Wall clock time and date at job start Mon Mar 30 2020 05:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38834 * 119.66774 * 2 1 4 4 C 1.36628 * 120.53209 * 179.97438 * 3 2 1 5 5 C 1.39629 * 119.76327 * 359.97438 * 4 3 2 6 6 C 1.46482 * 134.03481 * 179.97438 * 5 4 3 7 7 C 1.50695 * 126.50522 * 0.02562 * 6 5 4 8 8 C 1.53001 * 109.47058 * 84.99511 * 7 6 5 9 9 C 1.53005 * 109.47166 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.46999 * 180.02562 * 9 8 7 11 11 H 1.07995 * 119.99936 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99446 * 179.97438 * 10 9 8 13 13 N 1.31504 * 120.00213 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99393 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47474 * 59.99769 * 14 12 10 16 16 H 1.48500 * 109.46816 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46995 * 299.99795 * 14 12 10 18 18 C 1.34241 * 106.99890 * 180.02562 * 6 5 4 19 19 N 1.36833 * 109.93022 * 0.02562 * 18 6 5 20 20 H 0.97000 * 125.06652 * 179.97438 * 19 18 6 21 21 C 1.37688 * 109.87243 * 0.02562 * 19 18 6 22 22 C 1.37747 * 119.66772 * 180.16408 * 2 1 3 23 23 H 1.09002 * 109.46470 * 90.00378 * 1 2 3 24 24 H 1.08999 * 109.47076 * 210.00108 * 1 2 3 25 25 H 1.08992 * 109.47445 * 330.00428 * 1 2 3 26 26 H 1.07999 * 119.73036 * 359.96944 * 3 2 1 27 27 H 1.07997 * 120.11684 * 179.97438 * 4 3 2 28 28 H 1.08991 * 109.47667 * 204.99791 * 7 6 5 29 29 H 1.09003 * 109.47274 * 325.00323 * 7 6 5 30 30 H 1.09004 * 109.47560 * 300.00204 * 8 7 6 31 31 H 1.09002 * 109.47136 * 60.00475 * 8 7 6 32 32 H 1.09000 * 109.46535 * 299.99650 * 9 8 7 33 33 H 1.08996 * 109.47607 * 59.99547 * 9 8 7 34 34 H 0.97003 * 120.00108 * 180.02562 * 13 12 10 35 35 H 1.08002 * 125.03847 * 180.02562 * 18 6 5 36 36 H 1.08001 * 120.11380 * 359.83731 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.2063 0.0000 4 6 3.5603 1.2269 0.0005 5 6 4.2717 0.0254 0.0016 6 6 5.6966 -0.3142 0.0019 7 6 6.8495 0.6562 0.0016 8 6 7.1584 1.0816 1.4385 9 6 8.3286 2.0673 1.4381 10 6 8.6333 2.4858 2.8535 11 1 8.0504 2.0887 3.6713 12 6 9.6563 3.3756 3.1041 13 7 10.3664 3.8587 2.1082 14 14 10.0336 3.8948 4.8584 15 1 10.3931 2.6991 5.6622 16 1 11.1694 4.8515 4.8581 17 1 8.8377 4.5473 5.4495 18 6 5.7807 -1.6540 0.0026 19 7 4.5260 -2.2001 0.0021 20 1 4.3319 -3.1505 0.0020 21 6 3.5801 -1.1996 0.0005 22 6 2.1888 -1.1969 -0.0034 23 1 -0.3632 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5137 26 1 1.6444 2.1359 -0.0005 27 1 4.0881 2.1692 0.0001 28 1 7.7273 0.1775 -0.4323 29 1 6.5854 1.5340 -0.5882 30 1 6.2806 1.5604 1.8725 31 1 7.4225 0.2039 2.0284 32 1 9.2065 1.5888 1.0041 33 1 8.0643 2.9450 0.8483 34 1 11.0864 4.4844 2.2846 35 1 6.7021 -2.2174 0.0033 36 1 1.6453 -2.1301 -0.0034 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259592165.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:08 Heat of formation + Delta-G solvation = 7.983451 kcal Electronic energy + Delta-G solvation = -16286.690848 eV Core-core repulsion = 13734.094558 eV Total energy + Delta-G solvation = -2552.596291 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.13279 -38.26370 -36.51723 -34.58128 -33.05173 -31.54646 -30.50804 -28.41507 -26.89435 -25.15262 -23.65581 -22.07981 -21.76526 -20.18405 -18.71705 -18.25891 -17.13478 -16.52268 -16.07867 -15.61590 -15.46433 -15.03761 -14.64825 -14.53379 -14.20845 -13.89933 -13.69653 -13.41408 -12.97880 -12.85316 -12.66712 -12.50385 -12.39486 -12.26014 -12.08131 -11.75761 -11.36659 -11.28044 -11.17183 -10.53332 -10.31003 -9.01758 -8.44896 -8.17579 -6.29517 0.23664 0.72318 1.39439 1.43053 1.51059 1.79672 2.31152 2.42235 2.97444 3.14027 3.85489 3.95930 4.08713 4.18358 4.34658 4.44745 4.56158 4.58759 4.67803 4.79502 4.84612 4.91888 4.96124 5.02499 5.08322 5.27355 5.29176 5.30250 5.35504 5.55434 5.66474 5.73710 5.80235 5.84904 5.90658 5.94179 6.28457 6.30642 6.80738 6.86984 7.39249 8.93307 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.031206 B = 0.004387 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.041302 B = 6380.805643 C = 6829.826957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.076 4.076 3 C -0.154 4.154 4 C -0.090 4.090 5 C -0.137 4.137 6 C -0.189 4.189 7 C -0.035 4.035 8 C -0.084 4.084 9 C 0.024 3.976 10 C -0.546 4.546 11 H 0.055 0.945 12 C 0.000 4.000 13 N -0.933 5.933 14 Si 0.964 3.036 15 H -0.266 1.266 16 H -0.280 1.280 17 H -0.269 1.269 18 C 0.056 3.944 19 N -0.584 5.584 20 H 0.431 0.569 21 C 0.085 3.915 22 C -0.137 4.137 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.136 0.864 27 H 0.110 0.890 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.035 0.965 31 H 0.047 0.953 32 H -0.004 1.004 33 H -0.011 1.011 34 H 0.264 0.736 35 H 0.197 0.803 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.028 -12.895 -5.496 22.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.077 4.077 3 C -0.173 4.173 4 C -0.109 4.109 5 C -0.142 4.142 6 C -0.196 4.196 7 C -0.073 4.073 8 C -0.122 4.122 9 C -0.013 4.013 10 C -0.584 4.584 11 H 0.073 0.927 12 C -0.197 4.197 13 N -0.573 5.573 14 Si 0.788 3.212 15 H -0.191 1.191 16 H -0.205 1.205 17 H -0.194 1.194 18 C -0.070 4.070 19 N -0.189 5.189 20 H 0.271 0.729 21 C -0.023 4.023 22 C -0.158 4.158 23 H 0.099 0.901 24 H 0.096 0.904 25 H 0.092 0.908 26 H 0.154 0.846 27 H 0.128 0.872 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.014 0.986 33 H 0.008 0.992 34 H 0.073 0.927 35 H 0.214 0.786 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -17.884 -12.940 -5.538 22.758 hybrid contribution 0.734 0.339 0.716 1.080 sum -17.150 -12.600 -4.822 21.821 Atomic orbital electron populations 1.20789 0.88626 1.03658 1.03157 1.19933 0.97429 0.91729 0.98632 1.20772 0.93213 0.98752 1.04520 1.20465 0.94717 0.96462 0.99207 1.19439 0.93334 0.93655 1.07778 1.20482 0.92469 0.94324 1.12350 1.19827 0.94550 0.96494 0.96475 1.21357 0.97173 0.97996 0.95678 1.19037 0.93337 0.93623 0.95312 1.21690 1.16237 1.26203 0.94261 0.92666 1.25975 0.95867 0.96123 1.01775 1.70086 1.21679 1.32257 1.33292 0.85521 0.77898 0.78357 0.79399 1.19089 1.20524 1.19371 1.21983 0.88757 0.93173 1.03132 1.41630 1.03840 1.08375 1.65048 0.72944 1.18468 0.91585 0.87956 1.04249 1.20147 0.89224 0.99310 1.07112 0.90137 0.90425 0.90811 0.84606 0.87189 0.91006 0.92963 0.94644 0.93401 0.98578 0.99238 0.92724 0.78569 0.83756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 9.99 71.24 0.71 -0.78 16 2 C -0.08 -1.68 5.88 -19.84 -0.12 -1.80 16 3 C -0.15 -3.98 9.62 22.04 0.21 -3.77 16 4 C -0.09 -2.87 10.05 22.23 0.22 -2.64 16 5 C -0.14 -4.54 6.35 -20.20 -0.13 -4.66 16 6 C -0.19 -6.26 5.57 -18.63 -0.10 -6.37 16 7 C -0.04 -1.33 5.75 29.85 0.17 -1.16 16 8 C -0.08 -3.79 5.14 30.60 0.16 -3.63 16 9 C 0.02 1.33 4.97 29.85 0.15 1.48 16 10 C -0.55 -32.63 9.11 25.60 0.23 -32.40 16 11 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 12 C 0.00 0.01 5.46 84.66 0.46 0.48 16 13 N -0.93 -58.31 13.29 21.45 0.28 -58.02 16 14 Si 0.96 45.55 29.54 68.60 2.03 47.58 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 18 C 0.06 1.42 11.73 83.00 0.97 2.39 16 19 N -0.58 -12.81 6.07 -187.60 -1.14 -13.94 16 20 H 0.43 5.89 8.96 -92.71 -0.83 5.06 16 21 C 0.09 2.30 7.28 39.03 0.28 2.59 16 22 C -0.14 -3.08 9.71 22.37 0.22 -2.86 16 23 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.08 0.88 8.08 -2.39 -0.02 0.86 16 25 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 26 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 27 H 0.11 3.63 8.06 -2.91 -0.02 3.60 16 28 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.03 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 33 H -0.01 -0.65 8.14 -2.39 -0.02 -0.66 16 34 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.20 3.70 8.06 -2.91 -0.02 3.68 16 36 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -72.02 307.21 4.85 -67.18 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.23 Total: 10.35 kcal Atomic # 6 Polarization: -56.58 SS G_CDS: 3.45 Total: -53.13 kcal Atomic # 7 Polarization: -71.12 SS G_CDS: -0.85 Total: -71.97 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -72.02 4.85 -67.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259592165.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.161 kcal (2) G-P(sol) polarization free energy of solvation -72.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds