Wall clock time and date at job start Mon Mar 30 2020 05:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36660 * 119.73705 * 2 1 4 4 C 1.39588 * 119.76695 * 179.73492 * 3 2 1 5 5 C 1.46489 * 134.03746 * 180.19981 * 4 3 2 6 6 C 1.34234 * 107.00394 * 180.32728 * 5 4 3 7 7 N 1.36831 * 109.93464 * 359.97438 * 6 5 4 8 8 C 1.46499 * 125.06298 * 180.02562 * 7 6 5 9 9 C 1.37696 * 109.87767 * 0.02562 * 7 6 5 10 10 C 1.39080 * 133.51954 * 180.02562 * 9 7 6 11 11 C 1.50707 * 120.10823 * 359.95384 * 10 9 7 12 12 C 1.37786 * 119.78226 * 179.97438 * 10 9 7 13 13 C 1.50704 * 119.66819 * 179.97438 * 12 10 9 14 14 C 1.50694 * 109.46984 * 270.02026 * 13 12 10 15 15 H 1.07999 * 120.00316 * 0.02562 * 14 13 12 16 16 C 1.37884 * 120.00001 * 180.02562 * 14 13 12 17 17 N 1.31505 * 119.99938 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99770 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47277 * 89.99597 * 18 16 14 20 20 H 1.48504 * 109.46762 * 210.00228 * 18 16 14 21 21 H 1.48506 * 109.47048 * 329.99508 * 18 16 14 22 22 H 1.09004 * 109.47486 * 269.72372 * 1 2 3 23 23 H 1.09003 * 109.47323 * 149.72811 * 1 2 3 24 24 H 1.09001 * 109.47706 * 29.72724 * 1 2 3 25 25 H 1.08002 * 120.11821 * 0.02562 * 3 2 1 26 26 H 1.08006 * 126.49795 * 0.34632 * 5 4 3 27 27 H 1.07992 * 125.03428 * 180.02562 * 6 5 4 28 28 H 1.09004 * 109.47221 * 262.92532 * 8 7 6 29 29 H 1.09000 * 109.46703 * 22.92351 * 8 7 6 30 30 H 1.09004 * 109.47497 * 142.92242 * 8 7 6 31 31 H 1.09004 * 109.47130 * 276.81812 * 11 10 9 32 32 H 1.08998 * 109.47245 * 36.82481 * 11 10 9 33 33 H 1.08999 * 109.47122 * 156.82772 * 11 10 9 34 34 H 1.08996 * 109.46910 * 30.02405 * 13 12 10 35 35 H 1.08999 * 109.46696 * 150.02265 * 13 12 10 36 36 H 0.97008 * 119.99820 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1848 1.1866 0.0000 4 6 3.5807 1.1874 0.0056 5 6 4.5984 2.2410 0.0109 6 6 5.7944 1.6315 0.0077 7 7 5.6260 0.2736 0.0013 8 6 6.7125 -0.7091 -0.0032 9 6 4.2833 -0.0316 -0.0004 10 6 3.5731 -1.2274 -0.0056 11 6 4.3079 -2.5432 -0.0121 12 6 2.1954 -1.2051 -0.0054 13 6 1.4283 -2.5023 -0.0117 14 6 1.1729 -2.9279 -1.4345 15 1 1.5306 -2.3201 -2.2525 16 6 0.4825 -4.0933 -1.6922 17 7 0.2601 -4.4649 -2.9339 18 14 -0.1368 -5.1442 -0.2774 19 1 -1.5056 -4.7094 0.0999 20 1 -0.1674 -6.5688 -0.6956 21 1 0.7706 -4.9898 0.8880 22 1 -0.3634 -0.0050 1.0277 23 1 -0.3634 -0.8875 -0.5181 24 1 -0.3634 0.8924 -0.5096 25 1 1.6424 2.1206 0.0004 26 1 4.4202 3.3062 0.0168 27 1 6.7482 2.1379 0.0106 28 1 6.8972 -1.0419 -1.0246 29 1 7.6168 -0.2527 0.3994 30 1 6.4319 -1.5639 0.6123 31 1 4.5911 -2.7961 -1.0339 32 1 5.2035 -2.4622 0.6038 33 1 3.6604 -3.3229 0.3889 34 1 2.0094 -3.2704 0.4987 35 1 0.4773 -2.3644 0.5026 36 1 -0.2259 -5.2846 -3.1151 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259375422.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:56 Heat of formation + Delta-G solvation = 36.275811 kcal Electronic energy + Delta-G solvation = -17351.461135 eV Core-core repulsion = 14800.091693 eV Total energy + Delta-G solvation = -2551.369442 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.18785 -38.97776 -35.39777 -34.58387 -33.15176 -32.05860 -29.30047 -28.47642 -27.69346 -25.69761 -24.47897 -21.94044 -21.04747 -20.53787 -18.94564 -17.84363 -16.86834 -16.29292 -16.14716 -16.08435 -15.08631 -14.61001 -14.52399 -14.32022 -14.10084 -13.95332 -13.74192 -13.57938 -13.37717 -13.23950 -12.86216 -12.65015 -12.61593 -12.09669 -11.94262 -11.77278 -11.63985 -11.28666 -11.18711 -10.73851 -10.19217 -8.74037 -8.27174 -8.22803 -6.28871 0.36428 0.81672 1.36992 1.37846 1.49772 1.92445 2.07810 2.37036 3.02933 3.08296 3.86767 3.94828 4.07092 4.16519 4.21789 4.34475 4.46973 4.59037 4.63524 4.69225 4.72282 4.86530 4.92406 4.93573 4.98395 5.06044 5.13712 5.19484 5.29618 5.39353 5.49459 5.61332 5.78622 5.95385 6.00378 6.13989 6.31622 6.47951 6.60055 6.76319 7.33154 8.90992 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.028725 B = 0.007380 C = 0.006396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.521646 B = 3793.046572 C = 4376.493351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.120 4.120 3 C -0.094 4.094 4 C -0.140 4.140 5 C -0.227 4.227 6 C 0.054 3.946 7 N -0.491 5.491 8 C 0.065 3.935 9 C 0.074 3.926 10 C -0.113 4.113 11 C -0.107 4.107 12 C -0.055 4.055 13 C 0.027 3.973 14 C -0.500 4.500 15 H 0.021 0.979 16 C 0.010 3.990 17 N -0.951 5.951 18 Si 0.943 3.057 19 H -0.265 1.265 20 H -0.283 1.283 21 H -0.246 1.246 22 H 0.075 0.925 23 H 0.053 0.947 24 H 0.072 0.928 25 H 0.136 0.864 26 H 0.164 0.836 27 H 0.210 0.790 28 H 0.067 0.933 29 H 0.117 0.883 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.033 0.967 35 H 0.029 0.971 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.762 10.261 9.741 18.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.121 4.121 3 C -0.112 4.112 4 C -0.145 4.145 5 C -0.252 4.252 6 C -0.070 4.070 7 N -0.175 5.175 8 C -0.075 4.075 9 C -0.032 4.032 10 C -0.115 4.115 11 C -0.163 4.163 12 C -0.057 4.057 13 C -0.010 4.010 14 C -0.538 4.538 15 H 0.039 0.961 16 C -0.186 4.186 17 N -0.592 5.592 18 Si 0.766 3.234 19 H -0.190 1.190 20 H -0.209 1.209 21 H -0.170 1.170 22 H 0.094 0.906 23 H 0.072 0.928 24 H 0.091 0.909 25 H 0.153 0.847 26 H 0.181 0.819 27 H 0.226 0.774 28 H 0.086 0.914 29 H 0.135 0.865 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.988 9.902 9.635 18.292 hybrid contribution -0.644 -0.805 -0.235 1.058 sum 11.344 9.096 9.400 17.315 Atomic orbital electron populations 1.20729 0.90847 1.02552 1.02165 1.19505 0.96854 0.92384 1.03316 1.20232 0.92117 0.97418 1.01431 1.19580 0.93712 0.93566 1.07651 1.21905 0.90440 0.98502 1.14325 1.22407 1.00737 0.81250 1.02655 1.44018 1.03708 1.06874 1.62899 1.22404 0.89115 0.92526 1.03500 1.18170 0.84564 0.94602 1.05894 1.18827 0.92802 0.93261 1.06641 1.20891 0.99849 0.94066 1.01493 1.19656 0.92586 0.95607 0.97833 1.18654 0.95213 0.91497 0.95664 1.20977 1.34795 1.06693 0.91353 0.96068 1.25890 0.95830 0.98740 0.98152 1.70061 1.42984 1.24995 1.21118 0.85766 0.79876 0.77645 0.80120 1.18967 1.20910 1.16954 0.90594 0.92767 0.90903 0.84660 0.81871 0.77371 0.91438 0.86497 0.89823 0.92811 0.89769 0.91835 0.94917 0.95234 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.99 9.16 71.23 0.65 -3.34 16 2 C -0.12 -4.98 5.84 -20.10 -0.12 -5.10 16 3 C -0.09 -3.47 9.67 22.23 0.21 -3.25 16 4 C -0.14 -5.08 6.37 -20.20 -0.13 -5.21 16 5 C -0.23 -6.19 11.08 23.51 0.26 -5.93 16 6 C 0.05 1.24 11.27 83.00 0.94 2.18 16 7 N -0.49 -13.62 3.18 -539.28 -1.71 -15.33 16 8 C 0.06 1.24 10.31 127.77 1.32 2.56 16 9 C 0.07 2.72 6.74 39.03 0.26 2.99 16 10 C -0.11 -4.69 5.89 -19.77 -0.12 -4.80 16 11 C -0.11 -3.93 8.99 71.24 0.64 -3.29 16 12 C -0.06 -2.54 5.07 -19.84 -0.10 -2.64 16 13 C 0.03 1.31 3.05 29.10 0.09 1.40 16 14 C -0.50 -29.43 9.21 25.60 0.24 -29.20 16 15 H 0.02 1.42 7.98 -2.91 -0.02 1.39 16 16 C 0.01 0.61 5.47 84.66 0.46 1.08 16 17 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 18 Si 0.94 44.27 27.47 68.60 1.88 46.16 16 19 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16 22 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 23 H 0.05 2.37 6.30 -2.39 -0.02 2.35 16 24 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 25 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 26 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 27 H 0.21 2.57 8.06 -2.91 -0.02 2.54 16 28 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.12 1.30 8.11 -2.39 -0.02 1.28 16 30 H 0.08 1.64 5.18 -2.38 -0.01 1.62 16 31 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.08 2.40 5.06 -2.39 -0.01 2.39 16 33 H 0.06 2.48 5.68 -2.39 -0.01 2.47 16 34 H 0.03 1.57 4.91 -2.39 -0.01 1.56 16 35 H 0.03 1.41 6.08 -2.39 -0.01 1.39 16 36 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 Total: -1.00 -73.72 287.78 6.10 -67.61 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 1.02 Total: 14.02 kcal Atomic # 6 Polarization: -57.15 SS G_CDS: 4.61 Total: -52.55 kcal Atomic # 7 Polarization: -73.83 SS G_CDS: -1.41 Total: -75.24 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.16 kcal Total: -73.72 6.10 -67.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259375422.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.890 kcal (2) G-P(sol) polarization free energy of solvation -73.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds