Wall clock time and date at job start Mon Mar 30 2020 05:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36660 * 119.73457 * 2 1 4 4 C 1.39594 * 119.76454 * 179.73690 * 3 2 1 5 5 C 1.46487 * 134.04443 * 180.15517 * 4 3 2 6 6 C 1.34236 * 107.00473 * 180.33782 * 5 4 3 7 7 N 1.36838 * 109.93369 * 0.02562 * 6 5 4 8 8 C 1.46502 * 125.05893 * 179.97438 * 7 6 5 9 9 C 1.37685 * 109.87636 * 359.97438 * 7 6 5 10 10 C 1.39083 * 133.51027 * 179.97438 * 9 7 6 11 11 C 1.37789 * 119.77929 * 180.02562 * 10 9 7 12 12 C 1.50697 * 119.67039 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47287 * 265.02300 * 12 11 10 14 14 C 1.50697 * 109.47148 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00229 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00254 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99464 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00324 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46979 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46717 * 120.00149 * 18 16 14 21 21 H 1.48496 * 109.46878 * 239.99922 * 18 16 14 22 22 H 1.09002 * 109.47152 * 269.72802 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.72903 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.72884 * 1 2 3 25 25 H 1.08000 * 120.11692 * 359.97438 * 3 2 1 26 26 H 1.08000 * 126.49855 * 0.37666 * 5 4 3 27 27 H 1.07997 * 125.03122 * 179.97438 * 6 5 4 28 28 H 1.08996 * 109.47429 * 270.02330 * 8 7 6 29 29 H 1.09001 * 109.46861 * 30.02696 * 8 7 6 30 30 H 1.09002 * 109.46791 * 150.02235 * 8 7 6 31 31 H 1.07998 * 120.11308 * 0.02562 * 10 9 7 32 32 H 1.09009 * 109.46783 * 25.01921 * 12 11 10 33 33 H 1.09002 * 109.47730 * 145.02110 * 12 11 10 34 34 H 1.09000 * 109.46881 * 299.99748 * 13 12 11 35 35 H 1.09000 * 109.47192 * 59.99736 * 13 12 11 36 36 H 0.97001 * 119.99823 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.1867 0.0000 4 6 3.5808 1.1874 0.0056 5 6 4.5986 2.2409 0.0101 6 6 5.7945 1.6313 0.0070 7 7 5.6260 0.2733 0.0003 8 6 6.7124 -0.7095 -0.0051 9 6 4.2834 -0.0317 -0.0005 10 6 3.5731 -1.2275 -0.0066 11 6 2.1954 -1.2051 -0.0062 12 6 1.4283 -2.5022 -0.0133 13 6 1.0606 -2.8694 -1.4524 14 6 0.2941 -4.1668 -1.4596 15 1 0.0892 -4.6782 -0.5306 16 6 -0.1467 -4.7007 -2.6520 17 7 0.1024 -4.0777 -3.7832 18 14 -1.0963 -6.3092 -2.6610 19 1 -1.2426 -6.8054 -1.2690 20 1 -2.4409 -6.0869 -3.2507 21 1 -0.3607 -7.3137 -3.4704 22 1 -0.3633 -0.0049 1.0277 23 1 -0.3633 -0.8876 -0.5180 24 1 -0.3633 0.8924 -0.5096 25 1 1.6424 2.1206 -0.0004 26 1 4.4206 3.3061 0.0155 27 1 6.7485 2.1376 0.0087 28 1 6.9817 -0.9478 -1.0340 29 1 7.5790 -0.2959 0.5108 30 1 6.3849 -1.6159 0.5041 31 1 4.0996 -2.1704 -0.0116 32 1 2.0451 -3.2915 0.4168 33 1 0.5186 -2.3898 0.5766 34 1 0.4439 -2.0802 -1.8825 35 1 1.9702 -2.9820 -2.0424 36 1 -0.2073 -4.4534 -4.6222 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259337880.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:54 Heat of formation + Delta-G solvation = 40.311980 kcal Electronic energy + Delta-G solvation = -16743.395598 eV Core-core repulsion = 14192.201178 eV Total energy + Delta-G solvation = -2551.194420 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.98649 -37.69323 -33.82199 -32.62723 -31.44671 -31.11176 -28.15821 -27.04957 -25.10765 -24.71159 -22.02161 -20.89353 -20.10262 -19.28560 -16.88801 -16.34796 -15.42448 -15.16195 -14.70309 -14.44928 -13.96417 -13.57434 -13.23765 -13.02407 -12.49774 -12.43736 -12.37057 -12.18521 -11.93656 -11.51911 -11.28144 -11.00017 -10.89998 -10.64359 -10.38234 -10.24188 -9.75518 -9.53237 -9.14927 -9.00571 -8.31831 -7.50383 -7.22819 -5.96771 -3.99669 1.55639 2.06611 2.97577 3.02525 3.32537 3.40090 3.44160 4.31474 4.48839 4.78322 4.92274 5.05596 5.17961 5.37234 5.38645 5.47135 5.53288 5.69885 5.81851 5.86906 6.06955 6.16497 6.18155 6.31053 6.41123 6.50575 6.67049 6.73926 6.93138 7.07324 7.11838 7.17889 7.33955 7.53391 7.65828 7.74423 7.88144 8.04880 8.44490 9.08012 9.64181 11.14146 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.031939 B = 0.005269 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.453907 B = 5313.292799 C = 5821.773936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.102 4.102 3 C -0.078 4.078 4 C -0.121 4.121 5 C -0.205 4.205 6 C 0.036 3.964 7 N -0.493 5.493 8 C 0.081 3.919 9 C 0.096 3.904 10 C -0.135 4.135 11 C -0.033 4.033 12 C -0.078 4.078 13 C 0.030 3.970 14 C -0.520 4.520 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 H 0.060 0.940 23 H 0.085 0.915 24 H 0.057 0.943 25 H 0.116 0.884 26 H 0.141 0.859 27 H 0.161 0.839 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.021 0.979 35 H 0.016 0.984 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.267 10.333 8.312 16.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.103 4.103 3 C -0.097 4.097 4 C -0.125 4.125 5 C -0.231 4.231 6 C -0.088 4.088 7 N -0.177 5.177 8 C -0.061 4.061 9 C -0.009 4.009 10 C -0.155 4.155 11 C -0.035 4.035 12 C -0.116 4.116 13 C -0.007 4.007 14 C -0.559 4.559 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.718 3.282 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 H 0.079 0.921 23 H 0.103 0.897 24 H 0.076 0.924 25 H 0.134 0.866 26 H 0.158 0.842 27 H 0.179 0.821 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.133 0.867 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.040 0.960 35 H 0.034 0.966 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.526 10.098 8.124 16.696 hybrid contribution -0.257 -0.870 -0.247 0.941 sum 10.268 9.228 7.877 15.894 Atomic orbital electron populations 1.20857 0.91310 1.03503 1.01618 1.19309 0.96122 0.92153 1.02720 1.20038 0.91493 0.97347 1.00813 1.19086 0.93150 0.92235 1.08058 1.21588 0.90866 0.97864 1.12744 1.21632 0.99287 0.82084 1.05815 1.43743 1.04428 1.05552 1.64006 1.21867 0.89032 0.92420 1.02782 1.18250 0.82576 0.95534 1.04514 1.19852 0.93351 0.94511 1.07809 1.19889 0.92277 0.95952 0.95339 1.20832 0.97918 0.91088 1.01738 1.19085 0.96628 0.96193 0.88814 1.21309 1.34842 1.06932 0.92767 0.92570 1.25024 0.96286 0.97401 0.95695 1.69993 1.46588 1.39089 0.97671 0.86564 0.79741 0.83819 0.78051 1.19719 1.21023 1.21091 0.92094 0.89669 0.92433 0.86648 0.84171 0.82145 0.91547 0.90428 0.90206 0.86678 0.92572 0.91827 0.96038 0.96610 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 9.18 36.01 0.33 -1.61 16 2 C -0.10 -1.88 5.85 -104.99 -0.61 -2.49 16 3 C -0.08 -1.33 9.67 -39.65 -0.38 -1.71 16 4 C -0.12 -2.07 6.37 -105.14 -0.67 -2.74 16 5 C -0.21 -2.86 11.08 -37.67 -0.42 -3.28 16 6 C 0.04 0.45 11.29 -16.73 -0.19 0.26 16 7 N -0.49 -6.91 3.18 -121.80 -0.39 -7.29 16 8 C 0.08 0.81 11.03 59.85 0.66 1.47 16 9 C 0.10 1.66 6.81 -83.99 -0.57 1.09 16 10 C -0.13 -2.49 9.57 -39.43 -0.38 -2.87 16 11 C -0.03 -0.66 5.13 -104.58 -0.54 -1.19 16 12 C -0.08 -1.67 4.57 -27.88 -0.13 -1.80 16 13 C 0.03 0.78 4.75 -27.88 -0.13 0.65 16 14 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.64 5.46 -17.81 -0.10 1.54 16 17 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 18 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.08 1.62 5.36 -51.93 -0.28 1.35 16 24 H 0.06 0.85 8.07 -51.93 -0.42 0.43 16 25 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 26 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 27 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 31 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 32 H 0.06 1.16 8.04 -51.92 -0.42 0.74 16 33 H 0.06 1.30 6.95 -51.93 -0.36 0.94 16 34 H 0.02 0.59 6.89 -51.93 -0.36 0.24 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 301.45 15.07 4.54 4.54 Total: -1.00 -32.47 301.45 -8.75 -41.22 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.18 Total: -1.01 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: -3.44 Total: -27.72 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.35 Total: -33.69 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.47 -8.75 -41.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259337880.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.533 kcal (2) G-P(sol) polarization free energy of solvation -32.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds