Wall clock time and date at job start Mon Mar 30 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39133 * 120.10853 * 2 1 4 4 N 1.37680 * 133.50622 * 0.02562 * 3 2 1 5 5 H 0.97006 * 125.06362 * 359.96859 * 4 3 2 6 6 C 1.36829 * 109.87496 * 180.02562 * 4 3 2 7 7 C 1.34239 * 109.92845 * 359.97438 * 6 4 3 8 8 C 1.40666 * 119.33262 * 180.32107 * 3 2 1 9 9 C 1.39639 * 119.92719 * 359.40622 * 8 3 2 10 10 C 1.36623 * 119.75918 * 0.59927 * 9 8 3 11 11 C 1.37739 * 120.11090 * 180.02562 * 2 1 3 12 12 C 1.50701 * 119.67174 * 0.02562 * 11 2 1 13 13 C 1.52997 * 109.47368 * 84.99585 * 12 11 2 14 14 C 1.53006 * 109.47116 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.46881 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00309 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99557 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00121 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99798 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47414 * 59.99332 * 19 17 15 21 21 H 1.48497 * 109.46970 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46864 * 299.99603 * 19 17 15 23 23 H 1.08991 * 109.47298 * 89.99697 * 1 2 3 24 24 H 1.09006 * 109.46727 * 209.99894 * 1 2 3 25 25 H 1.09007 * 109.46807 * 329.99208 * 1 2 3 26 26 H 1.07998 * 125.03306 * 179.97438 * 6 4 3 27 27 H 1.08002 * 126.49782 * 179.97438 * 7 6 4 28 28 H 1.07991 * 120.11656 * 180.32168 * 9 8 3 29 29 H 1.08005 * 119.73286 * 179.72106 * 10 9 8 30 30 H 1.08997 * 109.47467 * 205.00124 * 12 11 2 31 31 H 1.09008 * 109.46430 * 324.99573 * 12 11 2 32 32 H 1.09000 * 109.47382 * 300.00146 * 13 12 11 33 33 H 1.08999 * 109.46911 * 60.00178 * 13 12 11 34 34 H 1.09000 * 109.46741 * 300.00081 * 14 13 12 35 35 H 1.08995 * 109.46743 * 60.00083 * 14 13 12 36 36 H 0.97005 * 119.99613 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2050 1.2036 0.0000 4 7 1.8166 2.5245 0.0004 5 1 0.8976 2.8352 0.0004 6 6 2.9199 3.3338 -0.0004 7 6 4.0353 2.5868 -0.0008 8 6 3.6115 1.1846 -0.0069 9 6 4.2917 -0.0349 -0.0011 10 6 3.5863 -1.2049 -0.0011 11 6 2.1980 -1.1915 -0.0005 12 6 1.4396 -2.4938 -0.0017 13 6 1.0747 -2.8702 -1.4390 14 6 0.3041 -4.1920 -1.4401 15 6 -0.0547 -4.5631 -2.8559 16 1 0.2372 -3.9203 -3.6732 17 6 -0.7566 -5.7228 -3.1078 18 7 -1.1126 -6.5053 -2.1125 19 14 -1.2008 -6.1832 -4.8628 20 1 0.0402 -6.3337 -5.6644 21 1 -1.9488 -7.4660 -4.8638 22 1 -2.0465 -5.1161 -5.4555 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8901 0.5139 25 1 -0.3633 0.8900 0.5140 26 1 2.8968 4.4135 -0.0006 27 1 5.0521 2.9507 -0.0018 28 1 5.3715 -0.0531 -0.0011 29 1 4.1129 -2.1479 -0.0012 30 1 2.0613 -3.2768 0.4323 31 1 0.5291 -2.3843 0.5876 32 1 0.4529 -2.0872 -1.8731 33 1 1.9852 -2.9795 -2.0282 34 1 0.9256 -4.9752 -1.0060 35 1 -0.6063 -4.0822 -0.8510 36 1 -1.6061 -7.3214 -2.2898 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259375721.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:08 Heat of formation + Delta-G solvation = 10.777725 kcal Electronic energy + Delta-G solvation = -16513.087856 eV Core-core repulsion = 13960.612734 eV Total energy + Delta-G solvation = -2552.475122 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.13180 -38.82046 -36.05751 -34.53602 -33.56637 -30.98699 -30.52984 -28.27030 -27.41821 -25.09099 -22.99647 -22.29329 -21.25568 -21.09680 -18.73292 -18.40145 -16.78168 -16.59940 -16.39599 -15.57730 -15.46777 -14.95824 -14.43477 -14.28070 -14.21380 -14.04528 -13.77934 -13.38622 -13.13667 -12.99892 -12.72399 -12.57144 -12.47581 -12.24224 -12.01519 -11.74377 -11.37647 -11.26756 -11.05750 -10.53592 -10.33111 -9.01132 -8.45419 -8.18391 -6.29821 0.25154 0.73618 1.39539 1.42738 1.50778 1.89117 2.33748 2.41719 2.96975 3.13871 3.82399 3.99095 4.05729 4.17866 4.25388 4.39915 4.49434 4.54209 4.71234 4.74270 4.79294 4.85487 4.95925 4.99373 5.07092 5.20689 5.26011 5.26281 5.39305 5.55129 5.67178 5.74306 5.81484 5.87635 5.90264 5.94656 6.27044 6.32994 6.78113 6.86596 7.39050 8.92764 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.039569 B = 0.004331 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.463431 B = 6462.740413 C = 6594.083926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.104 4.104 3 C 0.079 3.921 4 N -0.590 5.590 5 H 0.425 0.575 6 C 0.062 3.938 7 C -0.230 4.230 8 C -0.137 4.137 9 C -0.087 4.087 10 C -0.149 4.149 11 C -0.073 4.073 12 C -0.072 4.072 13 C -0.085 4.085 14 C 0.025 3.975 15 C -0.545 4.545 16 H 0.056 0.944 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 0.963 3.037 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.267 1.267 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.212 0.788 27 H 0.162 0.838 28 H 0.138 0.862 29 H 0.126 0.874 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.042 0.958 34 H -0.008 1.008 35 H -0.006 1.006 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.581 20.389 5.504 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.106 4.106 3 C -0.028 4.028 4 N -0.194 5.194 5 H 0.264 0.736 6 C -0.065 4.065 7 C -0.255 4.255 8 C -0.142 4.142 9 C -0.105 4.105 10 C -0.168 4.168 11 C -0.074 4.074 12 C -0.109 4.109 13 C -0.122 4.122 14 C -0.012 4.012 15 C -0.583 4.583 16 H 0.074 0.926 17 C -0.197 4.197 18 N -0.573 5.573 19 Si 0.787 3.213 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.192 1.192 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.229 0.771 27 H 0.180 0.820 28 H 0.156 0.844 29 H 0.144 0.856 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.010 0.990 35 H 0.013 0.987 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.371 20.315 5.547 22.311 hybrid contribution -0.718 -0.722 -0.743 1.261 sum 6.653 19.593 4.804 21.242 Atomic orbital electron populations 1.20756 0.90649 1.03113 1.02301 1.18848 0.96060 0.89844 1.05897 1.18147 0.94001 0.85437 1.05259 1.41851 1.09667 1.03167 1.64717 0.73586 1.22471 0.84510 0.97936 1.01539 1.21989 0.99740 0.89695 1.14025 1.19643 0.92441 0.95021 1.07119 1.20436 1.00175 0.90310 0.99591 1.20729 0.93307 0.98731 1.04077 1.19582 0.93983 0.93824 1.00045 1.20585 0.99412 0.93520 0.97387 1.21341 0.98743 0.97110 0.95037 1.19023 0.94121 0.92675 0.95391 1.21674 1.35428 1.06961 0.94234 0.92604 1.25957 0.95715 0.96313 1.01680 1.70089 1.40010 1.13904 1.33279 0.85535 0.78626 0.77617 0.79487 1.19306 1.20608 1.19186 0.91684 0.91329 0.90624 0.77149 0.82016 0.84411 0.85591 0.91609 0.91079 0.93430 0.93871 0.98970 0.98716 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.99 9.34 71.24 0.67 -2.33 16 2 C -0.10 -3.16 5.89 -19.77 -0.12 -3.28 16 3 C 0.08 2.17 6.95 39.03 0.27 2.44 16 4 N -0.59 -11.32 6.07 -187.61 -1.14 -12.46 16 5 H 0.43 5.72 8.87 -92.70 -0.82 4.89 16 6 C 0.06 0.96 11.82 83.00 0.98 1.94 16 7 C -0.23 -4.67 11.08 23.51 0.26 -4.41 16 8 C -0.14 -3.78 6.37 -20.20 -0.13 -3.91 16 9 C -0.09 -2.41 10.05 22.23 0.22 -2.19 16 10 C -0.15 -4.60 9.59 22.03 0.21 -4.39 16 11 C -0.07 -2.43 5.13 -19.84 -0.10 -2.53 16 12 C -0.07 -2.63 4.82 29.85 0.14 -2.49 16 13 C -0.08 -3.71 5.14 30.60 0.16 -3.55 16 14 C 0.02 1.36 4.97 29.85 0.15 1.51 16 15 C -0.55 -32.07 9.11 25.60 0.23 -31.84 16 16 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 17 C 0.00 0.06 5.46 84.66 0.46 0.52 16 18 N -0.93 -57.73 13.29 21.45 0.28 -57.44 16 19 Si 0.96 45.12 29.54 68.60 2.03 47.15 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 23 H 0.06 1.80 8.12 -2.39 -0.02 1.78 16 24 H 0.07 1.96 6.00 -2.38 -0.01 1.94 16 25 H 0.07 1.56 7.99 -2.38 -0.02 1.54 16 26 H 0.21 1.25 8.06 -2.91 -0.02 1.23 16 27 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 28 H 0.14 3.08 8.06 -2.92 -0.02 3.06 16 29 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 30 H 0.07 2.37 8.04 -2.39 -0.02 2.36 16 31 H 0.07 2.53 6.13 -2.38 -0.01 2.52 16 32 H 0.05 2.05 7.86 -2.39 -0.02 2.03 16 33 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 34 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 35 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 36 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -70.68 301.67 4.83 -65.85 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.25 Total: 11.40 kcal Atomic # 6 Polarization: -57.91 SS G_CDS: 3.41 Total: -54.50 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -0.85 Total: -69.90 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -70.68 4.83 -65.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259375721.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.623 kcal (2) G-P(sol) polarization free energy of solvation -70.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds