Wall clock time and date at job start Mon Mar 30 2020 05:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00181 * 2 1 4 4 H 1.48495 * 109.47246 * 239.99741 * 3 2 1 5 5 H 1.48506 * 109.47010 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47319 * 119.99211 * 3 2 1 7 7 C 1.37882 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99622 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00189 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.23023 * 59.48439 * 9 7 2 11 11 N 1.46629 * 109.26810 * 300.00177 * 9 7 2 12 12 C 1.47158 * 110.26487 * 187.29373 * 11 9 7 13 13 C 1.52905 * 108.48687 * 71.27479 * 12 11 9 14 14 C 1.50717 * 109.94203 * 309.55512 * 13 12 11 15 15 C 1.38574 * 118.54676 * 196.89421 * 14 13 12 16 16 C 1.38271 * 120.56433 * 180.15095 * 15 14 13 17 17 C 1.38264 * 119.68110 * 359.97438 * 16 15 14 18 18 C 1.38260 * 119.71355 * 359.95753 * 17 16 15 19 19 C 1.37820 * 121.66878 * 16.91701 * 14 13 12 20 20 C 1.51382 * 109.73882 * 179.97438 * 17 16 15 21 21 C 1.54339 * 105.17148 * 17.22993 * 20 17 16 22 22 C 1.51368 * 130.55942 * 179.97438 * 16 15 14 23 23 H 0.96996 * 120.00013 * 0.02562 * 1 2 3 24 24 H 1.00901 * 111.00106 * 63.86467 * 11 9 7 25 25 H 1.08990 * 109.63716 * 190.97693 * 12 11 9 26 26 H 1.09006 * 109.63171 * 311.58180 * 12 11 9 27 27 H 1.08997 * 109.39499 * 69.70486 * 13 12 11 28 28 H 1.09004 * 109.39121 * 189.41253 * 13 12 11 29 29 H 1.07998 * 119.72205 * 0.07703 * 15 14 13 30 30 H 1.07998 * 119.69971 * 179.97438 * 18 17 16 31 31 H 1.09002 * 110.29693 * 136.15135 * 20 17 16 32 32 H 1.08992 * 110.30386 * 258.30044 * 20 17 16 33 33 H 1.08997 * 110.82709 * 91.85315 * 21 20 17 34 34 H 1.08998 * 110.81974 * 215.39834 * 21 20 17 35 35 H 1.09003 * 110.29716 * 43.95304 * 22 16 15 36 36 H 1.08993 * 110.38748 * 281.84518 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6193 -2.5491 -0.8864 11 7 0.4093 -2.5720 1.1989 12 6 -0.2024 -3.9056 1.3120 13 6 0.8884 -4.9089 1.6884 14 6 2.0645 -4.7630 0.7573 15 6 2.9918 -5.7909 0.6956 16 6 4.0883 -5.6994 -0.1419 17 6 4.2599 -4.5725 -0.9244 18 6 3.3335 -3.5480 -0.8632 19 6 2.2339 -3.6404 -0.0241 20 6 5.5234 -4.7089 -1.7470 21 6 5.8675 -6.2130 -1.7124 22 6 5.2242 -6.6697 -0.3858 23 1 -0.4850 0.8400 -0.0004 24 1 -0.2959 -1.8503 1.1898 25 1 -0.9702 -3.8921 2.0854 26 1 -0.6454 -4.1875 0.3567 27 1 1.2123 -4.7241 2.7125 28 1 0.4907 -5.9210 1.6132 29 1 2.8577 -6.6705 1.3077 30 1 3.4680 -2.6678 -1.4743 31 1 5.3439 -4.3854 -2.7723 32 1 6.3295 -4.1261 -1.3014 33 1 5.4196 -6.7326 -2.5595 34 1 6.9469 -6.3632 -1.6913 35 1 4.8399 -7.6851 -0.4826 36 1 5.9499 -6.6164 0.4257 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259601976.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:22 Heat of formation + Delta-G solvation = 11.150567 kcal Electronic energy + Delta-G solvation = -17382.634167 eV Core-core repulsion = 14830.175213 eV Total energy + Delta-G solvation = -2552.458954 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.76817 -37.18670 -33.97288 -32.97905 -31.35468 -29.26355 -28.62860 -26.21011 -25.42531 -22.84396 -21.52343 -21.01949 -20.28928 -17.90866 -16.52877 -15.56638 -15.40218 -15.22306 -14.35525 -14.29372 -13.55656 -13.10061 -13.04154 -12.66014 -12.45529 -12.34812 -12.16463 -11.68303 -11.35094 -11.16376 -11.08289 -10.94998 -10.89872 -10.71532 -10.25311 -10.16818 -10.08181 -9.51545 -9.18856 -8.58544 -7.93971 -7.54368 -6.89974 -6.12211 -4.14263 2.07712 2.15306 3.30780 3.34949 3.38805 4.35294 4.48338 4.77576 4.91298 5.13350 5.16151 5.41505 5.59683 5.65989 5.68245 5.75613 5.88612 5.90569 5.98486 6.02639 6.07685 6.22114 6.24598 6.32498 6.33903 6.48813 6.56501 6.69001 6.85294 6.89793 7.15039 7.26713 7.34471 7.47715 7.75608 7.85431 8.19490 8.58736 8.94005 9.03913 9.53042 10.98606 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.023310 B = 0.008057 C = 0.006226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.910117 B = 3474.553001 C = 4496.320632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.498 4.498 8 H 0.064 0.936 9 C 0.245 3.755 10 H 0.012 0.988 11 N -0.676 5.676 12 C 0.048 3.952 13 C -0.068 4.068 14 C -0.083 4.083 15 C -0.116 4.116 16 C -0.124 4.124 17 C -0.113 4.113 18 C -0.093 4.093 19 C -0.032 4.032 20 C -0.078 4.078 21 C -0.119 4.119 22 C -0.074 4.074 23 H 0.265 0.735 24 H 0.364 0.636 25 H 0.058 0.942 26 H 0.017 0.983 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.124 0.876 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.030 -10.533 -1.030 12.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.536 4.536 8 H 0.082 0.918 9 C 0.137 3.863 10 H 0.029 0.971 11 N -0.312 5.312 12 C -0.083 4.083 13 C -0.105 4.105 14 C -0.084 4.084 15 C -0.134 4.134 16 C -0.124 4.124 17 C -0.113 4.113 18 C -0.112 4.112 19 C -0.033 4.033 20 C -0.115 4.115 21 C -0.157 4.157 22 C -0.111 4.111 23 H 0.075 0.925 24 H 0.188 0.812 25 H 0.077 0.923 26 H 0.035 0.965 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.124 0.876 30 H 0.142 0.858 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.382 -10.533 -0.605 12.330 hybrid contribution -0.281 0.962 -0.570 1.153 sum 6.100 -9.571 -1.175 11.410 Atomic orbital electron populations 1.69654 1.06048 1.27243 1.51126 1.24988 0.94926 0.99330 0.94158 0.86519 0.79495 0.82488 0.78681 1.20268 1.21281 1.20102 1.21120 0.93013 0.89275 1.50236 0.91828 1.17990 0.89490 0.90461 0.88318 0.97130 1.61069 1.25880 1.02003 1.42241 1.21896 0.94978 0.93045 0.98349 1.20449 0.93764 0.98017 0.98277 1.19518 0.96728 0.93802 0.98319 1.20370 0.94545 0.98686 0.99823 1.20253 0.96337 0.96791 0.99055 1.20415 0.96553 0.95205 0.99151 1.20683 0.93271 0.97610 0.99594 1.20145 0.95734 0.94392 0.93006 1.20958 0.94993 0.96212 0.99318 1.22265 1.00049 0.95876 0.97488 1.20915 0.95255 0.97622 0.97324 0.92507 0.81229 0.92336 0.96515 0.90941 0.92262 0.87560 0.85766 0.91265 0.90865 0.91376 0.91211 0.91667 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.99 11.52 55.43 0.64 -24.35 16 2 C 0.07 1.84 5.38 -17.82 -0.10 1.74 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.50 -13.63 7.97 -34.44 -0.27 -13.90 16 8 H 0.06 1.74 6.76 -52.48 -0.35 1.38 16 9 C 0.24 6.30 2.44 -70.20 -0.17 6.13 16 10 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 11 N -0.68 -16.56 6.43 -109.28 -0.70 -17.27 16 12 C 0.05 0.97 6.59 -3.73 -0.02 0.95 16 13 C -0.07 -1.25 5.95 -27.92 -0.17 -1.42 16 14 C -0.08 -1.72 5.77 -104.64 -0.60 -2.32 16 15 C -0.12 -2.10 9.65 -39.45 -0.38 -2.48 16 16 C -0.12 -2.15 6.14 -104.27 -0.64 -2.79 16 17 C -0.11 -2.08 6.14 -104.27 -0.64 -2.72 16 18 C -0.09 -2.00 8.73 -39.43 -0.34 -2.34 16 19 C -0.03 -0.74 5.46 -104.67 -0.57 -1.31 16 20 C -0.08 -1.11 6.77 -26.85 -0.18 -1.30 16 21 C -0.12 -1.42 7.08 -25.32 -0.18 -1.60 16 22 C -0.07 -0.98 6.77 -26.85 -0.18 -1.16 16 23 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 24 H 0.36 9.44 6.87 -39.29 -0.27 9.17 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 27 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.12 2.70 7.10 -52.49 -0.37 2.33 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 286.20 15.07 4.31 4.31 Total: -1.00 -28.53 286.20 -10.43 -38.95 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.20 Total: 6.69 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -4.46 Total: -24.52 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: -0.06 Total: -41.61 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.53 -10.43 -38.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259601976.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.105 kcal (2) G-P(sol) polarization free energy of solvation -28.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds