Wall clock time and date at job start Mon Mar 30 2020 05:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36668 * 119.73695 * 2 1 4 4 C 1.39587 * 119.76267 * 179.97438 * 3 2 1 5 5 C 1.46497 * 134.03357 * 180.02562 * 4 3 2 6 6 C 1.34236 * 106.99807 * 180.02562 * 5 4 3 7 7 N 1.36837 * 109.93711 * 0.26679 * 6 5 4 8 8 H 0.96996 * 125.05534 * 179.73509 * 7 6 5 9 9 C 1.37689 * 109.87393 * 359.55777 * 7 6 5 10 10 C 1.39087 * 133.51283 * 180.12070 * 9 7 6 11 11 C 1.37788 * 119.77805 * 180.33975 * 10 9 7 12 12 C 1.50704 * 119.66341 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47121 * 265.00002 * 12 11 10 14 14 C 1.53005 * 109.47196 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46937 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00516 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99346 * 179.97438 * 15 14 13 18 18 N 1.31505 * 120.00160 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99623 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47001 * 359.97438 * 19 17 15 21 21 H 1.48490 * 109.47018 * 120.00272 * 19 17 15 22 22 H 1.48496 * 109.47053 * 240.00492 * 19 17 15 23 23 H 1.09004 * 109.47198 * 270.00487 * 1 2 3 24 24 H 1.08997 * 109.47561 * 29.99947 * 1 2 3 25 25 H 1.08995 * 109.47497 * 149.99974 * 1 2 3 26 26 H 1.07999 * 120.11551 * 0.02562 * 3 2 1 27 27 H 1.08002 * 126.49760 * 359.97438 * 5 4 3 28 28 H 1.08002 * 125.02686 * 179.97438 * 6 5 4 29 29 H 1.08001 * 120.10882 * 0.36209 * 10 9 7 30 30 H 1.09000 * 109.47103 * 25.00289 * 12 11 10 31 31 H 1.08999 * 109.46602 * 144.99695 * 12 11 10 32 32 H 1.09004 * 109.46688 * 299.99956 * 13 12 11 33 33 H 1.08989 * 109.47235 * 59.99978 * 13 12 11 34 34 H 1.09000 * 109.46824 * 300.00162 * 14 13 12 35 35 H 1.08999 * 109.46807 * 59.99523 * 14 13 12 36 36 H 0.97006 * 119.99691 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1848 1.1867 0.0000 4 6 3.5807 1.1873 0.0005 5 6 4.5985 2.2410 0.0012 6 6 5.7945 1.6314 0.0009 7 7 5.6260 0.2734 -0.0058 8 1 6.3453 -0.3772 -0.0110 9 6 4.2833 -0.0317 -0.0002 10 6 3.5730 -1.2275 -0.0009 11 6 2.1953 -1.2051 -0.0010 12 6 1.4283 -2.5023 -0.0024 13 6 1.0606 -2.8759 -1.4398 14 6 0.2813 -4.1926 -1.4411 15 6 -0.0813 -4.5602 -2.8569 16 1 0.2147 -3.9191 -3.6740 17 6 -0.7903 -5.7156 -3.1090 18 7 -1.1504 -6.4964 -2.1140 19 14 -1.2392 -6.1716 -4.8640 20 1 -0.7218 -5.1348 -5.7927 21 1 -0.6371 -7.4859 -5.2033 22 1 -2.7163 -6.2563 -4.9910 23 1 -0.3634 0.0001 1.0277 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3634 -0.8899 -0.5138 26 1 1.6424 2.1206 0.0004 27 1 4.4203 3.3062 0.0010 28 1 6.7484 2.1378 0.0009 29 1 4.0996 -2.1704 -0.0010 30 1 2.0450 -3.2895 0.4313 31 1 0.5187 -2.3871 0.5872 32 1 0.4438 -2.0886 -1.8733 33 1 1.9701 -2.9910 -2.0292 34 1 0.8977 -4.9800 -1.0073 35 1 -0.6282 -4.0770 -0.8517 36 1 -1.6495 -7.3091 -2.2914 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259502008.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:59 Heat of formation + Delta-G solvation = 27.182431 kcal Electronic energy + Delta-G solvation = -16429.716652 eV Core-core repulsion = 13877.952891 eV Total energy + Delta-G solvation = -2551.763760 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.10211 -37.89005 -34.30270 -32.50165 -31.75672 -30.83148 -29.09461 -26.47192 -25.98223 -23.48236 -21.93783 -20.61705 -20.26595 -19.77184 -17.87980 -16.26623 -15.56653 -15.09268 -14.51521 -14.37362 -14.24242 -13.58049 -13.53993 -13.17759 -12.97088 -12.59079 -12.20176 -11.91692 -11.76920 -11.40759 -11.05732 -10.97598 -10.80859 -10.61497 -10.44847 -10.34654 -9.60131 -9.56440 -9.22867 -9.00478 -8.30927 -7.78765 -7.52951 -5.96032 -3.97805 1.31480 1.81864 2.78647 3.18886 3.33478 3.40892 3.45664 4.06674 4.49791 4.78221 4.92177 5.19229 5.25608 5.39759 5.42760 5.53575 5.60807 5.80126 5.91453 5.94825 5.98734 6.11432 6.17088 6.23046 6.34144 6.51537 6.61277 6.78188 6.86309 6.87713 7.00262 7.11419 7.19881 7.37349 7.57439 7.73898 7.88547 8.05271 8.48566 9.09884 9.66113 11.15291 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.036736 B = 0.004321 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.016602 B = 6479.172234 C = 6717.113465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.102 4.102 3 C -0.077 4.077 4 C -0.118 4.118 5 C -0.206 4.206 6 C 0.040 3.960 7 N -0.600 5.600 8 H 0.413 0.587 9 C 0.093 3.907 10 C -0.133 4.133 11 C -0.041 4.041 12 C -0.084 4.084 13 C -0.103 4.103 14 C 0.020 3.980 15 C -0.518 4.518 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.118 0.882 27 H 0.142 0.858 28 H 0.165 0.835 29 H 0.119 0.881 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.015 0.985 35 H 0.016 0.984 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.335 15.548 6.209 20.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.103 4.103 3 C -0.096 4.096 4 C -0.122 4.122 5 C -0.232 4.232 6 C -0.086 4.086 7 N -0.203 5.203 8 H 0.249 0.751 9 C -0.013 4.013 10 C -0.153 4.153 11 C -0.042 4.042 12 C -0.121 4.121 13 C -0.140 4.140 14 C -0.017 4.017 15 C -0.556 4.556 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.136 0.864 27 H 0.159 0.841 28 H 0.183 0.817 29 H 0.137 0.863 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.033 0.967 35 H 0.034 0.966 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.352 15.332 6.239 20.072 hybrid contribution 0.233 -0.603 -0.974 1.170 sum 11.586 14.729 5.264 19.465 Atomic orbital electron populations 1.20859 0.91186 1.03345 1.01999 1.19306 0.96123 0.92141 1.02773 1.20067 0.91570 0.97439 1.00477 1.19132 0.93240 0.92323 1.07537 1.21643 0.90865 0.98062 1.12634 1.21711 0.99436 0.82456 1.04974 1.41758 1.05845 1.06816 1.65875 0.75126 1.18246 0.83251 0.95424 1.04361 1.19898 0.93318 0.94741 1.07365 1.19708 0.92283 0.95469 0.96726 1.20793 0.99038 0.92280 1.00003 1.21633 0.99943 1.00012 0.92441 1.19132 0.94878 0.90797 0.96898 1.21322 1.34494 1.06674 0.93134 0.92693 1.25020 0.96059 0.96501 0.96902 1.69975 1.39269 1.13674 1.30685 0.86571 0.78125 0.78324 0.85213 1.19751 1.21072 1.21025 0.91723 0.92134 0.90144 0.86449 0.84071 0.81745 0.86334 0.91659 0.91031 0.93062 0.93451 0.96674 0.96550 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 9.18 36.00 0.33 -1.30 16 2 C -0.10 -1.58 5.84 -104.99 -0.61 -2.19 16 3 C -0.08 -1.11 9.67 -39.65 -0.38 -1.49 16 4 C -0.12 -1.72 6.37 -105.14 -0.67 -2.39 16 5 C -0.21 -2.42 11.08 -37.67 -0.42 -2.84 16 6 C 0.04 0.40 11.81 -16.73 -0.20 0.20 16 7 N -0.60 -6.59 6.07 -10.65 -0.06 -6.65 16 8 H 0.41 3.30 8.96 -40.82 -0.37 2.93 16 9 C 0.09 1.35 7.28 -83.99 -0.61 0.74 16 10 C -0.13 -2.04 9.69 -39.43 -0.38 -2.42 16 11 C -0.04 -0.66 5.13 -104.58 -0.54 -1.20 16 12 C -0.08 -1.48 4.63 -27.88 -0.13 -1.61 16 13 C -0.10 -2.17 4.93 -26.73 -0.13 -2.30 16 14 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 15 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 16 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 19 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.74 8.07 -51.93 -0.42 0.32 16 25 H 0.08 1.25 5.36 -51.93 -0.28 0.97 16 26 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 27 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 28 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 29 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 30 H 0.06 1.12 8.04 -51.93 -0.42 0.71 16 31 H 0.07 1.23 6.95 -51.93 -0.36 0.87 16 32 H 0.05 1.07 6.89 -51.93 -0.36 0.72 16 33 H 0.05 1.01 8.14 -51.94 -0.42 0.59 16 34 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 300.51 15.07 4.53 4.53 Total: -1.00 -32.41 300.51 -9.24 -41.65 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -5.12 Total: 0.14 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: -4.29 Total: -30.11 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.67 Total: -33.12 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.41 -9.24 -41.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259502008.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.832 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds