Wall clock time and date at job start Mon Mar 30 2020 05:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36660 * 119.73457 * 2 1 4 4 C 1.39594 * 119.76454 * 179.73690 * 3 2 1 5 5 C 1.46487 * 134.04443 * 180.15517 * 4 3 2 6 6 C 1.34236 * 107.00473 * 180.33782 * 5 4 3 7 7 N 1.36838 * 109.93369 * 0.02562 * 6 5 4 8 8 C 1.46502 * 125.05893 * 179.97438 * 7 6 5 9 9 C 1.37685 * 109.87636 * 359.97438 * 7 6 5 10 10 C 1.39083 * 133.51027 * 179.97438 * 9 7 6 11 11 C 1.37789 * 119.77929 * 180.02562 * 10 9 7 12 12 C 1.50697 * 119.67039 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47287 * 265.02300 * 12 11 10 14 14 C 1.50697 * 109.47148 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00229 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00254 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99464 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00324 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46979 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46717 * 120.00149 * 18 16 14 21 21 H 1.48496 * 109.46878 * 239.99922 * 18 16 14 22 22 H 1.09002 * 109.47152 * 269.72802 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.72903 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.72884 * 1 2 3 25 25 H 1.08000 * 120.11692 * 359.97438 * 3 2 1 26 26 H 1.08000 * 126.49855 * 0.37666 * 5 4 3 27 27 H 1.07997 * 125.03122 * 179.97438 * 6 5 4 28 28 H 1.08996 * 109.47429 * 270.02330 * 8 7 6 29 29 H 1.09001 * 109.46861 * 30.02696 * 8 7 6 30 30 H 1.09002 * 109.46791 * 150.02235 * 8 7 6 31 31 H 1.07998 * 120.11308 * 0.02562 * 10 9 7 32 32 H 1.09009 * 109.46783 * 25.01921 * 12 11 10 33 33 H 1.09002 * 109.47730 * 145.02110 * 12 11 10 34 34 H 1.09000 * 109.46881 * 299.99748 * 13 12 11 35 35 H 1.09000 * 109.47192 * 59.99736 * 13 12 11 36 36 H 0.97001 * 119.99823 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.1867 0.0000 4 6 3.5808 1.1874 0.0056 5 6 4.5986 2.2409 0.0101 6 6 5.7945 1.6313 0.0070 7 7 5.6260 0.2733 0.0003 8 6 6.7124 -0.7095 -0.0051 9 6 4.2834 -0.0317 -0.0005 10 6 3.5731 -1.2275 -0.0066 11 6 2.1954 -1.2051 -0.0062 12 6 1.4283 -2.5022 -0.0133 13 6 1.0606 -2.8694 -1.4524 14 6 0.2941 -4.1668 -1.4596 15 1 0.0892 -4.6782 -0.5306 16 6 -0.1467 -4.7007 -2.6520 17 7 0.1024 -4.0777 -3.7832 18 14 -1.0963 -6.3092 -2.6610 19 1 -1.2426 -6.8054 -1.2690 20 1 -2.4409 -6.0869 -3.2507 21 1 -0.3607 -7.3137 -3.4704 22 1 -0.3633 -0.0049 1.0277 23 1 -0.3633 -0.8876 -0.5180 24 1 -0.3633 0.8924 -0.5096 25 1 1.6424 2.1206 -0.0004 26 1 4.4206 3.3061 0.0155 27 1 6.7485 2.1376 0.0087 28 1 6.9817 -0.9478 -1.0340 29 1 7.5790 -0.2959 0.5108 30 1 6.3849 -1.6159 0.5041 31 1 4.0996 -2.1704 -0.0116 32 1 2.0451 -3.2915 0.4168 33 1 0.5186 -2.3898 0.5766 34 1 0.4439 -2.0802 -1.8825 35 1 1.9702 -2.9820 -2.0424 36 1 -0.2073 -4.4534 -4.6222 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259337880.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:54 Heat of formation + Delta-G solvation = 23.325498 kcal Electronic energy + Delta-G solvation = -16744.132188 eV Core-core repulsion = 14192.201178 eV Total energy + Delta-G solvation = -2551.931010 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.14996 -39.04098 -35.68470 -34.11861 -32.76951 -32.67415 -29.73083 -28.26994 -26.57189 -26.17826 -23.67138 -22.49095 -21.26490 -20.61180 -18.52191 -18.00784 -16.72358 -16.51613 -16.16665 -16.10987 -15.24610 -14.89100 -14.62794 -14.29979 -14.18864 -13.89934 -13.62128 -13.35003 -13.21048 -13.01548 -12.87258 -12.82665 -12.55731 -12.21877 -11.99282 -11.77279 -11.57582 -11.30925 -11.07996 -10.54799 -10.42390 -8.82963 -8.42278 -8.17786 -6.30343 0.27499 0.71900 1.40603 1.41009 1.54694 1.87990 2.01898 2.41962 2.97042 3.14407 3.78063 3.94011 4.04855 4.09747 4.22684 4.42382 4.44375 4.55518 4.61483 4.70209 4.76112 4.84489 4.88754 4.92155 4.97327 5.08373 5.11457 5.28690 5.33364 5.50583 5.56300 5.73127 5.86529 5.90034 5.92282 6.01949 6.24511 6.37499 6.53075 6.86908 7.38935 8.93561 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.031939 B = 0.005269 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.453907 B = 5313.292799 C = 5821.773936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.120 4.120 3 C -0.083 4.083 4 C -0.137 4.137 5 C -0.225 4.225 6 C 0.056 3.944 7 N -0.496 5.496 8 C 0.073 3.927 9 C 0.071 3.929 10 C -0.142 4.142 11 C -0.066 4.066 12 C -0.061 4.061 13 C 0.041 3.959 14 C -0.540 4.540 15 H 0.063 0.937 16 C 0.000 4.000 17 N -0.935 5.935 18 Si 0.966 3.034 19 H -0.260 1.260 20 H -0.277 1.277 21 H -0.279 1.279 22 H 0.079 0.921 23 H 0.053 0.947 24 H 0.074 0.926 25 H 0.139 0.861 26 H 0.166 0.834 27 H 0.210 0.790 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.115 0.885 32 H 0.057 0.943 33 H 0.068 0.932 34 H -0.004 1.004 35 H -0.019 1.019 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.546 11.189 9.268 18.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.121 4.121 3 C -0.101 4.101 4 C -0.142 4.142 5 C -0.250 4.250 6 C -0.069 4.069 7 N -0.179 5.179 8 C -0.068 4.068 9 C -0.035 4.035 10 C -0.163 4.163 11 C -0.067 4.067 12 C -0.098 4.098 13 C 0.004 3.996 14 C -0.578 4.578 15 H 0.081 0.919 16 C -0.198 4.198 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.184 1.184 20 H -0.203 1.203 21 H -0.205 1.205 22 H 0.098 0.902 23 H 0.072 0.928 24 H 0.093 0.907 25 H 0.157 0.843 26 H 0.183 0.817 27 H 0.227 0.773 28 H 0.090 0.910 29 H 0.133 0.867 30 H 0.094 0.906 31 H 0.133 0.867 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.015 0.985 35 H 0.000 1.000 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.824 10.950 9.097 18.506 hybrid contribution -0.501 -1.041 -0.552 1.280 sum 11.322 9.910 8.546 17.304 Atomic orbital electron populations 1.20799 0.90633 1.02726 1.02549 1.19497 0.96840 0.92317 1.03431 1.20304 0.92034 0.97667 1.00084 1.19613 0.93765 0.93520 1.07316 1.21956 0.90392 0.98678 1.13964 1.22442 1.00871 0.81214 1.02378 1.44119 1.03864 1.07044 1.62910 1.22160 0.88978 0.91973 1.03686 1.18356 0.84618 0.95155 1.05328 1.19907 0.93215 0.95401 1.07728 1.19782 0.92926 0.95534 0.98436 1.20524 0.98468 0.92471 0.98370 1.18882 0.94312 0.95029 0.91393 1.21729 1.35084 1.07767 0.93255 0.91924 1.25996 0.97237 1.01396 0.95147 1.70136 1.47800 1.41119 0.98457 0.85382 0.78116 0.78790 0.78657 1.18388 1.20312 1.20469 0.90244 0.92802 0.90719 0.84283 0.81662 0.77341 0.91033 0.86689 0.90624 0.86679 0.92474 0.91339 0.98519 1.00043 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.77 9.18 71.24 0.65 -3.12 16 2 C -0.12 -4.50 5.85 -20.10 -0.12 -4.62 16 3 C -0.08 -2.78 9.67 22.23 0.22 -2.56 16 4 C -0.14 -4.56 6.37 -20.20 -0.13 -4.69 16 5 C -0.23 -5.64 11.08 23.51 0.26 -5.38 16 6 C 0.06 1.17 11.29 83.00 0.94 2.10 16 7 N -0.50 -12.77 3.18 -539.27 -1.71 -14.48 16 8 C 0.07 1.27 11.03 127.77 1.41 2.68 16 9 C 0.07 2.45 6.81 39.03 0.27 2.71 16 10 C -0.14 -5.43 9.57 22.37 0.21 -5.21 16 11 C -0.07 -2.70 5.13 -19.84 -0.10 -2.80 16 12 C -0.06 -2.73 4.57 29.85 0.14 -2.60 16 13 C 0.04 2.27 4.75 29.85 0.14 2.41 16 14 C -0.54 -31.51 9.11 25.60 0.23 -31.27 16 15 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 16 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 17 N -0.93 -58.41 13.29 21.45 0.28 -58.12 16 18 Si 0.97 44.94 29.54 68.60 2.03 46.96 16 19 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 23 H 0.05 2.16 5.36 -2.39 -0.01 2.15 16 24 H 0.07 2.21 8.07 -2.38 -0.02 2.19 16 25 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 26 H 0.17 3.17 8.06 -2.91 -0.02 3.14 16 27 H 0.21 2.25 8.06 -2.91 -0.02 2.22 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.39 8.10 -2.39 -0.02 1.37 16 31 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 32 H 0.06 2.47 8.04 -2.38 -0.02 2.45 16 33 H 0.07 2.93 6.95 -2.39 -0.02 2.91 16 34 H 0.00 -0.21 6.89 -2.39 -0.02 -0.23 16 35 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 36 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -72.64 301.45 6.23 -66.41 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 1.05 Total: 11.13 kcal Atomic # 6 Polarization: -56.48 SS G_CDS: 4.58 Total: -51.90 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -1.43 Total: -72.61 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -72.64 6.23 -66.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259337880.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.738 kcal (2) G-P(sol) polarization free energy of solvation -72.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds