Wall clock time and date at job start Mon Mar 30 2020 05:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36670 * 119.73549 * 2 1 4 4 C 1.39585 * 119.76185 * 180.28556 * 3 2 1 5 5 C 1.46496 * 134.02941 * 179.74847 * 4 3 2 6 6 C 1.34238 * 106.99491 * 179.97438 * 5 4 3 7 7 N 1.36833 * 109.93949 * 0.02562 * 6 5 4 8 8 H 0.97007 * 125.05945 * 179.97438 * 7 6 5 9 9 C 1.37692 * 109.87615 * 359.97438 * 7 6 5 10 10 C 1.39084 * 133.51320 * 180.02562 * 9 7 6 11 11 C 1.50696 * 120.11513 * 359.95729 * 10 9 7 12 12 C 1.37791 * 119.77311 * 179.97438 * 10 9 7 13 13 C 1.50706 * 119.66351 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46953 * 89.99989 * 13 12 10 15 15 C 1.50706 * 109.46573 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00167 * 359.72054 * 15 14 13 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99350 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00608 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47353 * 89.99430 * 19 17 15 21 21 H 1.48494 * 109.47031 * 209.99977 * 19 17 15 22 22 H 1.48504 * 109.46680 * 329.99678 * 19 17 15 23 23 H 1.08996 * 109.47576 * 270.25361 * 1 2 3 24 24 H 1.09007 * 109.47265 * 30.25982 * 1 2 3 25 25 H 1.09002 * 109.46798 * 150.25863 * 1 2 3 26 26 H 1.08001 * 120.11655 * 0.02562 * 3 2 1 27 27 H 1.07998 * 126.50321 * 359.95222 * 5 4 3 28 28 H 1.08001 * 125.02608 * 179.97438 * 6 5 4 29 29 H 1.09007 * 109.46757 * 270.02382 * 11 10 9 30 30 H 1.09000 * 109.47096 * 30.01724 * 11 10 9 31 31 H 1.08990 * 109.47133 * 150.02309 * 11 10 9 32 32 H 1.09000 * 109.46974 * 329.99738 * 13 12 10 33 33 H 1.09001 * 109.46547 * 209.99828 * 13 12 10 34 34 H 1.09000 * 109.47486 * 60.00062 * 14 13 12 35 35 H 1.09001 * 109.47362 * 299.99339 * 14 13 12 36 36 H 0.97005 * 119.99656 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.1867 0.0000 4 6 3.5807 1.1874 -0.0060 5 6 4.5984 2.2411 -0.0125 6 6 5.7943 1.6316 -0.0159 7 7 5.6260 0.2736 -0.0128 8 1 6.3454 -0.3771 -0.0147 9 6 4.2833 -0.0316 -0.0065 10 6 3.5732 -1.2275 -0.0009 11 6 4.3079 -2.5432 -0.0020 12 6 2.1954 -1.2050 0.0053 13 6 1.4284 -2.5023 0.0119 14 6 1.1754 -2.9377 1.4566 15 6 0.4078 -4.2347 1.4632 16 1 0.1245 -4.6992 0.5303 17 6 0.0627 -4.8253 2.6603 18 7 -0.6075 -5.9568 2.6660 19 14 0.5459 -4.0179 4.2739 20 1 -0.5310 -3.0911 4.7058 21 1 0.7450 -5.0627 5.3101 22 1 1.8082 -3.2578 4.0885 23 1 -0.3634 0.0045 1.0276 24 1 -0.3634 0.8877 -0.5179 25 1 -0.3633 -0.8923 -0.5098 26 1 1.6424 2.1207 0.0004 27 1 4.4202 3.3063 -0.0145 28 1 6.7482 2.1380 -0.0212 29 1 4.4804 -2.8620 -1.0301 30 1 5.2644 -2.4256 0.5073 31 1 3.7103 -3.2934 0.5156 32 1 2.0072 -3.2692 -0.5028 33 1 0.4751 -2.3632 -0.4980 34 1 0.5966 -2.1708 1.9713 35 1 2.1287 -3.0768 1.9665 36 1 -0.8507 -6.3723 3.5082 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259563654.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:01 Heat of formation + Delta-G solvation = 15.840421 kcal Electronic energy + Delta-G solvation = -17061.293853 eV Core-core repulsion = 14509.038266 eV Total energy + Delta-G solvation = -2552.255587 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.15468 -39.10061 -35.64804 -34.58646 -33.39275 -31.79020 -29.93362 -28.58862 -27.01785 -26.34130 -23.07298 -21.87537 -21.20919 -20.94705 -19.03461 -18.70158 -16.57345 -16.39875 -16.30116 -15.57408 -15.13378 -14.78011 -14.52287 -14.26813 -14.21760 -13.99979 -13.83124 -13.74889 -13.49606 -13.07208 -12.94837 -12.51509 -12.42713 -12.07597 -11.95524 -11.67510 -11.48920 -11.42627 -11.15422 -10.75794 -10.31110 -8.85831 -8.40082 -8.29444 -6.32155 0.26776 0.73397 1.33008 1.34073 1.46713 1.90819 2.34683 2.35576 2.94816 3.06043 3.83240 4.01292 4.03258 4.21544 4.31869 4.42629 4.50060 4.59741 4.71084 4.74960 4.77144 4.89974 4.93521 4.95178 4.97400 5.09283 5.19704 5.28173 5.34723 5.50454 5.50936 5.64638 5.72058 5.88097 5.91706 6.00815 6.29462 6.35287 6.75064 6.80184 7.32259 8.87231 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.029040 B = 0.006311 C = 0.005959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.946110 B = 4435.766865 C = 4697.895184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.116 4.116 3 C -0.090 4.090 4 C -0.133 4.133 5 C -0.230 4.230 6 C 0.063 3.937 7 N -0.591 5.591 8 H 0.425 0.575 9 C 0.075 3.925 10 C -0.105 4.105 11 C -0.112 4.112 12 C -0.075 4.075 13 C -0.060 4.060 14 C 0.007 3.993 15 C -0.526 4.526 16 H 0.037 0.963 17 C 0.011 3.989 18 N -0.949 5.949 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.255 1.255 23 H 0.061 0.939 24 H 0.082 0.918 25 H 0.062 0.938 26 H 0.137 0.863 27 H 0.162 0.838 28 H 0.213 0.787 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.011 0.989 35 H 0.012 0.988 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.684 17.254 -5.334 22.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.117 4.117 3 C -0.109 4.109 4 C -0.138 4.138 5 C -0.255 4.255 6 C -0.063 4.063 7 N -0.195 5.195 8 H 0.264 0.736 9 C -0.032 4.032 10 C -0.107 4.107 11 C -0.169 4.169 12 C -0.076 4.076 13 C -0.097 4.097 14 C -0.031 4.031 15 C -0.564 4.564 16 H 0.055 0.945 17 C -0.186 4.186 18 N -0.590 5.590 19 Si 0.765 3.235 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.179 1.179 23 H 0.079 0.921 24 H 0.101 0.899 25 H 0.081 0.919 26 H 0.155 0.845 27 H 0.180 0.820 28 H 0.229 0.771 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.030 0.970 35 H 0.031 0.969 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.735 17.057 -5.228 22.515 hybrid contribution -0.021 -0.668 0.772 1.021 sum 13.714 16.390 -4.456 21.830 Atomic orbital electron populations 1.20797 0.90689 1.03011 1.02164 1.19474 0.96729 0.92313 1.03167 1.20260 0.92112 0.97585 1.00905 1.19600 0.93786 0.93534 1.06851 1.21962 0.90567 0.98703 1.14254 1.22466 1.00814 0.81557 1.01499 1.41831 1.04867 1.07866 1.64907 0.73649 1.18106 0.84932 0.94449 1.05732 1.18859 0.92680 0.93264 1.05940 1.20746 0.99661 0.93903 1.02568 1.19602 0.92563 0.95191 1.00276 1.20431 0.98768 0.92787 0.97745 1.19354 0.95408 0.94211 0.94093 1.21465 1.34788 1.06929 0.93188 0.94451 1.25871 0.94582 0.95196 1.02955 1.70054 1.41260 1.19783 1.27876 0.85791 0.80031 0.78594 0.79089 1.19178 1.20628 1.17886 0.92051 0.89885 0.91948 0.84516 0.81996 0.77077 0.90494 0.90954 0.92170 0.92124 0.91558 0.97022 0.96933 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.40 9.58 71.23 0.68 -2.71 16 2 C -0.12 -3.94 5.85 -20.10 -0.12 -4.06 16 3 C -0.09 -2.74 9.68 22.23 0.22 -2.53 16 4 C -0.13 -3.94 6.37 -20.20 -0.13 -4.07 16 5 C -0.23 -5.03 11.08 23.51 0.26 -4.77 16 6 C 0.06 1.07 11.81 83.00 0.98 2.05 16 7 N -0.59 -12.38 6.07 -187.61 -1.14 -13.52 16 8 H 0.42 6.42 8.87 -92.70 -0.82 5.59 16 9 C 0.07 2.24 6.95 39.03 0.27 2.51 16 10 C -0.10 -3.54 5.89 -19.77 -0.12 -3.66 16 11 C -0.11 -3.36 9.18 71.23 0.65 -2.71 16 12 C -0.08 -2.80 5.13 -19.84 -0.10 -2.90 16 13 C -0.06 -2.52 4.17 29.85 0.12 -2.40 16 14 C 0.01 0.33 3.88 29.85 0.12 0.45 16 15 C -0.53 -30.91 9.66 25.60 0.25 -30.66 16 16 H 0.04 2.39 7.99 -2.91 -0.02 2.36 16 17 C 0.01 0.65 5.47 84.66 0.46 1.11 16 18 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 19 Si 0.94 45.84 27.47 68.60 1.88 47.72 16 20 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 22 H -0.25 -11.90 6.54 99.48 0.65 -11.25 16 23 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.08 2.04 8.08 -2.38 -0.02 2.02 16 25 H 0.06 2.04 5.90 -2.39 -0.01 2.03 16 26 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 27 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 28 H 0.21 1.48 8.06 -2.91 -0.02 1.46 16 29 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.07 1.77 7.99 -2.39 -0.02 1.75 16 31 H 0.06 2.12 5.81 -2.39 -0.01 2.10 16 32 H 0.06 2.52 6.66 -2.39 -0.02 2.51 16 33 H 0.07 2.77 5.89 -2.39 -0.01 2.75 16 34 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 35 H 0.01 0.62 6.45 -2.39 -0.02 0.60 16 36 H 0.27 15.74 8.31 -92.70 -0.77 14.97 16 Total: -1.00 -71.72 292.92 4.80 -66.92 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.21 Total: 13.13 kcal Atomic # 6 Polarization: -57.90 SS G_CDS: 3.55 Total: -54.35 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -0.84 Total: -73.42 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.88 Total: 47.72 kcal Total: -71.72 4.80 -66.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259563654.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.761 kcal (2) G-P(sol) polarization free energy of solvation -71.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds