Wall clock time and date at job start Mon Mar 30 2020 05:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36670 * 119.73350 * 2 1 4 4 C 1.39586 * 119.76411 * 180.02562 * 3 2 1 5 5 C 1.46495 * 134.03774 * 180.29289 * 4 3 2 6 6 C 1.50701 * 126.49607 * 0.02562 * 5 4 3 7 7 C 1.50694 * 109.47206 * 85.16503 * 6 5 4 8 8 H 1.07997 * 120.00188 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99951 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00141 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00138 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46816 * 59.99927 * 11 9 7 13 13 H 1.48500 * 109.47215 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.46800 * 300.00157 * 11 9 7 15 15 C 1.34233 * 107.00046 * 180.13442 * 5 4 3 16 16 N 1.36837 * 109.93996 * 359.59422 * 15 5 4 17 17 C 1.46495 * 125.06435 * 180.23251 * 16 15 5 18 18 C 1.37694 * 109.87181 * 0.26491 * 16 15 5 19 19 C 1.39089 * 133.51326 * 179.97438 * 18 16 15 20 20 C 1.37790 * 119.77868 * 180.02562 * 19 18 16 21 21 C 1.50698 * 119.66887 * 179.97438 * 20 19 18 22 22 H 1.08992 * 109.47479 * 89.99737 * 1 2 3 23 23 H 1.08999 * 109.46747 * 210.00311 * 1 2 3 24 24 H 1.09004 * 109.46864 * 329.99278 * 1 2 3 25 25 H 1.07997 * 120.11709 * 0.02562 * 3 2 1 26 26 H 1.09000 * 109.46570 * 205.16405 * 6 5 4 27 27 H 1.09000 * 109.47162 * 325.15915 * 6 5 4 28 28 H 0.96994 * 120.00551 * 179.97438 * 10 9 7 29 29 H 1.08002 * 125.03336 * 179.86397 * 15 5 4 30 30 H 1.08997 * 109.47518 * 90.02566 * 17 16 15 31 31 H 1.09006 * 109.47170 * 210.02462 * 17 16 15 32 32 H 1.09002 * 109.47189 * 330.02129 * 17 16 15 33 33 H 1.07998 * 120.10929 * 0.02562 * 19 18 16 34 34 H 1.08995 * 109.47104 * 269.98344 * 21 20 19 35 35 H 1.09004 * 109.46868 * 29.97826 * 21 20 19 36 36 H 1.09000 * 109.47267 * 149.97394 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.1868 0.0000 4 6 3.5807 1.1875 -0.0005 5 6 4.5985 2.2412 0.0047 6 6 4.3498 3.7275 0.0132 7 6 4.1499 4.1952 1.4317 8 1 4.1976 3.4870 2.2457 9 6 3.9060 5.5273 1.6905 10 7 3.8473 6.3897 0.6994 11 14 3.6573 6.1070 3.4488 12 1 4.8724 5.8032 4.2466 13 1 3.4125 7.5717 3.4572 14 1 2.4889 5.4068 4.0403 15 6 5.7944 1.6316 -0.0021 16 7 5.6261 0.2737 -0.0020 17 6 6.7126 -0.7090 -0.0036 18 6 4.2834 -0.0315 -0.0011 19 6 3.5732 -1.2274 -0.0012 20 6 2.1955 -1.2051 -0.0006 21 6 1.4284 -2.5022 -0.0012 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5140 25 1 1.6424 2.1206 0.0004 26 1 5.2070 4.2417 -0.4215 27 1 3.4576 3.9500 -0.5720 28 1 3.6754 7.3268 0.8813 29 1 6.7484 2.1380 -0.0026 30 1 6.9831 -0.9533 1.0237 31 1 6.3845 -1.6126 -0.5175 32 1 7.5785 -0.2925 -0.5181 33 1 4.0998 -2.1703 -0.0017 34 1 1.2428 -2.8141 -1.0290 35 1 2.0100 -3.2685 0.5115 36 1 0.4778 -2.3625 0.5135 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259601228.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:50 Heat of formation + Delta-G solvation = 25.561995 kcal Electronic energy + Delta-G solvation = -16920.313878 eV Core-core repulsion = 14368.479850 eV Total energy + Delta-G solvation = -2551.834028 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.12288 -38.76471 -35.69493 -34.08169 -32.72470 -32.23229 -30.00853 -28.21794 -26.78343 -26.23353 -24.28938 -22.90264 -20.99972 -20.13217 -18.46781 -17.64481 -16.71703 -16.46655 -16.12918 -15.92006 -14.98220 -14.87691 -14.76006 -14.39161 -14.01212 -13.89567 -13.49828 -13.26453 -13.15379 -13.09573 -12.98163 -12.74597 -12.56948 -12.38885 -11.93135 -11.85388 -11.67104 -11.38834 -11.36113 -10.57633 -10.17308 -8.77543 -8.37202 -8.03309 -6.29168 0.30018 0.76523 1.36840 1.40609 1.48680 1.92886 2.08755 2.42825 3.01552 3.12482 3.85142 3.99480 4.07451 4.08946 4.26479 4.46778 4.50271 4.52611 4.65779 4.71546 4.82445 4.85770 4.93966 4.97803 5.02309 5.07874 5.19039 5.27530 5.35483 5.40211 5.54597 5.75481 5.81571 5.88694 6.02792 6.10454 6.27968 6.44635 6.64005 6.82457 7.38545 8.92328 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.021003 B = 0.007087 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.827700 B = 3949.734924 C = 4820.266996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.128 4.128 3 C -0.087 4.087 4 C -0.140 4.140 5 C -0.164 4.164 6 C 0.097 3.903 7 C -0.522 4.522 8 H 0.045 0.955 9 C 0.005 3.995 10 N -0.931 5.931 11 Si 0.962 3.038 12 H -0.267 1.267 13 H -0.277 1.277 14 H -0.272 1.272 15 C 0.026 3.974 16 N -0.492 5.492 17 C 0.078 3.922 18 C 0.083 3.917 19 C -0.134 4.134 20 C -0.073 4.073 21 C -0.105 4.105 22 H 0.075 0.925 23 H 0.091 0.909 24 H 0.053 0.947 25 H 0.095 0.905 26 H 0.004 0.996 27 H -0.010 1.010 28 H 0.265 0.735 29 H 0.179 0.821 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.146 0.854 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.386 -19.146 -1.458 19.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.129 4.129 3 C -0.106 4.106 4 C -0.145 4.145 5 C -0.171 4.171 6 C 0.059 3.941 7 C -0.560 4.560 8 H 0.063 0.937 9 C -0.193 4.193 10 N -0.572 5.572 11 Si 0.786 3.214 12 H -0.192 1.192 13 H -0.202 1.202 14 H -0.198 1.198 15 C -0.097 4.097 16 N -0.176 5.176 17 C -0.062 4.062 18 C -0.024 4.024 19 C -0.155 4.155 20 C -0.074 4.074 21 C -0.161 4.161 22 H 0.094 0.906 23 H 0.109 0.891 24 H 0.072 0.928 25 H 0.113 0.887 26 H 0.022 0.978 27 H 0.008 0.992 28 H 0.074 0.926 29 H 0.196 0.804 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.164 0.836 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.092 -19.185 -1.499 19.244 hybrid contribution 0.095 1.357 0.671 1.517 sum 0.004 -17.828 -0.828 17.847 Atomic orbital electron populations 1.20802 0.89485 1.03135 1.02728 1.19519 0.97313 0.91733 1.04385 1.20261 0.92248 0.97958 1.00159 1.19476 0.93906 0.93167 1.07906 1.20952 0.92432 0.95467 1.08228 1.17313 0.94696 0.86524 0.95566 1.21343 1.48458 0.93126 0.93048 0.93662 1.25897 0.94971 0.96783 1.01649 1.70071 1.50557 1.03300 1.33245 0.85553 0.78997 0.77234 0.79583 1.19161 1.20174 1.19762 1.21665 0.99043 0.82282 1.06705 1.43875 1.04495 1.05529 1.63720 1.22148 0.88578 0.91708 1.03741 1.18517 0.83891 0.95158 1.04827 1.20075 0.93366 0.94582 1.07470 1.19772 0.92598 0.95756 0.99300 1.20849 0.99996 0.91995 1.03271 0.90646 0.89082 0.92826 0.88691 0.97814 0.99175 0.92616 0.80392 0.90736 0.88628 0.88440 0.83623 0.90007 0.90369 0.90108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.67 9.58 71.24 0.68 -1.98 16 2 C -0.13 -4.28 5.85 -20.10 -0.12 -4.40 16 3 C -0.09 -3.77 9.67 22.23 0.22 -3.56 16 4 C -0.14 -6.41 6.35 -20.20 -0.13 -6.53 16 5 C -0.16 -8.14 5.51 -18.63 -0.10 -8.24 16 6 C 0.10 5.62 5.50 29.10 0.16 5.78 16 7 C -0.52 -31.87 9.09 25.60 0.23 -31.64 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 9 C 0.00 0.28 5.46 84.66 0.46 0.74 16 10 N -0.93 -58.36 13.29 21.45 0.28 -58.07 16 11 Si 0.96 46.32 29.54 68.60 2.03 48.34 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 14 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 15 C 0.03 1.07 11.20 83.00 0.93 2.00 16 16 N -0.49 -16.65 3.18 -539.27 -1.71 -18.37 16 17 C 0.08 1.61 11.03 127.77 1.41 3.02 16 18 C 0.08 3.11 6.81 39.03 0.27 3.37 16 19 C -0.13 -4.00 9.60 22.37 0.21 -3.78 16 20 C -0.07 -2.07 5.88 -19.84 -0.12 -2.18 16 21 C -0.10 -1.88 9.58 71.24 0.68 -1.20 16 22 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 23 H 0.09 1.77 5.90 -2.39 -0.01 1.75 16 24 H 0.05 1.44 8.08 -2.39 -0.02 1.42 16 25 H 0.09 4.42 8.06 -2.91 -0.02 4.39 16 26 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 27 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 28 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 29 H 0.18 6.30 8.06 -2.91 -0.02 6.27 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.10 1.53 8.10 -2.38 -0.02 1.51 16 32 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.14 8.08 -2.39 -0.02 1.12 16 36 H 0.08 1.27 5.90 -2.39 -0.01 1.26 16 Total: -1.00 -75.11 303.55 6.44 -68.67 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 1.05 Total: 8.03 kcal Atomic # 6 Polarization: -53.40 SS G_CDS: 4.79 Total: -48.61 kcal Atomic # 7 Polarization: -75.01 SS G_CDS: -1.43 Total: -76.44 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.34 kcal Total: -75.11 6.44 -68.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259601228.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.234 kcal (2) G-P(sol) polarization free energy of solvation -75.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds