Wall clock time and date at job start Mon Mar 30 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39133 * 120.10853 * 2 1 4 4 N 1.37680 * 133.50622 * 0.02562 * 3 2 1 5 5 H 0.97006 * 125.06362 * 359.96859 * 4 3 2 6 6 C 1.36829 * 109.87496 * 180.02562 * 4 3 2 7 7 C 1.34239 * 109.92845 * 359.97438 * 6 4 3 8 8 C 1.40666 * 119.33262 * 180.32107 * 3 2 1 9 9 C 1.39639 * 119.92719 * 359.40622 * 8 3 2 10 10 C 1.36623 * 119.75918 * 0.59927 * 9 8 3 11 11 C 1.37739 * 120.11090 * 180.02562 * 2 1 3 12 12 C 1.50701 * 119.67174 * 0.02562 * 11 2 1 13 13 C 1.52997 * 109.47368 * 84.99585 * 12 11 2 14 14 C 1.53006 * 109.47116 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.46881 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00309 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99557 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00121 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99798 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47414 * 59.99332 * 19 17 15 21 21 H 1.48497 * 109.46970 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46864 * 299.99603 * 19 17 15 23 23 H 1.08991 * 109.47298 * 89.99697 * 1 2 3 24 24 H 1.09006 * 109.46727 * 209.99894 * 1 2 3 25 25 H 1.09007 * 109.46807 * 329.99208 * 1 2 3 26 26 H 1.07998 * 125.03306 * 179.97438 * 6 4 3 27 27 H 1.08002 * 126.49782 * 179.97438 * 7 6 4 28 28 H 1.07991 * 120.11656 * 180.32168 * 9 8 3 29 29 H 1.08005 * 119.73286 * 179.72106 * 10 9 8 30 30 H 1.08997 * 109.47467 * 205.00124 * 12 11 2 31 31 H 1.09008 * 109.46430 * 324.99573 * 12 11 2 32 32 H 1.09000 * 109.47382 * 300.00146 * 13 12 11 33 33 H 1.08999 * 109.46911 * 60.00178 * 13 12 11 34 34 H 1.09000 * 109.46741 * 300.00081 * 14 13 12 35 35 H 1.08995 * 109.46743 * 60.00083 * 14 13 12 36 36 H 0.97005 * 119.99613 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2050 1.2036 0.0000 4 7 1.8166 2.5245 0.0004 5 1 0.8976 2.8352 0.0004 6 6 2.9199 3.3338 -0.0004 7 6 4.0353 2.5868 -0.0008 8 6 3.6115 1.1846 -0.0069 9 6 4.2917 -0.0349 -0.0011 10 6 3.5863 -1.2049 -0.0011 11 6 2.1980 -1.1915 -0.0005 12 6 1.4396 -2.4938 -0.0017 13 6 1.0747 -2.8702 -1.4390 14 6 0.3041 -4.1920 -1.4401 15 6 -0.0547 -4.5631 -2.8559 16 1 0.2372 -3.9203 -3.6732 17 6 -0.7566 -5.7228 -3.1078 18 7 -1.1126 -6.5053 -2.1125 19 14 -1.2008 -6.1832 -4.8628 20 1 0.0402 -6.3337 -5.6644 21 1 -1.9488 -7.4660 -4.8638 22 1 -2.0465 -5.1161 -5.4555 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8901 0.5139 25 1 -0.3633 0.8900 0.5140 26 1 2.8968 4.4135 -0.0006 27 1 5.0521 2.9507 -0.0018 28 1 5.3715 -0.0531 -0.0011 29 1 4.1129 -2.1479 -0.0012 30 1 2.0613 -3.2768 0.4323 31 1 0.5291 -2.3843 0.5876 32 1 0.4529 -2.0872 -1.8731 33 1 1.9852 -2.9795 -2.0282 34 1 0.9256 -4.9752 -1.0060 35 1 -0.6063 -4.0822 -0.8510 36 1 -1.6061 -7.3214 -2.2898 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259375721.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:08 Heat of formation + Delta-G solvation = 28.244884 kcal Electronic energy + Delta-G solvation = -16512.330423 eV Core-core repulsion = 13960.612734 eV Total energy + Delta-G solvation = -2551.717689 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.16242 -37.67120 -34.31237 -33.09808 -31.90361 -29.87224 -29.18079 -26.99618 -25.94569 -23.33718 -21.95698 -20.66252 -20.27173 -19.76859 -17.72477 -16.25150 -15.72533 -15.21695 -14.58815 -14.43040 -14.27793 -13.51481 -13.21040 -13.12131 -13.03852 -12.58526 -12.32186 -12.04724 -11.87394 -11.22173 -11.20243 -11.15397 -10.81636 -10.57121 -10.54319 -10.32008 -9.57232 -9.42578 -9.20891 -9.01295 -8.29965 -7.92888 -7.44650 -5.95454 -3.97366 1.30440 1.85337 2.77441 3.18847 3.36076 3.40137 3.43099 4.08589 4.49903 4.80707 4.90586 5.13672 5.25267 5.39463 5.40033 5.40940 5.62194 5.72826 5.79202 5.87000 6.02728 6.07539 6.16810 6.20022 6.34374 6.53805 6.68538 6.76072 6.80311 6.87412 7.00972 7.11156 7.20459 7.37588 7.57398 7.73643 7.89448 8.05700 8.49018 9.09831 9.66334 11.15810 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.039569 B = 0.004331 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.463431 B = 6462.740413 C = 6594.083926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 C 0.100 3.900 4 N -0.597 5.597 5 H 0.412 0.588 6 C 0.040 3.960 7 C -0.206 4.206 8 C -0.119 4.119 9 C -0.081 4.081 10 C -0.135 4.135 11 C -0.047 4.047 12 C -0.084 4.084 13 C -0.101 4.101 14 C 0.021 3.979 15 C -0.519 4.519 16 H 0.053 0.947 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.049 0.951 26 H 0.165 0.835 27 H 0.142 0.858 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.016 0.984 35 H 0.015 0.985 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.244 17.949 6.223 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.101 4.101 3 C -0.006 4.006 4 N -0.200 5.200 5 H 0.248 0.752 6 C -0.086 4.086 7 C -0.231 4.231 8 C -0.124 4.124 9 C -0.099 4.099 10 C -0.154 4.154 11 C -0.048 4.048 12 C -0.121 4.121 13 C -0.139 4.139 14 C -0.016 4.016 15 C -0.558 4.558 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.089 0.911 24 H 0.097 0.903 25 H 0.068 0.932 26 H 0.183 0.817 27 H 0.159 0.841 28 H 0.135 0.865 29 H 0.140 0.860 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.034 0.966 35 H 0.033 0.967 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.042 17.853 6.263 20.188 hybrid contribution -0.633 -0.076 -1.012 1.196 sum 6.409 17.777 5.252 19.613 Atomic orbital electron populations 1.20760 0.91410 1.02296 1.02513 1.18687 0.95363 0.89564 1.06444 1.18059 0.93726 0.84372 1.04478 1.41737 1.08354 1.04260 1.65666 0.75164 1.21711 0.85749 0.96128 1.05044 1.21642 0.97891 0.91033 1.12580 1.19146 0.92013 0.93550 1.07670 1.20183 0.99058 0.90560 1.00120 1.20604 0.93517 0.97874 1.03410 1.19710 0.93484 0.94350 0.97260 1.20816 0.99047 0.92303 0.99961 1.21596 0.99921 0.99900 0.92482 1.19117 0.94879 0.90793 0.96827 1.21245 1.34996 1.06409 0.93102 0.92832 1.25015 0.96030 0.96499 0.96885 1.69957 1.39445 1.13428 1.30797 0.86686 0.78567 0.77640 0.85273 1.20256 1.21312 1.20304 0.91069 0.90309 0.93244 0.81744 0.84061 0.86466 0.85985 0.91426 0.91215 0.93387 0.93337 0.96612 0.96669 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 9.34 36.01 0.34 -1.20 16 2 C -0.10 -1.51 5.89 -104.47 -0.62 -2.12 16 3 C 0.10 1.45 6.95 -83.99 -0.58 0.87 16 4 N -0.60 -6.62 6.07 -10.65 -0.06 -6.68 16 5 H 0.41 3.43 8.87 -40.82 -0.36 3.07 16 6 C 0.04 0.39 11.82 -16.73 -0.20 0.19 16 7 C -0.21 -2.40 11.08 -37.67 -0.42 -2.82 16 8 C -0.12 -1.73 6.37 -105.14 -0.67 -2.40 16 9 C -0.08 -1.15 10.05 -39.64 -0.40 -1.54 16 10 C -0.14 -2.06 9.59 -39.94 -0.38 -2.44 16 11 C -0.05 -0.76 5.13 -104.58 -0.54 -1.30 16 12 C -0.08 -1.48 4.82 -27.88 -0.13 -1.62 16 13 C -0.10 -2.15 5.14 -26.73 -0.14 -2.28 16 14 C 0.02 0.54 4.97 -27.88 -0.14 0.41 16 15 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 19 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 24 H 0.08 1.11 6.00 -51.93 -0.31 0.80 16 25 H 0.05 0.55 7.99 -51.92 -0.42 0.13 16 26 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 27 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 29 H 0.12 1.70 8.06 -52.48 -0.42 1.27 16 30 H 0.07 1.16 8.04 -51.93 -0.42 0.75 16 31 H 0.07 1.19 6.13 -51.92 -0.32 0.87 16 32 H 0.05 1.01 7.86 -51.93 -0.41 0.60 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 301.67 15.07 4.55 4.55 Total: -1.00 -32.38 301.67 -9.25 -41.63 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -5.16 Total: 0.08 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: -4.29 Total: -30.01 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.67 Total: -33.19 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.38 -9.25 -41.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259375721.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.876 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds