Wall clock time and date at job start Mon Mar 30 2020 05:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36670 * 119.73350 * 2 1 4 4 C 1.39586 * 119.76411 * 180.02562 * 3 2 1 5 5 C 1.46495 * 134.03774 * 180.29289 * 4 3 2 6 6 C 1.50701 * 126.49607 * 0.02562 * 5 4 3 7 7 C 1.50694 * 109.47206 * 85.16503 * 6 5 4 8 8 H 1.07997 * 120.00188 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99951 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00141 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00138 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46816 * 59.99927 * 11 9 7 13 13 H 1.48500 * 109.47215 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.46800 * 300.00157 * 11 9 7 15 15 C 1.34233 * 107.00046 * 180.13442 * 5 4 3 16 16 N 1.36837 * 109.93996 * 359.59422 * 15 5 4 17 17 C 1.46495 * 125.06435 * 180.23251 * 16 15 5 18 18 C 1.37694 * 109.87181 * 0.26491 * 16 15 5 19 19 C 1.39089 * 133.51326 * 179.97438 * 18 16 15 20 20 C 1.37790 * 119.77868 * 180.02562 * 19 18 16 21 21 C 1.50698 * 119.66887 * 179.97438 * 20 19 18 22 22 H 1.08992 * 109.47479 * 89.99737 * 1 2 3 23 23 H 1.08999 * 109.46747 * 210.00311 * 1 2 3 24 24 H 1.09004 * 109.46864 * 329.99278 * 1 2 3 25 25 H 1.07997 * 120.11709 * 0.02562 * 3 2 1 26 26 H 1.09000 * 109.46570 * 205.16405 * 6 5 4 27 27 H 1.09000 * 109.47162 * 325.15915 * 6 5 4 28 28 H 0.96994 * 120.00551 * 179.97438 * 10 9 7 29 29 H 1.08002 * 125.03336 * 179.86397 * 15 5 4 30 30 H 1.08997 * 109.47518 * 90.02566 * 17 16 15 31 31 H 1.09006 * 109.47170 * 210.02462 * 17 16 15 32 32 H 1.09002 * 109.47189 * 330.02129 * 17 16 15 33 33 H 1.07998 * 120.10929 * 0.02562 * 19 18 16 34 34 H 1.08995 * 109.47104 * 269.98344 * 21 20 19 35 35 H 1.09004 * 109.46868 * 29.97826 * 21 20 19 36 36 H 1.09000 * 109.47267 * 149.97394 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.1868 0.0000 4 6 3.5807 1.1875 -0.0005 5 6 4.5985 2.2412 0.0047 6 6 4.3498 3.7275 0.0132 7 6 4.1499 4.1952 1.4317 8 1 4.1976 3.4870 2.2457 9 6 3.9060 5.5273 1.6905 10 7 3.8473 6.3897 0.6994 11 14 3.6573 6.1070 3.4488 12 1 4.8724 5.8032 4.2466 13 1 3.4125 7.5717 3.4572 14 1 2.4889 5.4068 4.0403 15 6 5.7944 1.6316 -0.0021 16 7 5.6261 0.2737 -0.0020 17 6 6.7126 -0.7090 -0.0036 18 6 4.2834 -0.0315 -0.0011 19 6 3.5732 -1.2274 -0.0012 20 6 2.1955 -1.2051 -0.0006 21 6 1.4284 -2.5022 -0.0012 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5140 25 1 1.6424 2.1206 0.0004 26 1 5.2070 4.2417 -0.4215 27 1 3.4576 3.9500 -0.5720 28 1 3.6754 7.3268 0.8813 29 1 6.7484 2.1380 -0.0026 30 1 6.9831 -0.9533 1.0237 31 1 6.3845 -1.6126 -0.5175 32 1 7.5785 -0.2925 -0.5181 33 1 4.0998 -2.1703 -0.0017 34 1 1.2428 -2.8141 -1.0290 35 1 2.0100 -3.2685 0.5115 36 1 0.4778 -2.3625 0.5135 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259601228.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:50 Heat of formation + Delta-G solvation = 42.800689 kcal Electronic energy + Delta-G solvation = -16919.566352 eV Core-core repulsion = 14368.479850 eV Total energy + Delta-G solvation = -2551.086502 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.70129 -37.46344 -33.79623 -32.37150 -31.46359 -30.78731 -28.33968 -26.95001 -25.46008 -24.66474 -22.43635 -21.57616 -19.65926 -18.56333 -16.36956 -16.07220 -15.38033 -14.86272 -14.70137 -14.37221 -13.86260 -13.65069 -13.48638 -12.58495 -12.44848 -12.40360 -12.35154 -12.00409 -11.91160 -11.71214 -11.58466 -11.15714 -10.83436 -10.71591 -10.45426 -10.22934 -10.09254 -9.59797 -9.37153 -8.64043 -8.31861 -7.39005 -6.74387 -5.92312 -3.96078 1.71238 2.13893 3.36953 3.37627 3.40975 3.43220 3.53169 4.41989 4.55860 5.00991 5.08694 5.26377 5.35715 5.38400 5.40903 5.44994 5.56210 5.59199 5.69407 5.77203 5.93359 5.98070 6.05521 6.13345 6.26367 6.40503 6.53037 6.63971 6.85598 7.01772 7.22788 7.43741 7.53685 7.65688 7.77564 7.97457 8.03462 8.07498 8.48846 9.09095 9.66886 11.15914 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.021003 B = 0.007087 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.827700 B = 3949.734924 C = 4820.266996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.134 4.134 3 C -0.046 4.046 4 C -0.101 4.101 5 C -0.104 4.104 6 C 0.081 3.919 7 C -0.504 4.504 8 H 0.054 0.946 9 C 0.057 3.943 10 N -0.897 5.897 11 Si 0.891 3.109 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.007 3.993 16 N -0.497 5.497 17 C 0.087 3.913 18 C 0.095 3.905 19 C -0.140 4.140 20 C -0.074 4.074 21 C -0.108 4.108 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.124 0.876 26 H 0.025 0.975 27 H 0.027 0.973 28 H 0.261 0.739 29 H 0.160 0.840 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.525 -15.745 -2.451 15.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.135 4.135 3 C -0.065 4.065 4 C -0.106 4.106 5 C -0.110 4.110 6 C 0.044 3.956 7 C -0.543 4.543 8 H 0.072 0.928 9 C -0.144 4.144 10 N -0.537 5.537 11 Si 0.719 3.281 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.202 1.202 15 C -0.114 4.114 16 N -0.183 5.183 17 C -0.055 4.055 18 C -0.011 4.011 19 C -0.161 4.161 20 C -0.075 4.075 21 C -0.165 4.165 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.142 0.858 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.177 0.823 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.126 0.874 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.243 -15.741 -2.488 15.938 hybrid contribution 0.149 0.394 1.043 1.125 sum -0.094 -15.347 -1.445 15.415 Atomic orbital electron populations 1.20722 0.91930 1.02118 1.01469 1.19089 0.95421 0.92310 1.06703 1.20241 0.92231 0.97449 0.96557 1.19259 0.93194 0.92188 1.05967 1.21236 0.89789 0.97036 1.02988 1.17703 0.97456 0.83322 0.97143 1.21092 1.48090 0.92768 0.92328 0.92758 1.24991 0.95625 0.96817 0.96932 1.69943 1.50004 1.02893 1.30863 0.86664 0.78736 0.77418 0.85246 1.20340 1.21312 1.20249 1.21514 0.99591 0.80785 1.09521 1.43613 1.03621 1.05752 1.65307 1.21734 0.89585 0.92112 1.02063 1.18224 0.83333 0.95227 1.04333 1.19606 0.92929 0.94311 1.09301 1.19206 0.92345 0.94489 1.01431 1.20765 0.99820 0.94259 1.01656 0.92128 0.91995 0.91951 0.85818 0.95662 0.95497 0.92958 0.82253 0.92211 0.91046 0.90521 0.87386 0.91798 0.92375 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 9.58 36.01 0.34 -1.07 16 2 C -0.13 -2.26 5.85 -104.99 -0.61 -2.88 16 3 C -0.05 -0.94 9.67 -39.65 -0.38 -1.32 16 4 C -0.10 -2.20 6.35 -105.14 -0.67 -2.87 16 5 C -0.10 -2.43 5.51 -102.71 -0.57 -2.99 16 6 C 0.08 2.17 5.50 -29.04 -0.16 2.01 16 7 C -0.50 -14.55 9.09 -34.44 -0.31 -14.86 16 8 H 0.05 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 10 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 11 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 C 0.01 0.13 11.20 -16.73 -0.19 -0.06 16 16 N -0.50 -8.75 3.18 -121.80 -0.39 -9.14 16 17 C 0.09 1.05 11.03 59.84 0.66 1.71 16 18 C 0.10 1.82 6.81 -83.98 -0.57 1.25 16 19 C -0.14 -2.30 9.60 -39.43 -0.38 -2.68 16 20 C -0.07 -1.15 5.88 -104.58 -0.61 -1.76 16 21 C -0.11 -1.24 9.58 36.00 0.34 -0.89 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.71 5.90 -51.93 -0.31 0.40 16 24 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 25 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.16 2.81 8.06 -52.49 -0.42 2.38 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 36 H 0.07 0.71 5.90 -51.93 -0.31 0.40 16 LS Contribution 303.55 15.07 4.57 4.57 Total: -1.00 -32.17 303.55 -8.52 -40.69 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -5.22 Total: -2.09 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -3.20 Total: -24.85 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.35 Total: -35.35 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.17 -8.52 -40.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259601228.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.491 kcal (2) G-P(sol) polarization free energy of solvation -32.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds