Wall clock time and date at job start Mon Mar 30 2020 06:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36659 * 120.11947 * 2 1 4 4 C 1.38786 * 120.53000 * 180.02562 * 3 2 1 5 5 C 1.37789 * 120.66651 * 359.97438 * 4 3 2 6 6 C 1.39082 * 119.77512 * 359.75340 * 5 4 3 7 7 C 1.39592 * 120.11681 * 180.02562 * 2 1 3 8 8 C 1.46491 * 134.03361 * 359.95039 * 7 2 1 9 9 C 1.50696 * 126.50795 * 0.02562 * 8 7 2 10 10 H 1.09007 * 109.46580 * 353.79177 * 9 8 7 11 11 C 1.53001 * 109.47277 * 233.79666 * 9 8 7 12 12 C 1.50698 * 109.47613 * 113.79045 * 9 8 7 13 13 H 1.08006 * 119.99527 * 0.02562 * 12 9 8 14 14 C 1.37876 * 120.00276 * 180.02562 * 12 9 8 15 15 N 1.31515 * 119.99619 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 119.99759 * 180.02562 * 14 12 9 17 17 H 1.48494 * 109.47324 * 59.99988 * 16 14 12 18 18 H 1.48505 * 109.46539 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47172 * 299.99205 * 16 14 12 20 20 C 1.34245 * 106.99675 * 180.02562 * 8 7 2 21 21 N 1.36837 * 109.93579 * 359.97438 * 20 8 7 22 22 C 1.46494 * 125.06113 * 179.97438 * 21 20 8 23 23 H 1.09003 * 109.46845 * 263.75226 * 1 2 3 24 24 H 1.09000 * 109.46796 * 23.74362 * 1 2 3 25 25 H 1.08992 * 109.47512 * 143.74794 * 1 2 3 26 26 H 1.08000 * 119.73223 * 0.04035 * 3 2 1 27 27 H 1.08000 * 119.66512 * 179.97438 * 4 3 2 28 28 H 1.07993 * 120.11068 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.46980 * 179.97438 * 11 9 8 30 30 H 1.08999 * 109.46766 * 299.99532 * 11 9 8 31 31 H 1.08997 * 109.47065 * 59.99346 * 11 9 8 32 32 H 0.97008 * 119.99359 * 180.02562 * 15 14 12 33 33 H 1.07997 * 125.03255 * 179.97438 * 20 8 7 34 34 H 1.09001 * 109.46829 * 90.03015 * 22 21 20 35 35 H 1.08993 * 109.47880 * 330.03003 * 22 21 20 36 36 H 1.09001 * 109.47271 * 210.02770 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1821 0.0000 4 6 3.5806 1.1920 -0.0005 5 6 4.2919 0.0119 -0.0005 6 6 3.6145 -1.2028 0.0052 7 6 2.2075 -1.2075 -0.0005 8 6 1.8074 -2.6167 -0.0003 9 6 0.3973 -3.1483 0.0002 10 1 -0.3030 -2.3204 0.1115 11 6 0.2210 -4.1254 1.1644 12 6 0.1290 -3.8620 -1.2996 13 1 0.9024 -3.9247 -2.0509 14 6 -1.1038 -4.4349 -1.5299 15 7 -2.0454 -4.3589 -0.6148 16 14 -1.4361 -5.3201 -3.1409 17 1 -0.4824 -6.4483 -3.2916 18 1 -2.8257 -5.8439 -3.1403 19 1 -1.2644 -4.3723 -4.2710 20 6 2.9352 -3.3448 -0.0005 21 7 4.0249 -2.5172 -0.0016 22 6 5.4203 -2.9631 -0.0016 23 1 -0.3633 -0.1118 1.0216 24 1 -0.3633 0.9407 -0.4138 25 1 -0.3634 -0.8286 -0.6076 26 1 1.6504 2.1160 0.0007 27 1 4.1084 2.1343 -0.0009 28 1 5.3717 0.0301 -0.0014 29 1 -0.7990 -4.5096 1.1650 30 1 0.9213 -4.9532 1.0531 31 1 0.4151 -3.6092 2.1045 32 1 -2.9126 -4.7623 -0.7767 33 1 2.9764 -4.4240 0.0000 34 1 5.7662 -3.0740 -1.0293 35 1 5.4957 -3.9212 0.5125 36 1 6.0374 -2.2257 0.5119 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259546927.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:23 Heat of formation + Delta-G solvation = 50.199844 kcal Electronic energy + Delta-G solvation = -17389.428158 eV Core-core repulsion = 14838.662507 eV Total energy + Delta-G solvation = -2550.765650 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.71758 -36.77530 -34.77663 -32.40432 -31.23223 -29.97092 -28.21574 -25.91782 -25.41937 -24.97268 -21.96448 -21.14914 -20.40727 -18.08718 -16.29744 -16.07961 -15.47678 -14.88984 -14.81398 -14.44462 -13.72724 -13.17373 -13.06829 -12.68999 -12.49374 -12.13077 -11.99069 -11.89222 -11.54251 -11.38697 -10.99725 -10.86481 -10.78431 -10.58826 -10.49609 -10.16757 -9.73477 -9.39211 -8.96803 -8.47325 -8.25249 -7.55029 -6.70286 -5.92066 -3.97962 1.71156 2.18210 3.34901 3.38816 3.39549 3.42018 3.57075 4.43818 4.53362 5.02581 5.19207 5.36993 5.37691 5.42158 5.52855 5.57577 5.64292 5.89366 5.95018 6.25632 6.30069 6.35222 6.39643 6.62685 6.74767 6.83301 6.96858 7.00876 7.15949 7.25953 7.41888 7.44760 7.60725 7.78466 7.88381 7.97991 8.18214 8.21725 8.53292 9.04579 9.65694 11.12509 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.024046 B = 0.007786 C = 0.006771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.143252 B = 3595.556877 C = 4134.055954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.018 4.018 3 C -0.171 4.171 4 C -0.103 4.103 5 C -0.148 4.148 6 C 0.097 3.903 7 C -0.107 4.107 8 C -0.100 4.100 9 C 0.094 3.906 10 H 0.048 0.952 11 C -0.131 4.131 12 C -0.501 4.501 13 H 0.053 0.947 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.889 3.111 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.017 3.983 21 N -0.496 5.496 22 C 0.087 3.913 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.093 0.907 26 H 0.113 0.887 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.023 0.977 31 H 0.007 0.993 32 H 0.260 0.740 33 H 0.161 0.839 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.675 6.022 2.350 12.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.019 4.019 3 C -0.190 4.190 4 C -0.122 4.122 5 C -0.169 4.169 6 C -0.010 4.010 7 C -0.112 4.112 8 C -0.106 4.106 9 C 0.076 3.924 10 H 0.066 0.934 11 C -0.189 4.189 12 C -0.539 4.539 13 H 0.071 0.929 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.717 3.283 17 H -0.205 1.205 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.104 4.104 21 N -0.182 5.182 22 C -0.056 4.056 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.112 0.888 26 H 0.131 0.869 27 H 0.132 0.868 28 H 0.125 0.875 29 H 0.102 0.898 30 H 0.042 0.958 31 H 0.026 0.974 32 H 0.070 0.930 33 H 0.178 0.822 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.800 5.781 2.377 12.478 hybrid contribution 0.070 -0.614 -0.952 1.134 sum 10.869 5.168 1.426 12.119 Atomic orbital electron populations 1.21006 0.91194 1.02992 1.02777 1.19163 0.95848 0.91106 0.95756 1.20380 0.93903 0.96938 1.07789 1.20583 0.94035 0.96350 1.01266 1.19791 0.98187 0.89850 1.09092 1.18234 0.93805 0.84770 1.04204 1.19211 0.91435 0.93803 1.06736 1.21181 0.97009 0.89164 1.03253 1.17499 0.85632 0.94904 0.94407 0.93435 1.21788 1.03225 0.98407 0.95451 1.21138 0.97797 1.34189 1.00812 0.92887 1.24934 0.96213 0.96372 0.96441 1.69877 1.04246 1.45522 1.33437 0.86711 0.77103 0.80050 0.84445 1.20468 1.21358 1.20371 1.21502 0.84582 0.95749 1.08524 1.43682 1.05622 1.03905 1.64969 1.21741 0.80832 1.00893 1.02098 0.91431 0.92664 0.88818 0.86865 0.86758 0.87463 0.89820 0.95804 0.97427 0.93033 0.82200 0.92160 0.90508 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.29 8.99 36.01 0.32 -1.96 16 2 C -0.02 -0.35 5.87 -104.69 -0.61 -0.97 16 3 C -0.17 -2.83 9.60 -39.95 -0.38 -3.21 16 4 C -0.10 -1.57 10.01 -39.54 -0.40 -1.97 16 5 C -0.15 -2.39 9.96 -39.43 -0.39 -2.79 16 6 C 0.10 1.83 6.81 -83.99 -0.57 1.26 16 7 C -0.11 -2.27 6.15 -105.14 -0.65 -2.92 16 8 C -0.10 -2.27 5.00 -102.71 -0.51 -2.79 16 9 C 0.09 2.37 2.41 -92.93 -0.22 2.14 16 10 H 0.05 1.25 4.89 -51.92 -0.25 1.00 16 11 C -0.13 -3.18 8.79 37.16 0.33 -2.85 16 12 C -0.50 -13.69 8.49 -34.44 -0.29 -13.98 16 13 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 14 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 15 N -0.89 -25.12 11.32 55.43 0.63 -24.49 16 16 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C 0.02 0.35 10.66 -16.73 -0.18 0.17 16 21 N -0.50 -8.78 3.18 -121.81 -0.39 -9.16 16 22 C 0.09 1.06 11.03 59.84 0.66 1.72 16 23 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 24 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 25 H 0.09 2.02 5.88 -51.93 -0.31 1.72 16 26 H 0.11 1.59 8.05 -52.49 -0.42 1.16 16 27 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 28 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 29 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 30 H 0.02 0.54 7.83 -51.93 -0.41 0.13 16 31 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.16 2.99 7.96 -52.49 -0.42 2.58 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.80 8.13 -51.93 -0.42 0.38 16 36 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 295.96 15.07 4.46 4.46 Total: -1.00 -29.93 295.96 -8.35 -38.29 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -5.04 Total: 1.16 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: -3.00 Total: -26.56 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.24 Total: -33.66 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.93 -8.35 -38.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259546927.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.486 kcal (2) G-P(sol) polarization free energy of solvation -29.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds