Wall clock time and date at job start Mon Mar 30 2020 05:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36668 * 119.73695 * 2 1 4 4 C 1.39587 * 119.76267 * 179.97438 * 3 2 1 5 5 C 1.46497 * 134.03357 * 180.02562 * 4 3 2 6 6 C 1.34236 * 106.99807 * 180.02562 * 5 4 3 7 7 N 1.36837 * 109.93711 * 0.26679 * 6 5 4 8 8 H 0.96996 * 125.05534 * 179.73509 * 7 6 5 9 9 C 1.37689 * 109.87393 * 359.55777 * 7 6 5 10 10 C 1.39087 * 133.51283 * 180.12070 * 9 7 6 11 11 C 1.37788 * 119.77805 * 180.33975 * 10 9 7 12 12 C 1.50704 * 119.66341 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47121 * 265.00002 * 12 11 10 14 14 C 1.53005 * 109.47196 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46937 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00516 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99346 * 179.97438 * 15 14 13 18 18 N 1.31505 * 120.00160 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99623 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47001 * 359.97438 * 19 17 15 21 21 H 1.48490 * 109.47018 * 120.00272 * 19 17 15 22 22 H 1.48496 * 109.47053 * 240.00492 * 19 17 15 23 23 H 1.09004 * 109.47198 * 270.00487 * 1 2 3 24 24 H 1.08997 * 109.47561 * 29.99947 * 1 2 3 25 25 H 1.08995 * 109.47497 * 149.99974 * 1 2 3 26 26 H 1.07999 * 120.11551 * 0.02562 * 3 2 1 27 27 H 1.08002 * 126.49760 * 359.97438 * 5 4 3 28 28 H 1.08002 * 125.02686 * 179.97438 * 6 5 4 29 29 H 1.08001 * 120.10882 * 0.36209 * 10 9 7 30 30 H 1.09000 * 109.47103 * 25.00289 * 12 11 10 31 31 H 1.08999 * 109.46602 * 144.99695 * 12 11 10 32 32 H 1.09004 * 109.46688 * 299.99956 * 13 12 11 33 33 H 1.08989 * 109.47235 * 59.99978 * 13 12 11 34 34 H 1.09000 * 109.46824 * 300.00162 * 14 13 12 35 35 H 1.08999 * 109.46807 * 59.99523 * 14 13 12 36 36 H 0.97006 * 119.99691 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1848 1.1867 0.0000 4 6 3.5807 1.1873 0.0005 5 6 4.5985 2.2410 0.0012 6 6 5.7945 1.6314 0.0009 7 7 5.6260 0.2734 -0.0058 8 1 6.3453 -0.3772 -0.0110 9 6 4.2833 -0.0317 -0.0002 10 6 3.5730 -1.2275 -0.0009 11 6 2.1953 -1.2051 -0.0010 12 6 1.4283 -2.5023 -0.0024 13 6 1.0606 -2.8759 -1.4398 14 6 0.2813 -4.1926 -1.4411 15 6 -0.0813 -4.5602 -2.8569 16 1 0.2147 -3.9191 -3.6740 17 6 -0.7903 -5.7156 -3.1090 18 7 -1.1504 -6.4964 -2.1140 19 14 -1.2392 -6.1716 -4.8640 20 1 -0.7218 -5.1348 -5.7927 21 1 -0.6371 -7.4859 -5.2033 22 1 -2.7163 -6.2563 -4.9910 23 1 -0.3634 0.0001 1.0277 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3634 -0.8899 -0.5138 26 1 1.6424 2.1206 0.0004 27 1 4.4203 3.3062 0.0010 28 1 6.7484 2.1378 0.0009 29 1 4.0996 -2.1704 -0.0010 30 1 2.0450 -3.2895 0.4313 31 1 0.5187 -2.3871 0.5872 32 1 0.4438 -2.0886 -1.8733 33 1 1.9701 -2.9910 -2.0292 34 1 0.8977 -4.9800 -1.0073 35 1 -0.6282 -4.0770 -0.8517 36 1 -1.6495 -7.3091 -2.2914 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259502008.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:59 Heat of formation + Delta-G solvation = 9.662752 kcal Electronic energy + Delta-G solvation = -16430.476362 eV Core-core repulsion = 13877.952891 eV Total energy + Delta-G solvation = -2552.523471 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.07356 -39.03374 -36.09964 -34.27942 -32.94873 -32.01904 -30.49527 -27.98273 -27.16726 -25.20976 -23.14872 -22.15059 -21.31185 -21.04363 -18.88504 -18.40615 -16.75899 -16.46231 -16.32912 -15.48725 -15.42331 -14.90219 -14.63480 -14.45332 -14.28852 -13.93336 -13.79041 -13.33857 -13.12434 -12.89883 -12.67128 -12.60353 -12.46764 -12.18685 -11.84024 -11.72774 -11.40695 -11.25784 -11.06309 -10.54672 -10.51844 -8.88313 -8.51931 -8.18894 -6.30033 0.25653 0.70015 1.39724 1.39969 1.53616 1.89711 2.33931 2.41639 2.94649 3.13657 3.81007 3.98246 4.04594 4.22994 4.30329 4.47732 4.53295 4.59331 4.66887 4.72643 4.86529 4.90009 4.98278 5.04289 5.08782 5.20809 5.23548 5.30169 5.35571 5.55507 5.60736 5.77145 5.82312 5.89123 5.90324 5.95356 6.26703 6.32220 6.78652 6.86776 7.38999 8.92748 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.036736 B = 0.004321 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.016602 B = 6479.172234 C = 6717.113465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.116 4.116 3 C -0.084 4.084 4 C -0.135 4.135 5 C -0.231 4.231 6 C 0.062 3.938 7 N -0.593 5.593 8 H 0.426 0.574 9 C 0.072 3.928 10 C -0.138 4.138 11 C -0.066 4.066 12 C -0.071 4.071 13 C -0.086 4.086 14 C 0.024 3.976 15 C -0.543 4.543 16 H 0.056 0.944 17 C 0.000 4.000 18 N -0.933 5.933 19 Si 0.964 3.036 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.276 1.276 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.058 0.942 26 H 0.137 0.863 27 H 0.162 0.838 28 H 0.212 0.788 29 H 0.123 0.877 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.042 0.958 34 H -0.008 1.008 35 H -0.005 1.005 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.822 17.303 5.501 22.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.117 4.117 3 C -0.102 4.102 4 C -0.140 4.140 5 C -0.256 4.256 6 C -0.064 4.064 7 N -0.197 5.197 8 H 0.265 0.735 9 C -0.035 4.035 10 C -0.159 4.159 11 C -0.067 4.067 12 C -0.108 4.108 13 C -0.124 4.124 14 C -0.013 4.013 15 C -0.581 4.581 16 H 0.074 0.926 17 C -0.197 4.197 18 N -0.573 5.573 19 Si 0.788 3.212 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.202 1.202 23 H 0.094 0.906 24 H 0.095 0.905 25 H 0.076 0.924 26 H 0.155 0.845 27 H 0.180 0.820 28 H 0.229 0.771 29 H 0.141 0.859 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.010 0.990 35 H 0.014 0.986 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.861 17.089 5.536 22.093 hybrid contribution -0.122 -1.091 -0.709 1.307 sum 12.739 15.998 4.826 21.012 Atomic orbital electron populations 1.20834 0.90605 1.02997 1.02634 1.19466 0.96727 0.92261 1.03232 1.20306 0.92050 0.97782 1.00071 1.19622 0.93840 0.93566 1.06931 1.21992 0.90643 0.98802 1.14131 1.22477 1.00847 0.81631 1.01437 1.41882 1.05001 1.07935 1.64899 0.73476 1.18328 0.84952 0.95080 1.05136 1.19998 0.93206 0.95640 1.07031 1.19567 0.92795 0.94880 0.99447 1.20556 0.99362 0.93467 0.97432 1.21379 0.98761 0.97254 0.94971 1.19033 0.94149 0.92650 0.95437 1.21730 1.34947 1.07194 0.94232 0.92595 1.25959 0.95759 0.96317 1.01679 1.70100 1.39833 1.14195 1.33171 0.85421 0.78070 0.78228 0.79476 1.18827 1.20260 1.20164 0.90619 0.90488 0.92353 0.84506 0.82007 0.77141 0.85875 0.91784 0.91033 0.93108 0.93950 0.98990 0.98641 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.17 9.18 71.23 0.65 -2.51 16 2 C -0.12 -3.55 5.84 -20.10 -0.12 -3.67 16 3 C -0.08 -2.33 9.67 22.23 0.22 -2.12 16 4 C -0.13 -3.72 6.37 -20.20 -0.13 -3.84 16 5 C -0.23 -4.72 11.08 23.51 0.26 -4.46 16 6 C 0.06 0.98 11.81 83.00 0.98 1.96 16 7 N -0.59 -11.46 6.07 -187.61 -1.14 -12.60 16 8 H 0.43 5.67 8.96 -92.71 -0.83 4.84 16 9 C 0.07 1.99 7.28 39.03 0.28 2.28 16 10 C -0.14 -4.24 9.69 22.37 0.22 -4.02 16 11 C -0.07 -2.18 5.13 -19.84 -0.10 -2.28 16 12 C -0.07 -2.59 4.63 29.85 0.14 -2.46 16 13 C -0.09 -3.77 4.93 30.59 0.15 -3.62 16 14 C 0.02 1.33 4.97 29.85 0.15 1.47 16 15 C -0.54 -31.95 9.11 25.60 0.23 -31.72 16 16 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 17 C 0.00 0.03 5.46 84.66 0.46 0.49 16 18 N -0.93 -57.67 13.29 21.45 0.28 -57.38 16 19 Si 0.96 45.18 29.54 68.60 2.03 47.21 16 20 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 24 H 0.08 1.82 8.07 -2.39 -0.02 1.80 16 25 H 0.06 1.86 5.36 -2.39 -0.01 1.85 16 26 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 27 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 28 H 0.21 1.27 8.06 -2.91 -0.02 1.25 16 29 H 0.12 3.49 8.06 -2.91 -0.02 3.46 16 30 H 0.06 2.30 8.04 -2.39 -0.02 2.28 16 31 H 0.07 2.57 6.95 -2.39 -0.02 2.55 16 32 H 0.05 2.20 6.89 -2.38 -0.02 2.18 16 33 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 34 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 35 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 36 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 Total: -1.00 -70.68 300.51 4.81 -65.87 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.24 Total: 11.41 kcal Atomic # 6 Polarization: -57.90 SS G_CDS: 3.40 Total: -54.51 kcal Atomic # 7 Polarization: -69.13 SS G_CDS: -0.85 Total: -69.98 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -70.68 4.81 -65.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259502008.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.535 kcal (2) G-P(sol) polarization free energy of solvation -70.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds