Wall clock time and date at job start Mon Mar 30 2020 06:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38829 * 119.66406 * 2 1 4 4 C 1.36626 * 120.52876 * 179.97438 * 3 2 1 5 5 C 1.39632 * 119.76110 * 0.04134 * 4 3 2 6 6 C 1.46492 * 134.02945 * 180.32181 * 5 4 3 7 7 C 1.34234 * 106.99595 * 180.02562 * 6 5 4 8 8 C 1.50703 * 125.03412 * 179.86032 * 7 6 5 9 9 H 1.09000 * 109.47088 * 204.69432 * 8 7 6 10 10 C 1.53005 * 109.46654 * 84.69875 * 8 7 6 11 11 C 1.50701 * 109.47151 * 324.70293 * 8 7 6 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 8 7 13 13 C 1.37871 * 119.99694 * 180.27762 * 11 8 7 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 8 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 8 16 16 H 1.48504 * 109.47266 * 60.00049 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47383 * 299.99456 * 15 13 11 19 19 N 1.36833 * 109.93130 * 359.60075 * 7 6 5 20 20 C 1.46502 * 125.06379 * 180.26475 * 19 7 6 21 21 C 1.37681 * 109.87288 * 0.26151 * 19 7 6 22 22 C 1.37750 * 119.66823 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.47287 * 270.02061 * 1 2 3 24 24 H 1.08995 * 109.47240 * 30.02821 * 1 2 3 25 25 H 1.09005 * 109.46820 * 150.02663 * 1 2 3 26 26 H 1.08003 * 119.73410 * 359.97369 * 3 2 1 27 27 H 1.07997 * 120.12109 * 180.02562 * 4 3 2 28 28 H 1.07997 * 126.49962 * 359.95001 * 6 5 4 29 29 H 1.08995 * 109.47438 * 299.99560 * 10 8 7 30 30 H 1.08996 * 109.47069 * 60.00420 * 10 8 7 31 31 H 1.09004 * 109.46658 * 179.97438 * 10 8 7 32 32 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 33 33 H 1.08998 * 109.46726 * 89.99655 * 20 19 7 34 34 H 1.08999 * 109.46913 * 209.99672 * 20 19 7 35 35 H 1.09000 * 109.46722 * 330.00158 * 20 19 7 36 36 H 1.07999 * 120.11035 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.2063 0.0000 4 6 3.5602 1.2270 0.0005 5 6 4.2716 0.0254 0.0002 6 6 5.6966 -0.3142 0.0065 7 6 5.7807 -1.6539 0.0018 8 6 7.0664 -2.4400 0.0027 9 1 6.8906 -3.4245 -0.4308 10 6 7.5668 -2.5975 1.4400 11 6 8.1023 -1.7097 -0.8127 12 1 7.8542 -0.7705 -1.2846 13 6 9.3646 -2.2437 -0.9612 14 7 9.6666 -3.3876 -0.3868 15 14 10.6462 -1.3423 -1.9783 16 1 10.8911 -0.0008 -1.3902 17 1 11.9118 -2.1193 -1.9814 18 1 10.1551 -1.1899 -3.3714 19 7 4.5261 -2.2000 0.0021 20 6 4.2330 -3.6354 0.0033 21 6 3.5801 -1.1996 0.0011 22 6 2.1889 -1.1969 0.0005 23 1 -0.3634 0.0004 1.0277 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3633 -0.8903 -0.5134 26 1 1.6443 2.1360 -0.0004 27 1 4.0880 2.1692 0.0009 28 1 6.5227 0.3814 0.0124 29 1 7.7427 -1.6130 1.8735 30 1 6.8177 -3.1257 2.0297 31 1 8.4966 -3.1665 1.4406 32 1 10.5547 -3.7634 -0.4917 33 1 4.1602 -3.9905 1.0312 34 1 3.2884 -3.8138 -0.5106 35 1 5.0325 -4.1698 -0.5099 36 1 1.6453 -2.1301 0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259538826.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:11 Heat of formation + Delta-G solvation = 29.565661 kcal Electronic energy + Delta-G solvation = -17039.260456 eV Core-core repulsion = 14487.600040 eV Total energy + Delta-G solvation = -2551.660416 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.18679 -38.55367 -36.10617 -34.03052 -33.00866 -31.40132 -30.46663 -27.35916 -27.11683 -26.44495 -23.93928 -22.34238 -21.85105 -20.05993 -18.13542 -17.74075 -17.05858 -16.52923 -16.18654 -15.70708 -15.17397 -14.76157 -14.65638 -14.36875 -13.93501 -13.79451 -13.45952 -13.26500 -13.15258 -12.87581 -12.83704 -12.79710 -12.43598 -12.41209 -12.15163 -11.71404 -11.59877 -11.53512 -10.99779 -10.51292 -10.33219 -8.81291 -8.34317 -8.13898 -6.26462 0.32284 0.80237 1.42954 1.43979 1.51677 1.95575 2.04706 2.44577 3.05118 3.15523 3.85131 3.97059 4.08710 4.13726 4.33180 4.39901 4.51878 4.58318 4.66303 4.71563 4.77122 4.93085 4.95633 4.97286 5.08137 5.10639 5.14861 5.29003 5.38213 5.49618 5.68669 5.71452 5.80980 5.91973 6.04670 6.11765 6.27640 6.52759 6.61092 6.79593 7.41419 8.91508 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.036135 B = 0.005930 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.688159 B = 4720.326884 C = 5194.032053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.079 4.079 3 C -0.150 4.150 4 C -0.086 4.086 5 C -0.139 4.139 6 C -0.234 4.234 7 C 0.109 3.891 8 C 0.100 3.900 9 H 0.015 0.985 10 C -0.116 4.116 11 C -0.525 4.525 12 H 0.055 0.945 13 C 0.019 3.981 14 N -0.915 5.915 15 Si 0.956 3.044 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.274 1.274 19 N -0.495 5.495 20 C 0.076 3.924 21 C 0.075 3.925 22 C -0.139 4.139 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.147 0.853 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.027 0.973 30 H 0.024 0.976 31 H 0.068 0.932 32 H 0.264 0.736 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.674 3.719 1.258 16.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.081 4.081 3 C -0.169 4.169 4 C -0.105 4.105 5 C -0.144 4.144 6 C -0.258 4.258 7 C 0.002 3.998 8 C 0.081 3.919 9 H 0.033 0.967 10 C -0.174 4.174 11 C -0.563 4.563 12 H 0.073 0.927 13 C -0.180 4.180 14 N -0.554 5.554 15 Si 0.782 3.218 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.200 1.200 19 N -0.178 5.178 20 C -0.065 4.065 21 C -0.031 4.031 22 C -0.159 4.159 23 H 0.097 0.903 24 H 0.098 0.902 25 H 0.090 0.910 26 H 0.165 0.835 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.093 0.907 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.570 3.221 1.281 15.951 hybrid contribution 1.383 0.118 -0.467 1.465 sum -14.187 3.338 0.814 14.597 Atomic orbital electron populations 1.20763 0.88428 1.03637 1.03065 1.19921 0.97432 0.91602 0.99117 1.20780 0.93098 0.98549 1.04450 1.20473 0.94615 0.95838 0.99556 1.19591 0.93132 0.93950 1.07688 1.21409 0.94235 0.94216 1.15940 1.21120 0.85929 0.93841 0.98929 1.17393 0.86505 0.93429 0.94571 0.96656 1.21575 1.00941 0.99419 0.95501 1.21316 0.96575 1.07206 1.31194 0.92692 1.25648 1.00021 0.95681 0.96670 1.69969 1.21624 1.19264 1.44571 0.85631 0.78201 0.78776 0.79198 1.19637 1.20574 1.19981 1.44065 1.04038 1.06413 1.63294 1.22037 1.03417 0.77502 1.03551 1.18636 0.91692 0.87602 1.05194 1.20089 0.88727 0.99467 1.07632 0.90280 0.90188 0.90952 0.83527 0.85407 0.85291 0.95405 0.95724 0.91309 0.92692 0.90574 0.88095 0.90693 0.84784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 9.99 71.24 0.71 -0.96 16 2 C -0.08 -2.02 5.88 -19.84 -0.12 -2.14 16 3 C -0.15 -3.98 9.61 22.03 0.21 -3.77 16 4 C -0.09 -2.83 10.05 22.23 0.22 -2.61 16 5 C -0.14 -5.60 6.37 -20.20 -0.13 -5.73 16 6 C -0.23 -10.77 9.90 23.51 0.23 -10.54 16 7 C 0.11 5.08 5.77 40.87 0.24 5.31 16 8 C 0.10 5.14 2.44 -12.28 -0.03 5.11 16 9 H 0.02 0.84 6.78 -2.39 -0.02 0.82 16 10 C -0.12 -5.74 8.95 71.98 0.64 -5.09 16 11 C -0.52 -29.15 8.20 25.60 0.21 -28.94 16 12 H 0.05 3.08 6.77 -2.91 -0.02 3.06 16 13 C 0.02 1.04 5.31 84.65 0.45 1.49 16 14 N -0.92 -51.65 11.33 21.45 0.24 -51.41 16 15 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 19 N -0.49 -19.73 3.18 -524.69 -1.67 -21.40 16 20 C 0.08 2.34 10.80 127.77 1.38 3.72 16 21 C 0.07 2.81 6.81 39.03 0.27 3.08 16 22 C -0.14 -4.11 9.60 22.37 0.21 -3.89 16 23 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 25 H 0.07 1.04 8.08 -2.38 -0.02 1.02 16 26 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 27 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 28 H 0.13 6.04 7.59 -2.91 -0.02 6.02 16 29 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 3.66 6.08 -2.38 -0.01 3.65 16 32 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 33 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.10 2.43 8.10 -2.39 -0.02 2.41 16 35 H 0.07 2.48 6.81 -2.39 -0.02 2.46 16 36 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -63.82 298.39 6.16 -57.66 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 1.06 Total: 14.49 kcal Atomic # 6 Polarization: -49.48 SS G_CDS: 4.50 Total: -44.97 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -1.42 Total: -72.81 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -63.82 6.16 -57.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259538826.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.227 kcal (2) G-P(sol) polarization free energy of solvation -63.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds