Wall clock time and date at job start Mon Mar 30 2020 05:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38528 * 119.63876 * 90.00098 * 10 9 7 12 12 C 1.37861 * 119.70776 * 180.68785 * 11 10 9 13 13 C 1.38274 * 119.44433 * 2.22295 * 12 11 10 14 14 C 1.39206 * 120.99591 * 355.19192 * 13 12 11 15 15 C 1.37872 * 119.09963 * 4.13313 * 14 13 12 16 16 C 1.50148 * 118.70210 * 184.45664 * 14 13 12 17 17 C 1.52229 * 112.03819 * 358.02870 * 16 14 13 18 18 C 1.52893 * 112.82049 * 31.80742 * 17 16 14 19 19 N 1.40404 * 111.47913 * 177.08522 * 13 12 11 20 20 C 1.47230 * 106.64050 * 23.52953 * 19 13 12 21 21 C 1.51567 * 133.24814 * 184.89217 * 12 11 10 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.07992 * 120.14346 * 0.70898 * 11 10 9 26 26 H 1.07999 * 120.07404 * 178.85819 * 15 14 13 27 27 H 1.09011 * 108.96363 * 237.37690 * 16 14 13 28 28 H 1.08998 * 108.97224 * 118.69713 * 16 14 13 29 29 H 1.08996 * 108.81868 * 270.94720 * 17 16 14 30 30 H 1.08995 * 108.81247 * 152.66111 * 17 16 14 31 31 H 1.09000 * 109.61095 * 176.99240 * 18 17 16 32 32 H 1.08996 * 109.74774 * 56.56979 * 18 17 16 33 33 H 1.09002 * 110.86782 * 87.36407 * 20 19 13 34 34 H 1.08996 * 110.86267 * 211.02838 * 20 19 13 35 35 H 1.09004 * 110.73396 * 281.62382 * 21 12 11 36 36 H 1.09006 * 110.72956 * 44.92908 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6752 -4.1707 1.1914 12 6 3.5820 -5.2092 1.1885 13 6 4.0707 -5.6815 -0.0156 14 6 3.5880 -5.1929 -1.2264 15 6 2.6708 -4.1635 -1.2162 16 6 4.0809 -5.8126 -2.5021 17 6 5.1158 -6.8994 -2.2466 18 6 4.8828 -7.6425 -0.9309 19 7 5.0276 -6.6906 0.1782 20 6 4.7632 -7.2732 1.5042 21 6 4.1881 -6.0615 2.2855 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 2.3132 -3.7693 2.1263 26 1 2.2998 -3.7600 -2.1468 27 1 4.5282 -5.0365 -3.1233 28 1 3.2351 -6.2470 -3.0350 29 1 6.1056 -6.4436 -2.2222 30 1 5.0816 -7.6170 -3.0662 31 1 5.6179 -8.4405 -0.8263 32 1 3.8787 -8.0665 -0.9202 33 1 4.0283 -8.0754 1.4363 34 1 5.6859 -7.6284 1.9631 35 1 4.9832 -5.5211 2.7993 36 1 3.4222 -6.3852 2.9903 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259259357.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:59 Heat of formation + Delta-G solvation = 3.169003 kcal Electronic energy + Delta-G solvation = -17151.196965 eV Core-core repulsion = 14598.391904 eV Total energy + Delta-G solvation = -2552.805061 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.07163 -38.18640 -36.53166 -35.16773 -32.54490 -31.09723 -30.30855 -28.65112 -26.10345 -25.21626 -23.38395 -22.94276 -21.50200 -19.93171 -18.50642 -17.47241 -17.23430 -16.65616 -16.16190 -15.79128 -15.39526 -14.85890 -14.61710 -14.31951 -14.22544 -13.79390 -13.59673 -13.29463 -13.15398 -12.90314 -12.77040 -12.54463 -12.41557 -12.23522 -11.96736 -11.81265 -11.53574 -11.42627 -11.31893 -10.61415 -10.49146 -9.44065 -8.53648 -8.16227 -6.34541 0.50113 0.57004 1.37834 1.40798 1.49290 2.38258 2.76931 2.99939 3.09004 3.60797 3.68333 3.84878 3.97087 4.16033 4.18540 4.36532 4.45541 4.46160 4.53701 4.59440 4.72680 4.76114 4.88113 4.93570 5.02443 5.03453 5.10991 5.19707 5.27154 5.31707 5.33372 5.55471 5.57553 5.71918 5.80158 6.07268 6.15429 6.17359 6.36820 6.77300 7.33771 8.88031 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032345 B = 0.005926 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.472528 B = 4723.636237 C = 5099.232039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.530 4.530 8 H 0.050 0.950 9 C 0.063 3.937 10 C -0.080 4.080 11 C -0.105 4.105 12 C -0.143 4.143 13 C 0.050 3.950 14 C -0.104 4.104 15 C -0.115 4.115 16 C -0.077 4.077 17 C -0.112 4.112 18 C 0.043 3.957 19 N -0.477 5.477 20 C 0.049 3.951 21 C -0.077 4.077 22 H 0.266 0.734 23 H 0.001 0.999 24 H 0.003 0.997 25 H 0.111 0.889 26 H 0.116 0.884 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.581 -16.978 -0.678 20.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.568 4.568 8 H 0.068 0.932 9 C 0.026 3.974 10 C -0.080 4.080 11 C -0.124 4.124 12 C -0.146 4.146 13 C -0.048 4.048 14 C -0.106 4.106 15 C -0.134 4.134 16 C -0.114 4.114 17 C -0.150 4.150 18 C -0.083 4.083 19 N -0.192 5.192 20 C -0.077 4.077 21 C -0.114 4.114 22 H 0.075 0.925 23 H 0.020 0.980 24 H 0.021 0.979 25 H 0.129 0.871 26 H 0.134 0.866 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.136 0.864 35 H 0.108 0.892 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.034 -16.790 -0.691 20.103 hybrid contribution -0.923 1.222 0.053 1.532 sum 10.111 -15.569 -0.637 18.575 Atomic orbital electron populations 1.70073 1.07622 1.28039 1.51222 1.25917 0.95784 1.03029 0.94507 0.85509 0.78349 0.78140 0.79125 1.19332 1.20208 1.19367 1.21342 0.92905 0.91395 1.51119 0.93182 1.18025 0.92729 0.91016 0.95638 1.20283 0.98530 0.95979 0.93255 1.20291 0.98186 0.96569 0.97363 1.20537 0.98652 0.98904 0.96499 1.19652 0.93544 0.97991 0.93576 1.19446 0.98306 0.98169 0.94723 1.20651 0.98563 0.96768 0.97370 1.20193 0.99545 0.98271 0.93361 1.21340 0.98864 0.97565 0.97211 1.22355 1.01265 0.94548 0.90099 1.61643 1.42694 1.10489 1.04415 1.23349 1.01932 0.95820 0.86552 1.21436 1.00189 0.94120 0.95641 0.92495 0.98041 0.97917 0.87122 0.86587 0.90464 0.90028 0.91571 0.88048 0.87527 0.94065 0.91493 0.86369 0.89182 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.26 13.29 21.45 0.28 -56.98 16 2 C 0.01 0.34 5.46 84.66 0.46 0.80 16 3 Si 0.96 45.49 29.54 68.60 2.03 47.52 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.53 -31.58 9.09 25.60 0.23 -31.35 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 9 C 0.06 3.54 5.09 29.10 0.15 3.68 16 10 C -0.08 -3.79 5.08 -19.74 -0.10 -3.89 16 11 C -0.11 -4.52 9.70 22.25 0.22 -4.30 16 12 C -0.14 -5.12 6.33 -19.67 -0.12 -5.25 16 13 C 0.05 1.69 5.69 38.01 0.22 1.91 16 14 C -0.10 -3.68 5.82 -19.89 -0.12 -3.80 16 15 C -0.11 -4.87 9.47 22.24 0.21 -4.66 16 16 C -0.08 -2.01 6.02 29.42 0.18 -1.83 16 17 C -0.11 -2.26 5.96 30.30 0.18 -2.08 16 18 C 0.04 0.89 5.52 86.27 0.48 1.36 16 19 N -0.48 -12.59 5.24 -689.92 -3.62 -16.21 16 20 C 0.05 1.01 7.00 87.00 0.61 1.62 16 21 C -0.08 -1.94 7.05 30.89 0.22 -1.72 16 22 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 23 H 0.00 0.08 8.08 -2.38 -0.02 0.06 16 24 H 0.00 0.15 8.08 -2.39 -0.02 0.13 16 25 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 26 H 0.12 4.84 8.06 -2.91 -0.02 4.81 16 27 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.04 0.87 8.11 -2.39 -0.02 0.85 16 33 H 0.07 1.22 7.96 -2.39 -0.02 1.20 16 34 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 Total: -1.00 -69.27 292.19 2.55 -66.72 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 1.05 Total: 8.45 kcal Atomic # 6 Polarization: -52.31 SS G_CDS: 2.81 Total: -49.51 kcal Atomic # 7 Polarization: -69.85 SS G_CDS: -3.33 Total: -73.19 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -69.27 2.55 -66.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259259357.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.893 kcal (2) G-P(sol) polarization free energy of solvation -69.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds