Wall clock time and date at job start Mon Mar 30 2020 05:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36670 * 119.73549 * 2 1 4 4 C 1.39585 * 119.76185 * 180.28556 * 3 2 1 5 5 C 1.46496 * 134.02941 * 179.74847 * 4 3 2 6 6 C 1.34238 * 106.99491 * 179.97438 * 5 4 3 7 7 N 1.36833 * 109.93949 * 0.02562 * 6 5 4 8 8 H 0.97007 * 125.05945 * 179.97438 * 7 6 5 9 9 C 1.37692 * 109.87615 * 359.97438 * 7 6 5 10 10 C 1.39084 * 133.51320 * 180.02562 * 9 7 6 11 11 C 1.50696 * 120.11513 * 359.95729 * 10 9 7 12 12 C 1.37791 * 119.77311 * 179.97438 * 10 9 7 13 13 C 1.50706 * 119.66351 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46953 * 89.99989 * 13 12 10 15 15 C 1.50706 * 109.46573 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00167 * 359.72054 * 15 14 13 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99350 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00608 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47353 * 89.99430 * 19 17 15 21 21 H 1.48494 * 109.47031 * 209.99977 * 19 17 15 22 22 H 1.48504 * 109.46680 * 329.99678 * 19 17 15 23 23 H 1.08996 * 109.47576 * 270.25361 * 1 2 3 24 24 H 1.09007 * 109.47265 * 30.25982 * 1 2 3 25 25 H 1.09002 * 109.46798 * 150.25863 * 1 2 3 26 26 H 1.08001 * 120.11655 * 0.02562 * 3 2 1 27 27 H 1.07998 * 126.50321 * 359.95222 * 5 4 3 28 28 H 1.08001 * 125.02608 * 179.97438 * 6 5 4 29 29 H 1.09007 * 109.46757 * 270.02382 * 11 10 9 30 30 H 1.09000 * 109.47096 * 30.01724 * 11 10 9 31 31 H 1.08990 * 109.47133 * 150.02309 * 11 10 9 32 32 H 1.09000 * 109.46974 * 329.99738 * 13 12 10 33 33 H 1.09001 * 109.46547 * 209.99828 * 13 12 10 34 34 H 1.09000 * 109.47486 * 60.00062 * 14 13 12 35 35 H 1.09001 * 109.47362 * 299.99339 * 14 13 12 36 36 H 0.97005 * 119.99656 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.1867 0.0000 4 6 3.5807 1.1874 -0.0060 5 6 4.5984 2.2411 -0.0125 6 6 5.7943 1.6316 -0.0159 7 7 5.6260 0.2736 -0.0128 8 1 6.3454 -0.3771 -0.0147 9 6 4.2833 -0.0316 -0.0065 10 6 3.5732 -1.2275 -0.0009 11 6 4.3079 -2.5432 -0.0020 12 6 2.1954 -1.2050 0.0053 13 6 1.4284 -2.5023 0.0119 14 6 1.1754 -2.9377 1.4566 15 6 0.4078 -4.2347 1.4632 16 1 0.1245 -4.6992 0.5303 17 6 0.0627 -4.8253 2.6603 18 7 -0.6075 -5.9568 2.6660 19 14 0.5459 -4.0179 4.2739 20 1 -0.5310 -3.0911 4.7058 21 1 0.7450 -5.0627 5.3101 22 1 1.8082 -3.2578 4.0885 23 1 -0.3634 0.0045 1.0276 24 1 -0.3634 0.8877 -0.5179 25 1 -0.3633 -0.8923 -0.5098 26 1 1.6424 2.1207 0.0004 27 1 4.4202 3.3063 -0.0145 28 1 6.7482 2.1380 -0.0212 29 1 4.4804 -2.8620 -1.0301 30 1 5.2644 -2.4256 0.5073 31 1 3.7103 -3.2934 0.5156 32 1 2.0072 -3.2692 -0.5028 33 1 0.4751 -2.3632 -0.4980 34 1 0.5966 -2.1708 1.9713 35 1 2.1287 -3.0768 1.9665 36 1 -0.8507 -6.3723 3.5082 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259563654.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:02 Heat of formation + Delta-G solvation = 34.367108 kcal Electronic energy + Delta-G solvation = -17060.490475 eV Core-core repulsion = 14509.038266 eV Total energy + Delta-G solvation = -2551.452209 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.07534 -37.86566 -33.95012 -33.05580 -31.69942 -30.52839 -28.61779 -27.17499 -25.86978 -24.68305 -21.38205 -20.62121 -20.19360 -19.58057 -17.72449 -16.74891 -15.30345 -15.09617 -14.56755 -14.16187 -13.88417 -13.26026 -13.11647 -13.06675 -12.85624 -12.60959 -12.55140 -12.26703 -12.12863 -11.56929 -11.35587 -11.09053 -10.82564 -10.66718 -10.45291 -10.02356 -9.73668 -9.63115 -9.18589 -9.12527 -8.51011 -7.65494 -7.29243 -6.02460 -4.00007 1.42957 1.96720 2.88368 3.29759 3.33037 3.40397 3.46220 4.17722 4.47878 4.88330 5.02107 5.28118 5.30835 5.32441 5.51914 5.55079 5.67683 5.79519 5.91561 5.95126 6.01954 6.08004 6.16237 6.26493 6.37433 6.44495 6.58534 6.59757 6.80217 6.92506 6.97465 7.02834 7.16524 7.37075 7.50775 7.53299 7.68663 7.82250 8.55817 9.02875 9.60806 11.10941 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.029040 B = 0.006311 C = 0.005959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.946110 B = 4435.766865 C = 4697.895184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.100 4.100 3 C -0.084 4.084 4 C -0.117 4.117 5 C -0.207 4.207 6 C 0.038 3.962 7 N -0.598 5.598 8 H 0.411 0.589 9 C 0.096 3.904 10 C -0.098 4.098 11 C -0.115 4.115 12 C -0.043 4.043 13 C -0.073 4.073 14 C -0.004 4.004 15 C -0.519 4.519 16 H 0.073 0.927 17 C 0.068 3.932 18 N -0.904 5.904 19 Si 0.875 3.125 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.265 1.265 23 H 0.068 0.932 24 H 0.056 0.944 25 H 0.075 0.925 26 H 0.116 0.884 27 H 0.140 0.860 28 H 0.164 0.836 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.013 0.987 35 H 0.016 0.984 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.206 14.481 -5.821 19.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.101 4.101 3 C -0.103 4.103 4 C -0.121 4.121 5 C -0.232 4.232 6 C -0.088 4.088 7 N -0.201 5.201 8 H 0.247 0.753 9 C -0.010 4.010 10 C -0.101 4.101 11 C -0.172 4.172 12 C -0.044 4.044 13 C -0.110 4.110 14 C -0.041 4.041 15 C -0.556 4.556 16 H 0.091 0.909 17 C -0.133 4.133 18 N -0.543 5.543 19 Si 0.702 3.298 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.190 1.190 23 H 0.087 0.913 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.134 0.866 27 H 0.158 0.842 28 H 0.181 0.819 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.031 0.969 35 H 0.034 0.966 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.238 14.284 -5.701 19.048 hybrid contribution 0.657 0.160 1.022 1.225 sum 11.895 14.444 -4.679 19.288 Atomic orbital electron populations 1.20814 0.91245 1.02354 1.02488 1.19301 0.96086 0.92156 1.02577 1.20014 0.91550 0.97318 1.01422 1.19087 0.93209 0.92196 1.07647 1.21610 0.90891 0.97954 1.12791 1.21674 0.99345 0.82482 1.05274 1.41715 1.05841 1.06684 1.65886 0.75286 1.18062 0.83140 0.94908 1.04913 1.18688 0.92847 0.91998 1.06545 1.20766 0.99301 0.95296 1.01805 1.19758 0.91820 0.95956 0.96909 1.20701 0.98487 0.91381 1.00426 1.19510 0.96632 0.96565 0.91387 1.21157 1.34697 1.05373 0.94419 0.90932 1.24990 0.94595 0.94672 0.99024 1.69916 1.39675 1.18074 1.26669 0.86843 0.79822 0.79304 0.83787 1.20248 1.21447 1.18960 0.91296 0.92523 0.90644 0.86629 0.84194 0.81877 0.91799 0.93210 0.89479 0.91642 0.91147 0.96869 0.96601 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 9.58 36.00 0.34 -1.39 16 2 C -0.10 -1.72 5.85 -104.99 -0.61 -2.34 16 3 C -0.08 -1.34 9.68 -39.65 -0.38 -1.73 16 4 C -0.12 -1.87 6.37 -105.14 -0.67 -2.54 16 5 C -0.21 -2.65 11.08 -37.67 -0.42 -3.07 16 6 C 0.04 0.42 11.81 -16.73 -0.20 0.22 16 7 N -0.60 -7.36 6.07 -10.65 -0.06 -7.42 16 8 H 0.41 3.89 8.87 -40.82 -0.36 3.53 16 9 C 0.10 1.53 6.95 -83.99 -0.58 0.95 16 10 C -0.10 -1.69 5.89 -104.47 -0.62 -2.31 16 11 C -0.12 -1.76 9.18 36.00 0.33 -1.43 16 12 C -0.04 -0.80 5.13 -104.58 -0.54 -1.34 16 13 C -0.07 -1.47 4.17 -27.88 -0.12 -1.59 16 14 C 0.00 -0.09 3.88 -27.88 -0.11 -0.20 16 15 C -0.52 -14.69 9.66 -34.44 -0.33 -15.02 16 16 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 17 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 18 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 19 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 23 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 24 H 0.06 0.72 8.08 -51.92 -0.42 0.30 16 25 H 0.07 1.20 5.90 -51.93 -0.31 0.89 16 26 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 27 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 30 H 0.05 0.65 7.99 -51.93 -0.42 0.24 16 31 H 0.09 1.51 5.81 -51.93 -0.30 1.21 16 32 H 0.06 1.29 6.66 -51.93 -0.35 0.95 16 33 H 0.07 1.39 5.89 -51.93 -0.31 1.09 16 34 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 35 H 0.02 0.39 6.45 -51.93 -0.33 0.05 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 292.92 15.07 4.41 4.41 Total: -1.00 -32.41 292.92 -8.43 -40.83 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -4.88 Total: 1.78 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: -4.00 Total: -29.87 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.71 Total: -34.57 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.41 -8.43 -40.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259563654.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.202 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds