99676 0.94167 0.96313 0.92836 0.95442 0.95412 0.86411 0.86084 0.90738 0.91393 0.91263 0.91317 0.90625 0.94043 0.92960 0.89344 0.89964 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.52 9.09 -34.44 -0.31 -14.83 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.05 1.35 5.09 -29.03 -0.15 1.20 16 10 C -0.05 -1.05 5.08 -104.43 -0.53 -1.58 16 11 C -0.09 -1.83 9.70 -39.61 -0.38 -2.21 16 12 C -0.13 -2.43 6.33 -104.32 -0.66 -3.09 16 13 C 0.05 0.83 5.69 -83.56 -0.48 0.36 16 14 C -0.10 -1.80 5.82 -104.66 -0.61 -2.41 16 15 C -0.10 -2.04 9.47 -39.63 -0.38 -2.41 16 16 C -0.07 -1.04 6.02 -28.54 -0.17 -1.21 16 17 C -0.11 -1.37 5.96 -27.18 -0.16 -1.53 16 18 C 0.05 0.58 5.52 -3.89 -0.02 0.55 16 19 N -0.47 -6.99 5.24 -169.42 -0.89 -7.88 16 20 C 0.05 0.56 7.00 -2.47 -0.02 0.54 16 21 C -0.08 -1.07 7.05 -26.28 -0.19 -1.25 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 23 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 24 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 25 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 26 H 0.12 2.37 8.06 -52.49 -0.42 1.94 16 27 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.04 0.52 8.11 -51.93 -0.42 0.10 16 33 H 0.05 0.60 7.96 -51.93 -0.41 0.18 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 292.19 15.07 4.40 4.40 Total: -1.00 -30.78 292.19 -10.36 -41.14 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -5.44 Total: -2.24 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: -4.15 Total: -26.31 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: -0.15 Total: -33.80 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.78 -10.36 -41.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259259357.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.746 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds