Wall clock time and date at job start Mon Mar 30 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36660 * 120.11767 * 2 1 4 4 C 1.38795 * 120.52587 * 179.97438 * 3 2 1 5 5 C 1.37788 * 120.66713 * 359.97438 * 4 3 2 6 6 C 1.39080 * 119.77799 * 0.02562 * 5 4 3 7 7 C 1.39590 * 120.11783 * 179.97438 * 2 1 3 8 8 C 1.46495 * 134.03582 * 0.30520 * 7 2 1 9 9 C 1.34232 * 106.99741 * 180.10495 * 8 7 2 10 10 C 1.50703 * 125.02698 * 179.89688 * 9 8 7 11 11 H 1.09002 * 109.46982 * 154.69845 * 10 9 8 12 12 C 1.52999 * 109.47118 * 274.69600 * 10 9 8 13 13 C 1.50704 * 109.47405 * 34.69906 * 10 9 8 14 14 H 1.08001 * 119.99778 * 354.49040 * 13 10 9 15 15 C 1.37877 * 120.00082 * 174.49649 * 13 10 9 16 16 N 1.31513 * 119.99594 * 164.76397 * 15 13 10 17 17 Si 1.86804 * 120.00070 * 344.76551 * 15 13 10 18 18 H 1.48499 * 109.46846 * 270.00247 * 17 15 13 19 19 H 1.48496 * 109.46776 * 30.00174 * 17 15 13 20 20 H 1.48498 * 109.47120 * 150.00044 * 17 15 13 21 21 N 1.36830 * 109.94160 * 359.63030 * 9 8 7 22 22 C 1.46497 * 125.06264 * 180.20526 * 21 9 8 23 23 H 1.09005 * 109.47015 * 270.02128 * 1 2 3 24 24 H 1.08995 * 109.47059 * 30.01795 * 1 2 3 25 25 H 1.08994 * 109.47173 * 150.02104 * 1 2 3 26 26 H 1.07998 * 119.73473 * 359.97438 * 3 2 1 27 27 H 1.07999 * 119.66370 * 179.97438 * 4 3 2 28 28 H 1.07998 * 120.10542 * 180.02562 * 5 4 3 29 29 H 1.08004 * 126.50119 * 359.97438 * 8 7 2 30 30 H 1.08999 * 109.47039 * 53.61683 * 12 10 9 31 31 H 1.09008 * 109.47028 * 173.61810 * 12 10 9 32 32 H 1.09003 * 109.46951 * 293.61550 * 12 10 9 33 33 H 0.96992 * 120.00375 * 354.90139 * 16 15 13 34 34 H 1.08997 * 109.47136 * 90.00254 * 22 21 9 35 35 H 1.09005 * 109.47232 * 210.00246 * 22 21 9 36 36 H 1.08998 * 109.47294 * 330.00025 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.1821 0.0000 4 6 3.5807 1.1920 0.0005 5 6 4.2919 0.0119 0.0016 6 6 3.6145 -1.2028 0.0016 7 6 2.2075 -1.2074 0.0005 8 6 1.8074 -2.6167 -0.0044 9 6 2.9352 -3.3447 0.0015 10 6 2.9926 -4.8507 0.0015 11 1 3.9372 -5.1782 -0.4327 12 6 2.8862 -5.3651 1.4385 13 6 1.8488 -5.3970 -0.8137 14 1 1.1000 -4.7273 -1.2102 15 6 1.7582 -6.7519 -1.0530 16 7 0.6317 -7.2678 -1.4938 17 14 3.2356 -7.8545 -0.7511 18 1 4.0494 -7.9418 -1.9902 19 1 4.0614 -7.2866 0.3446 20 1 2.7702 -9.2116 -0.3679 21 7 4.0249 -2.5172 0.0016 22 6 5.4203 -2.9632 0.0029 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8898 -0.5141 25 1 -0.3633 -0.8901 -0.5135 26 1 1.6503 2.1160 -0.0004 27 1 4.1085 2.1342 0.0001 28 1 5.3717 0.0301 0.0024 29 1 0.7968 -2.9977 -0.0096 30 1 1.9978 -4.9450 1.9099 31 1 2.8136 -6.4527 1.4306 32 1 3.7716 -5.0641 1.9986 33 1 -0.1565 -6.7092 -1.5803 34 1 5.7671 -3.0746 -1.0244 35 1 6.0370 -2.2256 0.5166 36 1 5.4951 -3.9211 0.5176 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259513817.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:18 Heat of formation + Delta-G solvation = 27.946589 kcal Electronic energy + Delta-G solvation = -17261.050570 eV Core-core repulsion = 14709.319946 eV Total energy + Delta-G solvation = -2551.730624 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.27172 -38.51317 -36.18603 -34.15194 -33.25201 -32.49386 -29.42865 -27.41626 -27.09985 -26.62712 -24.03592 -22.54479 -21.30078 -20.31595 -19.18657 -17.69958 -17.26058 -16.36531 -16.12891 -15.56773 -15.24030 -14.83192 -14.57779 -14.48070 -14.28720 -14.01454 -13.68958 -13.39007 -13.19430 -13.12929 -13.06801 -12.58799 -12.40958 -12.31623 -11.86573 -11.74798 -11.59722 -11.41929 -10.96387 -10.50516 -10.28649 -8.95663 -8.73922 -8.34992 -6.37199 0.27351 0.77960 1.47835 1.53373 1.70736 1.87998 2.00707 2.51431 3.01087 3.07292 3.80487 3.91794 3.99585 4.15248 4.27556 4.38365 4.45348 4.46264 4.55875 4.65732 4.66894 4.77924 4.79392 4.82822 4.90173 4.95403 5.04281 5.15635 5.26846 5.34482 5.50008 5.63249 5.79640 5.81440 5.98779 6.04412 6.17281 6.44090 6.54588 6.58527 7.40430 8.63474 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.030941 B = 0.007070 C = 0.006071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.743721 B = 3959.660775 C = 4611.053245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.064 4.064 3 C -0.155 4.155 4 C -0.101 4.101 5 C -0.139 4.139 6 C 0.075 3.925 7 C -0.136 4.136 8 C -0.232 4.232 9 C 0.114 3.886 10 C 0.073 3.927 11 H 0.042 0.958 12 C -0.132 4.132 13 C -0.592 4.592 14 H 0.022 0.978 15 C -0.019 4.019 16 N -0.939 5.939 17 Si 1.081 2.919 18 H -0.275 1.275 19 H -0.229 1.229 20 H -0.287 1.287 21 N -0.492 5.492 22 C 0.070 3.930 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.043 0.957 26 H 0.147 0.853 27 H 0.159 0.841 28 H 0.142 0.858 29 H 0.111 0.889 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.252 0.748 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.251 14.430 5.423 18.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.065 4.065 3 C -0.174 4.174 4 C -0.119 4.119 5 C -0.160 4.160 6 C -0.031 4.031 7 C -0.141 4.141 8 C -0.257 4.257 9 C 0.006 3.994 10 C 0.053 3.947 11 H 0.060 0.940 12 C -0.189 4.189 13 C -0.630 4.630 14 H 0.040 0.960 15 C -0.216 4.216 16 N -0.575 5.575 17 Si 0.901 3.099 18 H -0.201 1.201 19 H -0.153 1.153 20 H -0.213 1.213 21 N -0.176 5.176 22 C -0.070 4.070 23 H 0.093 0.907 24 H 0.106 0.894 25 H 0.062 0.938 26 H 0.164 0.836 27 H 0.176 0.824 28 H 0.159 0.841 29 H 0.130 0.870 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.124 0.876 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.113 12.752 5.288 17.722 hybrid contribution -1.529 1.094 -0.305 1.904 sum 9.585 13.846 4.982 17.561 Atomic orbital electron populations 1.20723 0.90747 1.02510 1.02490 1.19401 0.96531 0.91328 0.99194 1.20796 0.94803 0.97025 1.04737 1.21136 0.93864 0.97695 0.99244 1.20297 1.00181 0.88704 1.06774 1.18659 0.93559 0.85671 1.05198 1.19433 0.93318 0.93284 1.08028 1.21256 0.97230 0.91243 1.15953 1.20765 0.85858 0.93457 0.99291 1.17803 0.97277 0.84895 0.94723 0.94012 1.22055 1.00091 1.00591 0.96208 1.22120 1.10351 0.94188 1.36366 0.96001 1.27265 1.03283 0.98251 0.92847 1.70930 1.01299 1.38892 1.46334 0.83708 0.73133 0.74309 0.78767 1.20055 1.15258 1.21284 1.44054 1.06775 1.03520 1.63254 1.22161 0.78380 1.02671 1.03800 0.90725 0.89359 0.93808 0.83559 0.82381 0.84069 0.87047 0.94531 0.92755 0.92612 0.93964 0.90831 0.87624 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.11 9.95 71.24 0.71 -2.40 16 2 C -0.06 -2.13 5.87 -19.91 -0.12 -2.24 16 3 C -0.15 -4.05 9.62 22.03 0.21 -3.84 16 4 C -0.10 -2.39 10.01 22.30 0.22 -2.17 16 5 C -0.14 -3.82 9.96 22.37 0.22 -3.60 16 6 C 0.07 2.71 6.81 39.03 0.27 2.98 16 7 C -0.14 -5.48 6.14 -20.20 -0.12 -5.61 16 8 C -0.23 -10.90 9.61 23.51 0.23 -10.68 16 9 C 0.11 5.09 5.77 40.87 0.24 5.33 16 10 C 0.07 3.40 1.79 -12.28 -0.02 3.38 16 11 H 0.04 1.84 5.97 -2.39 -0.01 1.82 16 12 C -0.13 -5.52 8.46 71.98 0.61 -4.92 16 13 C -0.59 -33.89 8.55 25.60 0.22 -33.67 16 14 H 0.02 1.40 6.83 -2.91 -0.02 1.38 16 15 C -0.02 -1.10 5.33 84.65 0.45 -0.64 16 16 N -0.94 -59.17 13.70 21.45 0.29 -58.88 16 17 Si 1.08 48.10 26.17 68.60 1.80 49.89 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.23 -8.59 5.53 99.48 0.55 -8.04 16 20 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 21 N -0.49 -18.25 3.18 -524.70 -1.67 -19.92 16 22 C 0.07 1.84 10.56 127.77 1.35 3.19 16 23 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 24 H 0.09 1.99 8.08 -2.39 -0.02 1.97 16 25 H 0.04 1.44 7.90 -2.39 -0.02 1.42 16 26 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 27 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 28 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 29 H 0.11 5.68 7.45 -2.91 -0.02 5.65 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.05 2.26 5.06 -2.38 -0.01 2.25 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.25 16.24 8.73 -92.71 -0.81 15.43 16 34 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.11 2.04 8.10 -2.38 -0.02 2.02 16 36 H 0.09 2.19 7.40 -2.39 -0.02 2.17 16 Total: -1.00 -71.19 293.50 5.75 -65.44 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.86 Total: 18.36 kcal Atomic # 6 Polarization: -59.35 SS G_CDS: 4.46 Total: -54.89 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -1.37 Total: -78.80 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 1.80 Total: 49.89 kcal Total: -71.19 5.75 -65.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259513817.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.392 kcal (2) G-P(sol) polarization free energy of solvation -71.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds