Wall clock time and date at job start Mon Mar 30 2020 06:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37786 * 120.11229 * 2 1 4 4 C 1.38788 * 120.66673 * 180.02562 * 3 2 1 5 5 C 1.36658 * 120.52951 * 359.97438 * 4 3 2 6 6 C 1.39591 * 119.76454 * 359.97438 * 5 4 3 7 7 C 1.46498 * 134.03880 * 180.35295 * 6 5 4 8 8 C 1.34228 * 106.99870 * 180.10140 * 7 6 5 9 9 C 1.50698 * 125.03087 * 179.85951 * 8 7 6 10 10 H 1.09002 * 109.47502 * 154.69339 * 9 8 7 11 11 C 1.52999 * 109.47182 * 274.70105 * 9 8 7 12 12 C 1.50700 * 109.46835 * 34.69561 * 9 8 7 13 13 H 1.07998 * 120.00293 * 354.47118 * 12 9 8 14 14 C 1.37883 * 119.99786 * 174.47172 * 12 9 8 15 15 N 1.31515 * 119.99986 * 156.05489 * 14 12 9 16 16 Si 1.86796 * 120.00037 * 336.04598 * 14 12 9 17 17 H 1.48503 * 109.47144 * 180.02562 * 16 14 12 18 18 H 1.48505 * 109.47618 * 300.00385 * 16 14 12 19 19 H 1.48502 * 109.47196 * 60.00155 * 16 14 12 20 20 N 1.36834 * 109.94304 * 359.59550 * 8 7 6 21 21 C 1.46490 * 125.06786 * 180.24391 * 20 8 7 22 22 C 1.37693 * 109.87085 * 0.26724 * 20 8 7 23 23 H 1.09006 * 109.46801 * 261.94847 * 1 2 3 24 24 H 1.09002 * 109.47138 * 21.94430 * 1 2 3 25 25 H 1.08992 * 109.47278 * 141.94584 * 1 2 3 26 26 H 1.08001 * 119.66682 * 0.03313 * 3 2 1 27 27 H 1.08002 * 119.73535 * 179.97438 * 4 3 2 28 28 H 1.08001 * 120.11772 * 180.02562 * 5 4 3 29 29 H 1.07999 * 126.49639 * 359.97438 * 7 6 5 30 30 H 1.08997 * 109.47685 * 53.70899 * 11 9 8 31 31 H 1.09003 * 109.47351 * 173.72258 * 11 9 8 32 32 H 1.09003 * 109.46554 * 293.71083 * 11 9 8 33 33 H 0.97003 * 119.99834 * 354.94109 * 15 14 12 34 34 H 1.09002 * 109.47694 * 96.35345 * 21 20 8 35 35 H 1.09003 * 109.47735 * 216.35604 * 21 20 8 36 36 H 1.09004 * 109.46972 * 336.35489 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1919 0.0000 4 6 3.5861 1.2053 -0.0005 5 6 4.2917 0.0350 -0.0005 6 6 3.6117 -1.1841 0.0005 7 6 4.0353 -2.5865 0.0073 8 6 2.9201 -3.3334 0.0025 9 6 2.8879 -4.8400 0.0037 10 1 1.9492 -5.1831 0.4387 11 6 3.0023 -5.3537 -1.4329 12 6 4.0411 -5.3663 0.8187 13 1 4.7789 -4.6839 1.2140 14 6 4.1543 -6.7192 1.0595 15 7 5.3294 -7.2422 1.3339 16 14 2.6386 -7.8092 0.9963 17 1 3.0255 -9.2125 1.2899 18 1 1.6533 -7.3462 2.0063 19 1 2.0319 -7.7353 -0.3571 20 7 1.8165 -2.5243 0.0022 21 6 0.4288 -2.9936 0.0027 22 6 2.2047 -1.2032 0.0010 23 1 -0.3633 -0.1439 1.0176 24 1 -0.3633 0.9532 -0.3840 25 1 -0.3633 -0.8091 -0.6334 26 1 1.6547 2.1251 0.0005 27 1 4.1127 2.1483 -0.0009 28 1 5.3715 0.0532 -0.0005 29 1 5.0522 -2.9503 0.0129 30 1 3.8843 -4.9205 -1.9046 31 1 3.0913 -6.4401 -1.4244 32 1 2.1126 -5.0666 -1.9933 33 1 6.1266 -6.6910 1.2949 34 1 0.0482 -3.0018 1.0240 35 1 -0.1807 -2.3263 -0.6068 36 1 0.3862 -4.0020 -0.4090 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259529466.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:42 Heat of formation + Delta-G solvation = 49.226039 kcal Electronic energy + Delta-G solvation = -17317.350405 eV Core-core repulsion = 14766.542528 eV Total energy + Delta-G solvation = -2550.807878 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.93000 -37.09494 -34.27793 -33.37413 -31.34530 -30.77577 -27.84252 -27.21426 -25.04525 -24.73379 -22.40174 -21.26299 -19.92606 -18.72995 -17.22443 -16.37802 -15.76576 -15.08391 -14.75483 -14.15626 -13.68204 -13.46223 -13.20998 -12.98202 -12.74069 -12.59600 -12.47778 -12.07851 -11.92414 -11.73408 -11.39870 -10.94483 -10.82902 -10.55096 -10.50277 -10.41255 -9.91518 -9.87519 -9.04908 -8.95493 -8.22823 -7.53794 -6.96346 -6.51448 -4.10765 1.56518 2.04915 3.32366 3.34462 3.37639 3.43156 3.55386 4.30838 4.44881 4.95467 5.01064 5.14595 5.20308 5.31162 5.38681 5.46878 5.54242 5.59907 5.71286 5.82620 5.94334 6.05698 6.15515 6.26900 6.31932 6.52186 6.58844 6.63417 6.72195 6.85188 6.95793 7.02593 7.24831 7.32781 7.54094 7.74206 7.92287 8.15293 8.35698 8.87048 9.53597 10.84966 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.033518 B = 0.006908 C = 0.006057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.165580 B = 4052.139864 C = 4621.633748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.097 4.097 3 C -0.120 4.120 4 C -0.153 4.153 5 C -0.081 4.081 6 C -0.099 4.099 7 C -0.209 4.209 8 C 0.136 3.864 9 C 0.073 3.927 10 H 0.026 0.974 11 C -0.138 4.138 12 C -0.601 4.601 13 H 0.067 0.933 14 C 0.040 3.960 15 N -0.893 5.893 16 Si 1.033 2.967 17 H -0.283 1.283 18 H -0.284 1.284 19 H -0.277 1.277 20 N -0.488 5.488 21 C 0.071 3.929 22 C 0.089 3.911 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.144 0.856 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.020 0.980 33 H 0.271 0.729 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.327 11.952 -3.950 15.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.100 4.100 3 C -0.139 4.139 4 C -0.172 4.172 5 C -0.100 4.100 6 C -0.104 4.104 7 C -0.232 4.232 8 C 0.030 3.970 9 C 0.054 3.946 10 H 0.044 0.956 11 C -0.195 4.195 12 C -0.638 4.638 13 H 0.086 0.914 14 C -0.167 4.167 15 N -0.526 5.526 16 Si 0.860 3.140 17 H -0.209 1.209 18 H -0.211 1.211 19 H -0.203 1.203 20 N -0.172 5.172 21 C -0.070 4.070 22 C -0.016 4.016 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.133 0.867 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.162 0.838 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.154 10.233 -3.700 14.883 hybrid contribution 0.524 1.596 -0.136 1.685 sum -9.630 11.829 -3.836 15.728 Atomic orbital electron populations 1.20903 0.92099 1.02282 1.01785 1.18755 0.94835 0.90386 1.06041 1.20494 0.94081 0.95795 1.03534 1.20440 0.93932 0.97368 1.05486 1.20203 0.99100 0.90705 0.99957 1.19386 0.91978 0.94086 1.04991 1.21392 0.98379 0.88892 1.14528 1.21080 0.84282 0.94134 0.97483 1.17870 0.98701 0.83602 0.94471 0.95630 1.22134 0.99005 1.01208 0.97201 1.21871 1.10114 0.94493 1.37366 0.91442 1.25659 1.01582 0.96045 0.93375 1.70837 0.98553 1.38509 1.44692 0.84199 0.75992 0.76694 0.77076 1.20890 1.21055 1.20341 1.43901 1.05968 1.03661 1.63670 1.22094 0.80962 1.01450 1.02542 1.18054 0.93736 0.84367 1.05488 0.91808 0.91782 0.91733 0.86673 0.86832 0.86663 0.83836 0.93150 0.92459 0.96092 0.91861 0.91781 0.90255 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.27 36.01 0.33 -1.03 16 2 C -0.10 -1.53 5.89 -104.47 -0.62 -2.14 16 3 C -0.12 -1.72 9.64 -39.54 -0.38 -2.10 16 4 C -0.15 -2.26 9.97 -39.95 -0.40 -2.65 16 5 C -0.08 -1.38 10.05 -39.65 -0.40 -1.78 16 6 C -0.10 -1.98 6.37 -105.13 -0.67 -2.65 16 7 C -0.21 -4.61 9.92 -37.67 -0.37 -4.98 16 8 C 0.14 2.99 5.77 -81.77 -0.47 2.52 16 9 C 0.07 1.71 1.82 -92.92 -0.17 1.54 16 10 H 0.03 0.59 5.77 -51.93 -0.30 0.29 16 11 C -0.14 -2.97 8.91 37.16 0.33 -2.64 16 12 C -0.60 -16.39 8.47 -34.44 -0.29 -16.68 16 13 H 0.07 1.99 6.83 -52.49 -0.36 1.63 16 14 C 0.04 1.12 5.18 -17.82 -0.09 1.02 16 15 N -0.89 -26.60 13.70 55.43 0.76 -25.84 16 16 Si 1.03 24.14 26.47 -169.99 -4.50 19.64 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -5.94 6.19 56.52 0.35 -5.59 16 20 N -0.49 -9.32 3.18 -117.20 -0.37 -9.69 16 21 C 0.07 1.05 10.00 59.84 0.60 1.64 16 22 C 0.09 1.68 6.74 -83.98 -0.57 1.11 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.63 8.02 -51.93 -0.42 0.22 16 25 H 0.06 0.73 5.14 -51.93 -0.27 0.46 16 26 H 0.12 1.32 8.04 -52.49 -0.42 0.89 16 27 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 28 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 29 H 0.14 3.25 7.45 -52.49 -0.39 2.86 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 1.27 5.53 -51.93 -0.29 0.98 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.27 8.06 8.73 -40.82 -0.36 7.70 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.95 5.15 -51.93 -0.27 0.68 16 36 H 0.08 1.20 7.09 -51.93 -0.37 0.84 16 LS Contribution 288.20 15.07 4.34 4.34 Total: -1.00 -30.30 288.20 -7.75 -38.06 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.82 Total: 2.30 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: -3.17 Total: -28.81 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.39 Total: -35.53 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -4.50 Total: 19.64 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.30 -7.75 -38.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259529466.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.283 kcal (2) G-P(sol) polarization free energy of solvation -30.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds