Wall clock time and date at job start Mon Mar 30 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36660 * 120.11767 * 2 1 4 4 C 1.38795 * 120.52587 * 179.97438 * 3 2 1 5 5 C 1.37788 * 120.66713 * 359.97438 * 4 3 2 6 6 C 1.39080 * 119.77799 * 0.02562 * 5 4 3 7 7 C 1.39590 * 120.11783 * 179.97438 * 2 1 3 8 8 C 1.46495 * 134.03582 * 0.30520 * 7 2 1 9 9 C 1.34232 * 106.99741 * 180.10495 * 8 7 2 10 10 C 1.50703 * 125.02698 * 179.89688 * 9 8 7 11 11 H 1.09002 * 109.46982 * 154.69845 * 10 9 8 12 12 C 1.52999 * 109.47118 * 274.69600 * 10 9 8 13 13 C 1.50704 * 109.47405 * 34.69906 * 10 9 8 14 14 H 1.08001 * 119.99778 * 354.49040 * 13 10 9 15 15 C 1.37877 * 120.00082 * 174.49649 * 13 10 9 16 16 N 1.31513 * 119.99594 * 164.76397 * 15 13 10 17 17 Si 1.86804 * 120.00070 * 344.76551 * 15 13 10 18 18 H 1.48499 * 109.46846 * 270.00247 * 17 15 13 19 19 H 1.48496 * 109.46776 * 30.00174 * 17 15 13 20 20 H 1.48498 * 109.47120 * 150.00044 * 17 15 13 21 21 N 1.36830 * 109.94160 * 359.63030 * 9 8 7 22 22 C 1.46497 * 125.06264 * 180.20526 * 21 9 8 23 23 H 1.09005 * 109.47015 * 270.02128 * 1 2 3 24 24 H 1.08995 * 109.47059 * 30.01795 * 1 2 3 25 25 H 1.08994 * 109.47173 * 150.02104 * 1 2 3 26 26 H 1.07998 * 119.73473 * 359.97438 * 3 2 1 27 27 H 1.07999 * 119.66370 * 179.97438 * 4 3 2 28 28 H 1.07998 * 120.10542 * 180.02562 * 5 4 3 29 29 H 1.08004 * 126.50119 * 359.97438 * 8 7 2 30 30 H 1.08999 * 109.47039 * 53.61683 * 12 10 9 31 31 H 1.09008 * 109.47028 * 173.61810 * 12 10 9 32 32 H 1.09003 * 109.46951 * 293.61550 * 12 10 9 33 33 H 0.96992 * 120.00375 * 354.90139 * 16 15 13 34 34 H 1.08997 * 109.47136 * 90.00254 * 22 21 9 35 35 H 1.09005 * 109.47232 * 210.00246 * 22 21 9 36 36 H 1.08998 * 109.47294 * 330.00025 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.1821 0.0000 4 6 3.5807 1.1920 0.0005 5 6 4.2919 0.0119 0.0016 6 6 3.6145 -1.2028 0.0016 7 6 2.2075 -1.2074 0.0005 8 6 1.8074 -2.6167 -0.0044 9 6 2.9352 -3.3447 0.0015 10 6 2.9926 -4.8507 0.0015 11 1 3.9372 -5.1782 -0.4327 12 6 2.8862 -5.3651 1.4385 13 6 1.8488 -5.3970 -0.8137 14 1 1.1000 -4.7273 -1.2102 15 6 1.7582 -6.7519 -1.0530 16 7 0.6317 -7.2678 -1.4938 17 14 3.2356 -7.8545 -0.7511 18 1 4.0494 -7.9418 -1.9902 19 1 4.0614 -7.2866 0.3446 20 1 2.7702 -9.2116 -0.3679 21 7 4.0249 -2.5172 0.0016 22 6 5.4203 -2.9632 0.0029 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8898 -0.5141 25 1 -0.3633 -0.8901 -0.5135 26 1 1.6503 2.1160 -0.0004 27 1 4.1085 2.1342 0.0001 28 1 5.3717 0.0301 0.0024 29 1 0.7968 -2.9977 -0.0096 30 1 1.9978 -4.9450 1.9099 31 1 2.8136 -6.4527 1.4306 32 1 3.7716 -5.0641 1.9986 33 1 -0.1565 -6.7092 -1.5803 34 1 5.7671 -3.0746 -1.0244 35 1 6.0370 -2.2256 0.5166 36 1 5.4951 -3.9211 0.5176 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259513817.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:18 Heat of formation + Delta-G solvation = 44.769915 kcal Electronic energy + Delta-G solvation = -17260.321056 eV Core-core repulsion = 14709.319946 eV Total energy + Delta-G solvation = -2551.001110 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.87593 -37.18568 -34.35497 -32.76258 -31.32683 -31.23425 -28.04665 -26.15178 -25.77672 -24.69099 -22.37601 -21.20670 -19.86311 -18.65759 -17.24260 -16.33783 -15.83936 -15.00071 -14.76798 -14.03955 -13.67083 -13.47224 -13.32572 -12.89069 -12.65438 -12.39933 -12.30132 -11.97494 -11.87775 -11.83807 -11.41912 -11.13621 -10.82121 -10.60258 -10.45916 -10.41381 -9.95579 -9.68528 -8.94535 -8.88123 -8.35309 -7.56648 -6.96150 -6.48154 -4.12468 1.56972 2.04487 3.34092 3.34632 3.36681 3.45441 3.51953 4.29751 4.44625 5.03783 5.09721 5.22123 5.23281 5.40495 5.47102 5.53461 5.60515 5.69579 5.76975 5.92181 6.06045 6.08095 6.11947 6.28178 6.35882 6.52785 6.60609 6.63934 6.69285 6.82049 6.94719 7.07141 7.23063 7.32820 7.54236 7.73308 7.92028 8.13151 8.35921 8.86180 9.55288 10.89474 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.030941 B = 0.007070 C = 0.006071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.743721 B = 3959.660775 C = 4611.053245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.043 4.043 3 C -0.159 4.159 4 C -0.113 4.113 5 C -0.135 4.135 6 C 0.089 3.911 7 C -0.100 4.100 8 C -0.205 4.205 9 C 0.135 3.865 10 C 0.071 3.929 11 H 0.028 0.972 12 C -0.136 4.136 13 C -0.591 4.591 14 H 0.067 0.933 15 C 0.034 3.966 16 N -0.904 5.904 17 Si 1.040 2.960 18 H -0.286 1.286 19 H -0.272 1.272 20 H -0.285 1.285 21 N -0.491 5.491 22 C 0.080 3.920 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.113 0.887 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.143 0.857 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.021 0.979 33 H 0.270 0.730 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.850 12.099 4.407 14.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.044 4.044 3 C -0.179 4.179 4 C -0.132 4.132 5 C -0.156 4.156 6 C -0.017 4.017 7 C -0.105 4.105 8 C -0.228 4.228 9 C 0.029 3.971 10 C 0.051 3.949 11 H 0.046 0.954 12 C -0.194 4.194 13 C -0.629 4.629 14 H 0.085 0.915 15 C -0.172 4.172 16 N -0.537 5.537 17 Si 0.868 3.132 18 H -0.213 1.213 19 H -0.198 1.198 20 H -0.211 1.211 21 N -0.175 5.175 22 C -0.062 4.062 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.131 0.869 27 H 0.134 0.866 28 H 0.128 0.872 29 H 0.161 0.839 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.693 10.380 4.264 13.605 hybrid contribution -0.389 1.595 0.042 1.642 sum 7.304 11.974 4.305 14.672 Atomic orbital electron populations 1.20713 0.91712 1.02388 1.01893 1.19028 0.95365 0.91290 0.98715 1.20345 0.93996 0.96779 1.06756 1.20567 0.93984 0.96429 1.02228 1.19868 0.98453 0.89779 1.07494 1.18229 0.93787 0.84813 1.04856 1.19216 0.91857 0.93678 1.05746 1.21348 0.98222 0.88921 1.14359 1.21068 0.84548 0.93870 0.97630 1.17942 0.98900 0.83654 0.94422 0.95374 1.22161 0.99041 1.00954 0.97250 1.21965 1.10007 0.94533 1.36443 0.91529 1.25713 1.01517 0.96209 0.93718 1.70788 1.00774 1.38938 1.43246 0.84164 0.75894 0.76204 0.76955 1.21331 1.19760 1.21052 1.43953 1.06030 1.03757 1.63764 1.21818 0.80409 1.01350 1.02589 0.91561 0.92138 0.91349 0.86871 0.86617 0.87205 0.83906 0.93177 0.92594 0.96022 0.91991 0.91720 0.90908 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 9.95 36.01 0.36 -1.22 16 2 C -0.04 -0.74 5.87 -104.69 -0.61 -1.35 16 3 C -0.16 -2.37 9.62 -39.95 -0.38 -2.75 16 4 C -0.11 -1.61 10.01 -39.54 -0.40 -2.01 16 5 C -0.14 -2.12 9.96 -39.43 -0.39 -2.52 16 6 C 0.09 1.68 6.81 -83.99 -0.57 1.11 16 7 C -0.10 -1.98 6.14 -105.14 -0.65 -2.62 16 8 C -0.21 -4.50 9.61 -37.67 -0.36 -4.86 16 9 C 0.13 2.95 5.77 -81.77 -0.47 2.48 16 10 C 0.07 1.64 1.79 -92.92 -0.17 1.48 16 11 H 0.03 0.64 5.97 -51.93 -0.31 0.33 16 12 C -0.14 -2.91 8.46 37.16 0.31 -2.60 16 13 C -0.59 -16.09 8.55 -34.44 -0.29 -16.39 16 14 H 0.07 1.96 6.83 -52.49 -0.36 1.60 16 15 C 0.03 0.94 5.33 -17.82 -0.09 0.84 16 16 N -0.90 -27.10 13.70 55.43 0.76 -26.34 16 17 Si 1.04 24.12 26.17 -169.99 -4.45 19.67 16 18 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.27 -5.67 5.53 56.52 0.31 -5.36 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 N -0.49 -9.39 3.18 -117.20 -0.37 -9.76 16 22 C 0.08 1.18 10.56 59.85 0.63 1.81 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 25 H 0.07 1.04 7.90 -51.93 -0.41 0.63 16 26 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 27 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 29 H 0.14 3.21 7.45 -52.48 -0.39 2.82 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 1.21 5.06 -51.92 -0.26 0.95 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.27 8.08 8.73 -40.82 -0.36 7.72 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 36 H 0.08 1.17 7.40 -51.93 -0.38 0.79 16 LS Contribution 293.50 15.07 4.42 4.42 Total: -1.00 -30.46 293.50 -7.89 -38.34 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.16 Total: 2.27 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: -3.09 Total: -28.61 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.39 Total: -36.10 kcal Atomic # 14 Polarization: 24.12 SS G_CDS: -4.45 Total: 19.67 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.46 -7.89 -38.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259513817.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.114 kcal (2) G-P(sol) polarization free energy of solvation -30.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds