Wall clock time and date at job start Mon Mar 30 2020 06:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36659 * 120.11947 * 2 1 4 4 C 1.38786 * 120.53000 * 180.02562 * 3 2 1 5 5 C 1.37789 * 120.66651 * 359.97438 * 4 3 2 6 6 C 1.39082 * 119.77512 * 359.75340 * 5 4 3 7 7 C 1.39592 * 120.11681 * 180.02562 * 2 1 3 8 8 C 1.46491 * 134.03361 * 359.95039 * 7 2 1 9 9 C 1.50696 * 126.50795 * 0.02562 * 8 7 2 10 10 H 1.09007 * 109.46580 * 353.79177 * 9 8 7 11 11 C 1.53001 * 109.47277 * 233.79666 * 9 8 7 12 12 C 1.50698 * 109.47613 * 113.79045 * 9 8 7 13 13 H 1.08006 * 119.99527 * 0.02562 * 12 9 8 14 14 C 1.37876 * 120.00276 * 180.02562 * 12 9 8 15 15 N 1.31515 * 119.99619 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 119.99759 * 180.02562 * 14 12 9 17 17 H 1.48494 * 109.47324 * 59.99988 * 16 14 12 18 18 H 1.48505 * 109.46539 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47172 * 299.99205 * 16 14 12 20 20 C 1.34245 * 106.99675 * 180.02562 * 8 7 2 21 21 N 1.36837 * 109.93579 * 359.97438 * 20 8 7 22 22 C 1.46494 * 125.06113 * 179.97438 * 21 20 8 23 23 H 1.09003 * 109.46845 * 263.75226 * 1 2 3 24 24 H 1.09000 * 109.46796 * 23.74362 * 1 2 3 25 25 H 1.08992 * 109.47512 * 143.74794 * 1 2 3 26 26 H 1.08000 * 119.73223 * 0.04035 * 3 2 1 27 27 H 1.08000 * 119.66512 * 179.97438 * 4 3 2 28 28 H 1.07993 * 120.11068 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.46980 * 179.97438 * 11 9 8 30 30 H 1.08999 * 109.46766 * 299.99532 * 11 9 8 31 31 H 1.08997 * 109.47065 * 59.99346 * 11 9 8 32 32 H 0.97008 * 119.99359 * 180.02562 * 15 14 12 33 33 H 1.07997 * 125.03255 * 179.97438 * 20 8 7 34 34 H 1.09001 * 109.46829 * 90.03015 * 22 21 20 35 35 H 1.08993 * 109.47880 * 330.03003 * 22 21 20 36 36 H 1.09001 * 109.47271 * 210.02770 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1821 0.0000 4 6 3.5806 1.1920 -0.0005 5 6 4.2919 0.0119 -0.0005 6 6 3.6145 -1.2028 0.0052 7 6 2.2075 -1.2075 -0.0005 8 6 1.8074 -2.6167 -0.0003 9 6 0.3973 -3.1483 0.0002 10 1 -0.3030 -2.3204 0.1115 11 6 0.2210 -4.1254 1.1644 12 6 0.1290 -3.8620 -1.2996 13 1 0.9024 -3.9247 -2.0509 14 6 -1.1038 -4.4349 -1.5299 15 7 -2.0454 -4.3589 -0.6148 16 14 -1.4361 -5.3201 -3.1409 17 1 -0.4824 -6.4483 -3.2916 18 1 -2.8257 -5.8439 -3.1403 19 1 -1.2644 -4.3723 -4.2710 20 6 2.9352 -3.3448 -0.0005 21 7 4.0249 -2.5172 -0.0016 22 6 5.4203 -2.9631 -0.0016 23 1 -0.3633 -0.1118 1.0216 24 1 -0.3633 0.9407 -0.4138 25 1 -0.3634 -0.8286 -0.6076 26 1 1.6504 2.1160 0.0007 27 1 4.1084 2.1343 -0.0009 28 1 5.3717 0.0301 -0.0014 29 1 -0.7990 -4.5096 1.1650 30 1 0.9213 -4.9532 1.0531 31 1 0.4151 -3.6092 2.1045 32 1 -2.9126 -4.7623 -0.7767 33 1 2.9764 -4.4240 0.0000 34 1 5.7662 -3.0740 -1.0293 35 1 5.4957 -3.9212 0.5125 36 1 6.0374 -2.2257 0.5119 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259546927.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:23 Heat of formation + Delta-G solvation = 35.434428 kcal Electronic energy + Delta-G solvation = -17390.068434 eV Core-core repulsion = 14838.662507 eV Total energy + Delta-G solvation = -2551.405927 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.10380 -38.09199 -36.59453 -34.08288 -32.67032 -31.59923 -29.62638 -27.27966 -27.16064 -26.69410 -23.59453 -22.54804 -21.89375 -19.62436 -18.21870 -17.51144 -16.95932 -16.43764 -16.10804 -16.05400 -15.11397 -14.67069 -14.42826 -14.39794 -14.12879 -13.57850 -13.28432 -13.19531 -13.15293 -12.98623 -12.79243 -12.77083 -12.44188 -12.24023 -11.95511 -11.83577 -11.54286 -11.18294 -10.86835 -10.34211 -10.00140 -8.92211 -8.21220 -7.95755 -6.14577 0.35458 0.85579 1.41792 1.42972 1.50497 2.02867 2.13360 2.48314 3.09972 3.24145 3.91616 4.04961 4.14550 4.21441 4.38975 4.49717 4.55165 4.61987 4.71381 4.82681 4.85041 4.92943 4.95325 5.05295 5.06190 5.23166 5.32706 5.40754 5.47037 5.64717 5.70141 5.89861 5.95258 6.04312 6.19642 6.27810 6.42001 6.55086 6.69036 6.93645 7.51852 9.01380 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.024046 B = 0.007786 C = 0.006771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.143252 B = 3595.556877 C = 4134.055954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.052 4.052 3 C -0.164 4.164 4 C -0.097 4.097 5 C -0.144 4.144 6 C 0.082 3.918 7 C -0.146 4.146 8 C -0.146 4.146 9 C 0.096 3.904 10 H 0.025 0.975 11 C -0.119 4.119 12 C -0.513 4.513 13 H 0.041 0.959 14 C 0.016 3.984 15 N -0.916 5.916 16 Si 0.948 3.052 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.278 1.278 20 C 0.023 3.977 21 N -0.494 5.494 22 C 0.078 3.922 23 H 0.062 0.938 24 H 0.081 0.919 25 H 0.052 0.948 26 H 0.140 0.860 27 H 0.157 0.843 28 H 0.143 0.857 29 H 0.058 0.942 30 H 0.028 0.972 31 H 0.016 0.984 32 H 0.260 0.740 33 H 0.167 0.833 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.266 7.317 1.967 15.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.053 4.053 3 C -0.184 4.184 4 C -0.116 4.116 5 C -0.165 4.165 6 C -0.025 4.025 7 C -0.151 4.151 8 C -0.152 4.152 9 C 0.078 3.922 10 H 0.043 0.957 11 C -0.177 4.177 12 C -0.551 4.551 13 H 0.059 0.941 14 C -0.182 4.182 15 N -0.556 5.556 16 Si 0.774 3.226 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.203 1.203 20 C -0.100 4.100 21 N -0.178 5.178 22 C -0.062 4.062 23 H 0.081 0.919 24 H 0.099 0.901 25 H 0.071 0.929 26 H 0.158 0.842 27 H 0.175 0.825 28 H 0.161 0.839 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.185 0.815 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 13.426 7.079 1.996 15.309 hybrid contribution -0.657 -0.930 -0.810 1.397 sum 12.769 6.150 1.185 14.222 Atomic orbital electron populations 1.20853 0.91757 1.02542 1.01858 1.19382 0.95914 0.91963 0.98017 1.20751 0.95004 0.96763 1.05844 1.21104 0.93525 0.97910 0.99035 1.20253 1.00042 0.88760 1.07427 1.18605 0.93146 0.86149 1.04589 1.19490 0.93300 0.93624 1.08652 1.20991 0.96280 0.90992 1.06938 1.17295 0.87436 0.93968 0.93541 0.95734 1.21623 1.01638 0.98500 0.95926 1.21365 0.97701 1.34450 1.01628 0.94060 1.25634 0.96034 0.97139 0.99432 1.70003 1.04459 1.46208 1.34956 0.85778 0.77184 0.79005 0.80664 1.19704 1.20746 1.20319 1.21545 0.85136 0.96143 1.07158 1.43912 1.06942 1.03242 1.63701 1.22114 0.78006 1.02494 1.03600 0.91886 0.90063 0.92887 0.84212 0.82495 0.83923 0.92308 0.95270 0.96493 0.93049 0.81538 0.90870 0.88818 0.88604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.39 8.99 71.24 0.64 -3.75 16 2 C -0.05 -2.03 5.87 -19.91 -0.12 -2.15 16 3 C -0.16 -5.04 9.60 22.03 0.21 -4.83 16 4 C -0.10 -2.55 10.01 22.29 0.22 -2.32 16 5 C -0.14 -4.11 9.96 22.37 0.22 -3.88 16 6 C 0.08 2.98 6.81 39.03 0.27 3.25 16 7 C -0.15 -6.28 6.15 -20.20 -0.12 -6.40 16 8 C -0.15 -6.84 5.00 -18.63 -0.09 -6.93 16 9 C 0.10 5.10 2.41 -12.29 -0.03 5.07 16 10 H 0.02 1.40 4.89 -2.38 -0.01 1.39 16 11 C -0.12 -6.04 8.79 71.98 0.63 -5.41 16 12 C -0.51 -29.18 8.49 25.60 0.22 -28.96 16 13 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 14 C 0.02 0.89 5.30 84.65 0.45 1.34 16 15 N -0.92 -53.48 11.32 21.45 0.24 -53.24 16 16 Si 0.95 44.60 29.54 68.60 2.03 46.63 16 17 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 20 C 0.02 0.94 10.66 83.00 0.88 1.83 16 21 N -0.49 -16.68 3.18 -539.29 -1.71 -18.39 16 22 C 0.08 1.66 11.03 127.77 1.41 3.07 16 23 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 24 H 0.08 2.57 8.03 -2.39 -0.02 2.55 16 25 H 0.05 2.46 5.88 -2.39 -0.01 2.45 16 26 H 0.14 3.44 8.05 -2.91 -0.02 3.41 16 27 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 28 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 29 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 30 H 0.03 1.38 7.83 -2.39 -0.02 1.36 16 31 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 33 H 0.17 6.28 7.96 -2.91 -0.02 6.26 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.09 1.67 8.13 -2.39 -0.02 1.66 16 36 H 0.10 1.59 8.10 -2.39 -0.02 1.57 16 Total: -1.00 -67.45 295.96 6.41 -61.04 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 1.06 Total: 14.04 kcal Atomic # 6 Polarization: -54.87 SS G_CDS: 4.79 Total: -50.08 kcal Atomic # 7 Polarization: -70.16 SS G_CDS: -1.47 Total: -71.63 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -67.45 6.41 -61.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259546927.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.474 kcal (2) G-P(sol) polarization free energy of solvation -67.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds