Wall clock time and date at job start Mon Mar 30 2020 06:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.37795 * 120.11182 * 2 1 4 4 C 1.38791 * 120.66849 * 180.02562 * 3 2 1 5 5 C 1.36665 * 120.52508 * 0.02562 * 4 3 2 6 6 C 1.39592 * 119.76657 * 359.97438 * 5 4 3 7 7 C 1.46487 * 134.03453 * 179.97438 * 6 5 4 8 8 C 1.34234 * 106.99751 * 180.02562 * 7 6 5 9 9 C 1.50703 * 125.02913 * 180.02562 * 8 7 6 10 10 H 1.08996 * 109.47269 * 204.99675 * 9 8 7 11 11 C 1.53005 * 109.46877 * 84.99933 * 9 8 7 12 12 C 1.50706 * 109.47144 * 325.00111 * 9 8 7 13 13 H 1.07994 * 119.99821 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99945 * 180.02562 * 12 9 8 15 15 N 1.31520 * 119.99805 * 359.97438 * 14 12 9 16 16 Si 1.86797 * 120.00026 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.46841 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47289 * 119.99748 * 16 14 12 19 19 H 1.48506 * 109.46945 * 240.00042 * 16 14 12 20 20 N 1.36834 * 109.93902 * 0.02562 * 8 7 6 21 21 C 1.46501 * 125.06030 * 180.02562 * 20 8 7 22 22 C 1.37689 * 109.87344 * 359.97438 * 20 8 7 23 23 H 1.09001 * 109.47026 * 269.97350 * 1 2 3 24 24 H 1.09001 * 109.47656 * 29.97796 * 1 2 3 25 25 H 1.09006 * 109.47336 * 149.97408 * 1 2 3 26 26 H 1.07996 * 119.66624 * 0.02562 * 3 2 1 27 27 H 1.07996 * 119.73354 * 180.27729 * 4 3 2 28 28 H 1.07999 * 120.11655 * 180.02562 * 5 4 3 29 29 H 1.08001 * 126.49885 * 359.96744 * 7 6 5 30 30 H 1.09001 * 109.46566 * 180.02562 * 11 9 8 31 31 H 1.08998 * 109.47104 * 299.99404 * 11 9 8 32 32 H 1.08998 * 109.47033 * 59.99952 * 11 9 8 33 33 H 0.97005 * 119.99468 * 179.97438 * 15 14 12 34 34 H 1.09003 * 109.46758 * 269.99890 * 21 20 8 35 35 H 1.09001 * 109.47377 * 29.99506 * 21 20 8 36 36 H 1.08999 * 109.47287 * 150.00027 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1920 0.0000 4 6 3.5861 1.2055 -0.0005 5 6 4.2916 0.0350 -0.0016 6 6 3.6116 -1.1841 -0.0016 7 6 4.0353 -2.5863 -0.0030 8 6 2.9200 -3.3333 -0.0028 9 6 2.8880 -4.8400 -0.0034 10 1 1.9489 -5.1832 -0.4373 11 6 3.0036 -5.3531 1.4334 12 6 4.0406 -5.3666 -0.8191 13 1 4.7273 -4.6790 -1.2903 14 6 4.2177 -6.7262 -0.9647 15 7 3.3811 -7.5634 -0.3913 16 14 5.6459 -7.3789 -1.9764 17 1 6.4343 -6.2402 -2.5121 18 1 6.5152 -8.2233 -1.1183 19 1 5.1231 -8.1922 -3.1037 20 7 1.8165 -2.5242 -0.0019 21 6 0.4288 -2.9936 -0.0009 22 6 2.2047 -1.2031 -0.0010 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3634 -0.8898 -0.5143 26 1 1.6546 2.1252 0.0004 27 1 4.1125 2.1484 0.0040 28 1 5.3714 0.0532 -0.0016 29 1 5.0522 -2.9501 -0.0049 30 1 2.9809 -6.4428 1.4329 31 1 3.9427 -5.0099 1.8673 32 1 2.1700 -4.9721 2.0234 33 1 3.5056 -8.5199 -0.4940 34 1 0.0839 -3.1100 -1.0284 35 1 0.3702 -3.9532 0.5128 36 1 -0.2002 -2.2671 0.5134 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259529468.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:44 Heat of formation + Delta-G solvation = 46.943042 kcal Electronic energy + Delta-G solvation = -17262.448256 eV Core-core repulsion = 14711.541380 eV Total energy + Delta-G solvation = -2550.906876 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.83163 -36.98673 -34.20121 -33.32471 -30.84944 -30.66979 -27.66439 -27.03786 -25.21932 -24.85037 -22.41343 -21.20375 -19.90223 -18.73173 -16.31291 -16.11594 -15.58516 -14.87935 -14.81626 -14.38732 -13.74154 -13.29086 -13.23838 -12.87158 -12.67673 -12.34464 -12.13112 -12.02115 -11.69216 -11.46722 -11.06000 -10.97498 -10.83630 -10.57849 -10.43072 -10.27001 -10.13340 -9.75275 -9.00573 -8.86536 -8.45327 -7.43541 -6.85564 -6.09342 -4.14669 1.63692 2.12382 3.26903 3.34842 3.38732 3.47629 3.54963 4.37819 4.40269 5.06619 5.20117 5.21716 5.23760 5.38036 5.51668 5.56327 5.66625 5.71044 5.77643 5.91650 6.00422 6.13296 6.27612 6.44404 6.61964 6.71768 6.77793 6.91936 6.96606 7.06101 7.10598 7.35022 7.41161 7.66648 7.77531 7.87065 8.02284 8.08480 8.35517 8.88035 9.50468 10.97597 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032140 B = 0.006554 C = 0.005808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.981062 B = 4270.881397 C = 4819.777005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.097 4.097 3 C -0.122 4.122 4 C -0.154 4.154 5 C -0.083 4.083 6 C -0.098 4.098 7 C -0.218 4.218 8 C 0.135 3.865 9 C 0.095 3.905 10 H 0.035 0.965 11 C -0.130 4.130 12 C -0.505 4.505 13 H 0.066 0.934 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.897 3.103 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.284 1.284 20 N -0.487 5.487 21 C 0.074 3.926 22 C 0.088 3.912 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.115 0.885 29 H 0.144 0.856 30 H 0.089 0.911 31 H 0.033 0.967 32 H 0.006 0.994 33 H 0.261 0.739 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.701 11.763 1.608 12.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.100 4.100 3 C -0.141 4.141 4 C -0.173 4.173 5 C -0.101 4.101 6 C -0.103 4.103 7 C -0.241 4.241 8 C 0.029 3.971 9 C 0.076 3.924 10 H 0.053 0.947 11 C -0.188 4.188 12 C -0.544 4.544 13 H 0.084 0.916 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.724 3.276 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.210 1.210 20 N -0.170 5.170 21 C -0.068 4.068 22 C -0.018 4.018 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.162 0.838 30 H 0.108 0.892 31 H 0.053 0.947 32 H 0.025 0.975 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.061 11.417 1.625 12.593 hybrid contribution 0.692 -0.419 -0.557 0.983 sum -4.369 10.997 1.068 11.881 Atomic orbital electron populations 1.20885 0.92196 1.02452 1.01646 1.18749 0.94790 0.90429 1.06041 1.20466 0.94073 0.95787 1.03774 1.20424 0.93921 0.97327 1.05639 1.20188 0.99018 0.90732 1.00189 1.19395 0.91980 0.94127 1.04829 1.21390 0.98394 0.88855 1.15509 1.21531 0.84111 0.95063 0.96379 1.17615 0.98806 0.81113 0.94874 0.94707 1.21769 0.97345 1.04309 0.95353 1.21152 1.11040 0.91643 1.30560 0.91622 1.24949 0.96492 0.96856 0.95711 1.69887 1.36747 1.02577 1.43878 0.86446 0.82251 0.78964 0.79891 1.19563 1.20927 1.21038 1.43927 1.06099 1.03588 1.63406 1.22039 0.80848 1.01385 1.02519 1.18077 0.93764 0.84441 1.05566 0.91864 0.91823 0.91684 0.86782 0.86947 0.86739 0.83823 0.89193 0.94743 0.97486 0.92906 0.91870 0.89748 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 8.80 36.00 0.32 -1.11 16 2 C -0.10 -1.57 5.89 -104.47 -0.62 -2.18 16 3 C -0.12 -1.79 9.67 -39.54 -0.38 -2.17 16 4 C -0.15 -2.30 9.97 -39.95 -0.40 -2.70 16 5 C -0.08 -1.42 10.05 -39.65 -0.40 -1.81 16 6 C -0.10 -1.97 6.37 -105.14 -0.67 -2.64 16 7 C -0.22 -4.81 9.90 -37.67 -0.37 -5.18 16 8 C 0.14 3.04 5.77 -81.77 -0.47 2.56 16 9 C 0.10 2.33 2.24 -92.92 -0.21 2.13 16 10 H 0.03 0.90 7.34 -51.93 -0.38 0.52 16 11 C -0.13 -3.07 8.95 37.16 0.33 -2.74 16 12 C -0.51 -13.53 8.21 -34.44 -0.28 -13.81 16 13 H 0.07 1.77 6.75 -52.49 -0.35 1.41 16 14 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 15 N -0.89 -24.59 11.32 55.43 0.63 -23.96 16 16 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 20 N -0.49 -9.59 3.18 -117.19 -0.37 -9.96 16 21 C 0.07 1.16 9.30 59.85 0.56 1.72 16 22 C 0.09 1.68 6.74 -83.99 -0.57 1.11 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 25 H 0.06 0.79 5.51 -51.93 -0.29 0.51 16 26 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 27 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 29 H 0.14 3.15 7.56 -52.49 -0.40 2.75 16 30 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.34 7.40 -51.93 -0.38 0.95 16 36 H 0.08 1.01 5.68 -51.93 -0.29 0.71 16 LS Contribution 291.97 15.07 4.40 4.40 Total: -1.00 -28.97 291.97 -8.55 -37.52 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -4.93 Total: 1.39 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -3.25 Total: -25.29 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.25 Total: -33.93 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.97 -8.55 -37.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259529468.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.463 kcal (2) G-P(sol) polarization free energy of solvation -28.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds