Wall clock time and date at job start Mon Mar 30 2020 06:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39133 * 120.11182 * 2 1 4 4 C 1.40670 * 119.32854 * 180.29063 * 3 2 1 5 5 C 1.46489 * 106.03904 * 179.72826 * 4 3 2 6 6 C 1.34245 * 106.99268 * 0.02562 * 5 4 3 7 7 N 1.36829 * 109.93381 * 359.97438 * 6 5 4 8 8 C 1.46496 * 125.06325 * 180.02562 * 7 6 5 9 9 C 1.39628 * 119.93174 * 359.73326 * 4 3 2 10 10 C 1.36623 * 119.76431 * 359.97438 * 9 4 3 11 11 C 1.37748 * 120.10757 * 179.74838 * 2 1 3 12 12 C 1.50696 * 119.66776 * 359.97438 * 11 2 1 13 13 C 1.53004 * 109.46978 * 84.72800 * 12 11 2 14 14 C 1.50696 * 109.46978 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00204 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00404 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99411 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00591 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47111 * 89.99975 * 18 16 14 20 20 H 1.48501 * 109.47391 * 210.00020 * 18 16 14 21 21 H 1.48500 * 109.47071 * 329.99945 * 18 16 14 22 22 H 1.09007 * 109.46831 * 277.23568 * 1 2 3 23 23 H 1.08995 * 109.46773 * 37.23078 * 1 2 3 24 24 H 1.08988 * 109.47327 * 157.23767 * 1 2 3 25 25 H 1.07995 * 126.50355 * 179.97438 * 5 4 3 26 26 H 1.08002 * 125.02713 * 179.97438 * 6 5 4 27 27 H 1.08997 * 109.46798 * 262.96363 * 8 7 6 28 28 H 1.08999 * 109.46999 * 22.96133 * 8 7 6 29 29 H 1.09004 * 109.46833 * 142.96551 * 8 7 6 30 30 H 1.07998 * 120.11821 * 180.02562 * 9 4 3 31 31 H 1.07998 * 119.73669 * 180.02562 * 10 9 4 32 32 H 1.09002 * 109.47072 * 204.72369 * 12 11 2 33 33 H 1.08995 * 109.46947 * 324.72852 * 12 11 2 34 34 H 1.09002 * 109.46868 * 299.99694 * 13 12 11 35 35 H 1.08995 * 109.47239 * 60.00230 * 13 12 11 36 36 H 0.97000 * 119.99905 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2050 1.2036 0.0000 4 6 3.6116 1.1843 -0.0062 5 6 4.0355 2.5865 -0.0112 6 6 2.9202 3.3336 -0.0073 7 7 1.8167 2.5245 -0.0008 8 6 0.4290 2.9938 0.0043 9 6 4.2917 -0.0351 -0.0067 10 6 3.5863 -1.2051 -0.0005 11 6 2.1980 -1.1916 0.0052 12 6 1.4394 -2.4937 0.0115 13 6 1.0676 -2.8743 -1.4230 14 6 0.3085 -4.1760 -1.4167 15 1 0.1113 -4.6817 -0.4829 16 6 -0.1344 -4.7217 -2.6029 17 7 0.1053 -4.1057 -3.7399 18 14 -1.0748 -6.3357 -2.5951 19 1 -2.5285 -6.0610 -2.4665 20 1 -0.8190 -7.0638 -3.8639 21 1 -0.6245 -7.1654 -1.4488 22 1 -0.3633 0.1294 1.0196 23 1 -0.3633 0.8182 -0.6218 24 1 -0.3633 -0.9475 -0.3976 25 1 5.0524 2.9503 -0.0161 26 1 2.8973 4.4134 -0.0090 27 1 0.0490 2.9931 1.0259 28 1 0.3862 4.0058 -0.3985 29 1 -0.1807 2.3318 -0.6107 30 1 5.3715 -0.0534 -0.0110 31 1 4.1128 -2.1481 -0.0005 32 1 2.0633 -3.2756 0.4447 33 1 0.5318 -2.3825 0.6048 34 1 0.4438 -2.0924 -1.8562 35 1 1.9752 -2.9854 -2.0163 36 1 -0.2066 -4.4894 -4.5745 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259572710.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:01 Heat of formation + Delta-G solvation = 29.141708 kcal Electronic energy + Delta-G solvation = -16924.075666 eV Core-core repulsion = 14372.396866 eV Total energy + Delta-G solvation = -2551.678800 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.22479 -38.80312 -35.74011 -34.73896 -32.90805 -32.01765 -29.56090 -28.62528 -26.75839 -25.97635 -23.36851 -22.96270 -21.10755 -20.60017 -18.51627 -17.74293 -16.99405 -16.53989 -16.36514 -16.19020 -15.34853 -14.56811 -14.44612 -14.35666 -14.08830 -13.98674 -13.70157 -13.62551 -13.32186 -13.07481 -12.83657 -12.75320 -12.51918 -12.04426 -11.94007 -11.83683 -11.53647 -11.40058 -11.06744 -10.54086 -10.24615 -8.94518 -8.33754 -8.17012 -6.30141 0.27797 0.75345 1.40591 1.42306 1.53609 1.87429 2.02924 2.42115 2.98655 3.14573 3.81521 3.91690 4.03526 4.11031 4.18598 4.30347 4.44468 4.50397 4.62807 4.63672 4.75219 4.82474 4.87013 4.91747 4.99516 5.05330 5.12274 5.28218 5.35929 5.53366 5.63640 5.68154 5.86799 5.89965 5.90752 6.01481 6.24815 6.39314 6.54357 6.86873 7.39094 8.93581 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.035958 B = 0.005322 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.503952 B = 5259.490563 C = 5647.533913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.107 4.107 3 C 0.078 3.922 4 C -0.141 4.141 5 C -0.226 4.226 6 C 0.055 3.945 7 N -0.491 5.491 8 C 0.063 3.937 9 C -0.086 4.086 10 C -0.153 4.153 11 C -0.075 4.075 12 C -0.060 4.060 13 C 0.041 3.959 14 C -0.542 4.542 15 H 0.062 0.938 16 C 0.000 4.000 17 N -0.935 5.935 18 Si 0.966 3.034 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.262 1.262 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.165 0.835 26 H 0.210 0.790 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.140 0.860 31 H 0.123 0.877 32 H 0.059 0.941 33 H 0.064 0.936 34 H -0.006 1.006 35 H -0.017 1.017 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.271 16.151 8.943 18.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.110 4.110 3 C -0.029 4.029 4 C -0.145 4.145 5 C -0.250 4.250 6 C -0.070 4.070 7 N -0.174 5.174 8 C -0.077 4.077 9 C -0.105 4.105 10 C -0.172 4.172 11 C -0.076 4.076 12 C -0.098 4.098 13 C 0.004 3.996 14 C -0.579 4.579 15 H 0.080 0.920 16 C -0.197 4.197 17 N -0.575 5.575 18 Si 0.790 3.210 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.186 1.186 22 H 0.097 0.903 23 H 0.094 0.906 24 H 0.077 0.923 25 H 0.183 0.817 26 H 0.226 0.774 27 H 0.097 0.903 28 H 0.132 0.868 29 H 0.096 0.904 30 H 0.158 0.842 31 H 0.141 0.859 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.013 0.987 35 H 0.001 0.999 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.898 16.293 8.772 18.730 hybrid contribution -0.385 -1.100 -0.483 1.262 sum 2.514 15.193 8.290 17.489 Atomic orbital electron populations 1.20994 0.90882 1.03127 1.02361 1.18851 0.96180 0.89856 1.06096 1.18202 0.93975 0.85270 1.05417 1.19639 0.92324 0.95081 1.07501 1.21949 0.99583 0.89480 1.14026 1.22449 0.84182 0.97905 1.02437 1.44055 1.07723 1.02994 1.62626 1.22428 0.78872 1.02459 1.03928 1.20416 1.00103 0.90207 0.99724 1.20715 0.93369 0.98681 1.04447 1.19805 0.94212 0.94361 0.99259 1.20514 0.98420 0.92542 0.98302 1.18875 0.94299 0.94898 0.91493 1.21703 1.35390 1.07583 0.93266 0.91952 1.25991 0.97199 1.01451 0.95100 1.70128 1.47734 1.41178 0.98446 0.85435 0.78859 0.78935 0.77748 1.19610 1.20857 1.18649 0.90317 0.90631 0.92251 0.81722 0.77358 0.90285 0.86848 0.90363 0.84215 0.85936 0.92189 0.91709 0.98748 0.99880 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.94 8.66 71.24 0.62 -3.33 16 2 C -0.11 -4.06 5.89 -19.76 -0.12 -4.17 16 3 C 0.08 2.64 6.74 39.03 0.26 2.91 16 4 C -0.14 -4.67 6.37 -20.20 -0.13 -4.80 16 5 C -0.23 -5.65 11.08 23.51 0.26 -5.39 16 6 C 0.06 1.15 11.27 83.00 0.94 2.09 16 7 N -0.49 -12.51 3.18 -539.27 -1.71 -14.23 16 8 C 0.06 1.10 10.32 127.77 1.32 2.42 16 9 C -0.09 -2.89 10.05 22.23 0.22 -2.67 16 10 C -0.15 -5.79 9.59 22.04 0.21 -5.58 16 11 C -0.08 -3.09 5.13 -19.84 -0.10 -3.20 16 12 C -0.06 -2.71 4.56 29.85 0.14 -2.58 16 13 C 0.04 2.29 4.74 29.85 0.14 2.44 16 14 C -0.54 -31.56 9.11 25.60 0.23 -31.33 16 15 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 16 C 0.00 0.01 5.46 84.65 0.46 0.47 16 17 N -0.93 -58.33 13.29 21.45 0.28 -58.05 16 18 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 22 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 23 H 0.08 2.21 5.09 -2.39 -0.01 2.20 16 24 H 0.06 2.35 5.15 -2.39 -0.01 2.33 16 25 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 26 H 0.21 2.23 8.06 -2.91 -0.02 2.20 16 27 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.11 1.18 8.11 -2.39 -0.02 1.16 16 29 H 0.08 1.53 5.17 -2.39 -0.01 1.52 16 30 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 31 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 32 H 0.06 2.60 8.04 -2.39 -0.02 2.58 16 33 H 0.06 2.77 6.84 -2.39 -0.02 2.76 16 34 H -0.01 -0.35 7.05 -2.39 -0.02 -0.36 16 35 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 36 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -72.67 294.47 6.12 -66.55 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 1.07 Total: 11.53 kcal Atomic # 6 Polarization: -57.17 SS G_CDS: 4.46 Total: -52.72 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: -1.43 Total: -72.27 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -72.67 6.12 -66.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259572710.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.690 kcal (2) G-P(sol) polarization free energy of solvation -72.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds