Wall clock time and date at job start Mon Mar 30 2020 06:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39133 * 120.11182 * 2 1 4 4 C 1.40670 * 119.32854 * 180.29063 * 3 2 1 5 5 C 1.46489 * 106.03904 * 179.72826 * 4 3 2 6 6 C 1.34245 * 106.99268 * 0.02562 * 5 4 3 7 7 N 1.36829 * 109.93381 * 359.97438 * 6 5 4 8 8 C 1.46496 * 125.06325 * 180.02562 * 7 6 5 9 9 C 1.39628 * 119.93174 * 359.73326 * 4 3 2 10 10 C 1.36623 * 119.76431 * 359.97438 * 9 4 3 11 11 C 1.37748 * 120.10757 * 179.74838 * 2 1 3 12 12 C 1.50696 * 119.66776 * 359.97438 * 11 2 1 13 13 C 1.53004 * 109.46978 * 84.72800 * 12 11 2 14 14 C 1.50696 * 109.46978 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00204 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00404 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99411 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00591 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47111 * 89.99975 * 18 16 14 20 20 H 1.48501 * 109.47391 * 210.00020 * 18 16 14 21 21 H 1.48500 * 109.47071 * 329.99945 * 18 16 14 22 22 H 1.09007 * 109.46831 * 277.23568 * 1 2 3 23 23 H 1.08995 * 109.46773 * 37.23078 * 1 2 3 24 24 H 1.08988 * 109.47327 * 157.23767 * 1 2 3 25 25 H 1.07995 * 126.50355 * 179.97438 * 5 4 3 26 26 H 1.08002 * 125.02713 * 179.97438 * 6 5 4 27 27 H 1.08997 * 109.46798 * 262.96363 * 8 7 6 28 28 H 1.08999 * 109.46999 * 22.96133 * 8 7 6 29 29 H 1.09004 * 109.46833 * 142.96551 * 8 7 6 30 30 H 1.07998 * 120.11821 * 180.02562 * 9 4 3 31 31 H 1.07998 * 119.73669 * 180.02562 * 10 9 4 32 32 H 1.09002 * 109.47072 * 204.72369 * 12 11 2 33 33 H 1.08995 * 109.46947 * 324.72852 * 12 11 2 34 34 H 1.09002 * 109.46868 * 299.99694 * 13 12 11 35 35 H 1.08995 * 109.47239 * 60.00230 * 13 12 11 36 36 H 0.97000 * 119.99905 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2050 1.2036 0.0000 4 6 3.6116 1.1843 -0.0062 5 6 4.0355 2.5865 -0.0112 6 6 2.9202 3.3336 -0.0073 7 7 1.8167 2.5245 -0.0008 8 6 0.4290 2.9938 0.0043 9 6 4.2917 -0.0351 -0.0067 10 6 3.5863 -1.2051 -0.0005 11 6 2.1980 -1.1916 0.0052 12 6 1.4394 -2.4937 0.0115 13 6 1.0676 -2.8743 -1.4230 14 6 0.3085 -4.1760 -1.4167 15 1 0.1113 -4.6817 -0.4829 16 6 -0.1344 -4.7217 -2.6029 17 7 0.1053 -4.1057 -3.7399 18 14 -1.0748 -6.3357 -2.5951 19 1 -2.5285 -6.0610 -2.4665 20 1 -0.8190 -7.0638 -3.8639 21 1 -0.6245 -7.1654 -1.4488 22 1 -0.3633 0.1294 1.0196 23 1 -0.3633 0.8182 -0.6218 24 1 -0.3633 -0.9475 -0.3976 25 1 5.0524 2.9503 -0.0161 26 1 2.8973 4.4134 -0.0090 27 1 0.0490 2.9931 1.0259 28 1 0.3862 4.0058 -0.3985 29 1 -0.1807 2.3318 -0.6107 30 1 5.3715 -0.0534 -0.0110 31 1 4.1128 -2.1481 -0.0005 32 1 2.0633 -3.2756 0.4447 33 1 0.5318 -2.3825 0.6048 34 1 0.4438 -2.0924 -1.8562 35 1 1.9752 -2.9854 -2.0163 36 1 -0.2066 -4.4894 -4.5745 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259572710.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:02 Heat of formation + Delta-G solvation = 46.346961 kcal Electronic energy + Delta-G solvation = -16923.329590 eV Core-core repulsion = 14372.396866 eV Total energy + Delta-G solvation = -2550.932724 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.06400 -37.45270 -34.11352 -33.07803 -31.14618 -30.85581 -27.97508 -27.42265 -25.32087 -24.43972 -21.83825 -21.44359 -19.65892 -19.44661 -16.64105 -16.32262 -15.74278 -15.28219 -14.84649 -14.44449 -14.02852 -13.42590 -13.10584 -12.89868 -12.77479 -12.46885 -12.37761 -12.19955 -11.95566 -11.51489 -11.30967 -10.91770 -10.84029 -10.61604 -10.45293 -10.27125 -9.75503 -9.52572 -9.04575 -8.97984 -8.31672 -7.63879 -7.12101 -5.96696 -3.99671 1.55014 2.09901 2.96278 3.03658 3.33320 3.39779 3.43233 4.32055 4.48783 4.78380 4.93307 5.07751 5.15942 5.30432 5.38624 5.41616 5.55763 5.71601 5.73859 5.89977 5.98732 6.02167 6.17910 6.32286 6.41074 6.47177 6.66578 6.76348 6.98843 7.05665 7.08188 7.18117 7.31643 7.54359 7.67088 7.74048 7.88395 8.04873 8.44547 9.07812 9.64140 11.14158 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.035958 B = 0.005322 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.503952 B = 5259.490563 C = 5647.533913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.098 4.098 3 C 0.103 3.897 4 C -0.123 4.123 5 C -0.206 4.206 6 C 0.036 3.964 7 N -0.489 5.489 8 C 0.072 3.928 9 C -0.082 4.082 10 C -0.135 4.135 11 C -0.040 4.040 12 C -0.078 4.078 13 C 0.030 3.970 14 C -0.521 4.521 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.089 0.911 25 H 0.140 0.860 26 H 0.161 0.839 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.115 0.885 31 H 0.120 0.880 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.019 0.981 35 H 0.017 0.983 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.544 14.350 8.036 16.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 C -0.002 4.002 4 C -0.127 4.127 5 C -0.231 4.231 6 C -0.089 4.089 7 N -0.173 5.173 8 C -0.070 4.070 9 C -0.101 4.101 10 C -0.154 4.154 11 C -0.041 4.041 12 C -0.116 4.116 13 C -0.007 4.007 14 C -0.559 4.559 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.108 0.892 25 H 0.158 0.842 26 H 0.178 0.822 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.036 0.964 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.181 14.480 7.846 16.773 hybrid contribution -0.493 -0.718 -0.196 0.893 sum 2.688 13.762 7.651 15.973 Atomic orbital electron populations 1.21030 0.91722 1.04144 1.00999 1.18660 0.95357 0.89462 1.06622 1.18093 0.93532 0.84057 1.04543 1.19101 0.91970 0.93448 1.08181 1.21584 0.97592 0.91123 1.12829 1.21646 0.85389 0.95994 1.05837 1.43696 1.05767 1.04102 1.63724 1.22163 0.80955 1.00980 1.02906 1.20143 0.98836 0.90591 1.00535 1.20600 0.93672 0.97698 1.03470 1.19899 0.93485 0.94788 0.95956 1.20826 0.97941 0.91130 1.01657 1.19079 0.96620 0.96036 0.88952 1.21274 1.35157 1.06731 0.92761 0.92628 1.25020 0.96282 0.97429 0.95653 1.69981 1.46527 1.39181 0.97672 0.86617 0.80197 0.83909 0.77417 1.20722 1.21267 1.19853 0.92327 0.92375 0.89175 0.84176 0.82156 0.91679 0.90365 0.89344 0.86681 0.86160 0.92253 0.92153 0.96282 0.96433 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.03 8.66 36.01 0.31 -1.72 16 2 C -0.10 -1.82 5.89 -104.47 -0.62 -2.44 16 3 C 0.10 1.79 6.74 -83.99 -0.57 1.22 16 4 C -0.12 -2.10 6.37 -105.14 -0.67 -2.77 16 5 C -0.21 -2.87 11.08 -37.67 -0.42 -3.28 16 6 C 0.04 0.45 11.27 -16.73 -0.19 0.26 16 7 N -0.49 -6.90 3.18 -121.80 -0.39 -7.29 16 8 C 0.07 0.74 10.32 59.84 0.62 1.35 16 9 C -0.08 -1.38 10.05 -39.65 -0.40 -1.78 16 10 C -0.14 -2.47 9.59 -39.94 -0.38 -2.85 16 11 C -0.04 -0.79 5.13 -104.58 -0.54 -1.32 16 12 C -0.08 -1.67 4.56 -27.88 -0.13 -1.79 16 13 C 0.03 0.79 4.74 -27.88 -0.13 0.66 16 14 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 15 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -27.11 13.29 55.43 0.74 -26.37 16 18 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.06 0.85 5.09 -51.93 -0.26 0.59 16 24 H 0.09 1.70 5.15 -51.94 -0.27 1.43 16 25 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 26 H 0.16 1.35 8.06 -52.49 -0.42 0.92 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.59 8.11 -51.93 -0.42 0.17 16 29 H 0.09 0.95 5.17 -51.93 -0.27 0.69 16 30 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 32 H 0.06 1.23 8.04 -51.93 -0.42 0.81 16 33 H 0.06 1.23 6.84 -51.93 -0.36 0.88 16 34 H 0.02 0.52 7.05 -51.93 -0.37 0.16 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 294.47 15.07 4.44 4.44 Total: -1.00 -32.42 294.47 -8.61 -41.03 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -4.86 Total: -0.50 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: -3.52 Total: -27.96 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.35 Total: -33.66 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.42 -8.61 -41.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259572710.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.379 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds