Wall clock time and date at job start Mon Mar 30 2020 05:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00181 * 2 1 4 4 H 1.48495 * 109.47246 * 239.99741 * 3 2 1 5 5 H 1.48506 * 109.47010 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47319 * 119.99211 * 3 2 1 7 7 C 1.37882 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99622 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00189 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.23023 * 59.48439 * 9 7 2 11 11 N 1.46629 * 109.26810 * 300.00177 * 9 7 2 12 12 C 1.47158 * 110.26487 * 187.29373 * 11 9 7 13 13 C 1.52905 * 108.48687 * 71.27479 * 12 11 9 14 14 C 1.50717 * 109.94203 * 309.55512 * 13 12 11 15 15 C 1.38574 * 118.54676 * 196.89421 * 14 13 12 16 16 C 1.38271 * 120.56433 * 180.15095 * 15 14 13 17 17 C 1.38264 * 119.68110 * 359.97438 * 16 15 14 18 18 C 1.38260 * 119.71355 * 359.95753 * 17 16 15 19 19 C 1.37820 * 121.66878 * 16.91701 * 14 13 12 20 20 C 1.51382 * 109.73882 * 179.97438 * 17 16 15 21 21 C 1.54339 * 105.17148 * 17.22993 * 20 17 16 22 22 C 1.51368 * 130.55942 * 179.97438 * 16 15 14 23 23 H 0.96996 * 120.00013 * 0.02562 * 1 2 3 24 24 H 1.00901 * 111.00106 * 63.86467 * 11 9 7 25 25 H 1.08990 * 109.63716 * 190.97693 * 12 11 9 26 26 H 1.09006 * 109.63171 * 311.58180 * 12 11 9 27 27 H 1.08997 * 109.39499 * 69.70486 * 13 12 11 28 28 H 1.09004 * 109.39121 * 189.41253 * 13 12 11 29 29 H 1.07998 * 119.72205 * 0.07703 * 15 14 13 30 30 H 1.07998 * 119.69971 * 179.97438 * 18 17 16 31 31 H 1.09002 * 110.29693 * 136.15135 * 20 17 16 32 32 H 1.08992 * 110.30386 * 258.30044 * 20 17 16 33 33 H 1.08997 * 110.82709 * 91.85315 * 21 20 17 34 34 H 1.08998 * 110.81974 * 215.39834 * 21 20 17 35 35 H 1.09003 * 110.29716 * 43.95304 * 22 16 15 36 36 H 1.08993 * 110.38748 * 281.84518 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6193 -2.5491 -0.8864 11 7 0.4093 -2.5720 1.1989 12 6 -0.2024 -3.9056 1.3120 13 6 0.8884 -4.9089 1.6884 14 6 2.0645 -4.7630 0.7573 15 6 2.9918 -5.7909 0.6956 16 6 4.0883 -5.6994 -0.1419 17 6 4.2599 -4.5725 -0.9244 18 6 3.3335 -3.5480 -0.8632 19 6 2.2339 -3.6404 -0.0241 20 6 5.5234 -4.7089 -1.7470 21 6 5.8675 -6.2130 -1.7124 22 6 5.2242 -6.6697 -0.3858 23 1 -0.4850 0.8400 -0.0004 24 1 -0.2959 -1.8503 1.1898 25 1 -0.9702 -3.8921 2.0854 26 1 -0.6454 -4.1875 0.3567 27 1 1.2123 -4.7241 2.7125 28 1 0.4907 -5.9210 1.6132 29 1 2.8577 -6.6705 1.3077 30 1 3.4680 -2.6678 -1.4743 31 1 5.3439 -4.3854 -2.7723 32 1 6.3295 -4.1261 -1.3014 33 1 5.4196 -6.7326 -2.5595 34 1 6.9469 -6.3632 -1.6913 35 1 4.8399 -7.6851 -0.4826 36 1 5.9499 -6.6164 0.4257 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259601976.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:22 Heat of formation + Delta-G solvation = -5.177006 kcal Electronic energy + Delta-G solvation = -17383.342183 eV Core-core repulsion = 14830.175213 eV Total energy + Delta-G solvation = -2553.166971 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.21568 -38.69442 -35.59714 -34.70954 -33.10389 -30.75214 -30.11239 -27.57284 -27.29063 -24.42560 -23.10230 -22.68711 -21.41854 -19.47338 -18.53959 -17.32583 -16.83847 -16.42585 -16.11670 -15.83712 -15.15832 -14.85270 -14.68256 -14.03563 -13.99333 -13.80141 -13.61533 -13.19437 -12.85630 -12.71936 -12.68749 -12.53031 -12.31208 -12.03864 -11.95126 -11.73975 -11.40736 -11.21405 -11.04000 -10.66147 -9.47321 -9.06612 -8.80979 -8.19805 -6.30467 0.57998 0.63253 1.39469 1.41812 1.49453 2.39718 2.91634 3.07376 3.58478 3.75929 3.94785 4.05574 4.22386 4.25036 4.25393 4.40965 4.56517 4.63601 4.69744 4.76200 4.85522 4.89597 4.96075 5.00340 5.02769 5.07801 5.17364 5.26080 5.38601 5.40187 5.46499 5.64837 5.72807 5.82721 5.84844 6.16463 6.36850 6.58029 6.89747 7.03991 7.40149 8.89146 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.023310 B = 0.008057 C = 0.006226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.910117 B = 3474.553001 C = 4496.320632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.022 3.978 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.251 3.749 10 H -0.036 1.036 11 N -0.686 5.686 12 C 0.045 3.955 13 C -0.062 4.062 14 C -0.100 4.100 15 C -0.116 4.116 16 C -0.121 4.121 17 C -0.122 4.122 18 C -0.117 4.117 19 C -0.072 4.072 20 C -0.081 4.081 21 C -0.110 4.110 22 C -0.072 4.072 23 H 0.267 0.733 24 H 0.350 0.650 25 H 0.083 0.917 26 H 0.006 0.994 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.141 0.859 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.037 -12.800 -0.446 15.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.178 4.178 3 Si 0.788 3.212 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.557 4.557 8 H 0.072 0.928 9 C 0.143 3.857 10 H -0.019 1.019 11 N -0.320 5.320 12 C -0.085 4.085 13 C -0.099 4.099 14 C -0.100 4.100 15 C -0.134 4.134 16 C -0.121 4.121 17 C -0.122 4.122 18 C -0.136 4.136 19 C -0.073 4.073 20 C -0.118 4.118 21 C -0.147 4.147 22 C -0.109 4.109 23 H 0.076 0.924 24 H 0.171 0.829 25 H 0.101 0.899 26 H 0.025 0.975 27 H 0.096 0.904 28 H 0.114 0.886 29 H 0.159 0.841 30 H 0.120 0.880 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.106 0.894 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.396 -12.820 -0.022 15.325 hybrid contribution -0.897 1.602 -0.777 1.994 sum 7.499 -11.218 -0.799 13.517 Atomic orbital electron populations 1.69769 1.07143 1.27962 1.51424 1.25757 0.95810 1.02451 0.93756 0.85539 0.78360 0.78591 0.78684 1.19622 1.20418 1.19983 1.21357 0.92806 0.90808 1.50688 0.92776 1.17746 0.89589 0.91502 0.86909 1.01901 1.61031 1.25870 1.03745 1.41364 1.22059 0.96352 0.91436 0.98681 1.20480 0.92438 0.99137 0.97884 1.19809 0.98241 0.93647 0.98315 1.20713 0.93891 0.98809 0.99940 1.20896 0.96841 0.97118 0.97199 1.20868 0.97146 0.94484 0.99751 1.20640 0.94545 0.98354 1.00042 1.20038 0.96368 0.94979 0.95875 1.21106 0.93098 0.98782 0.98831 1.22302 1.01990 0.93260 0.97153 1.21045 0.93860 0.97478 0.98472 0.92389 0.82887 0.89885 0.97541 0.90382 0.88601 0.84101 0.88047 0.90899 0.90061 0.90510 0.88179 0.89391 0.89410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.35 11.52 21.45 0.25 -53.11 16 2 C 0.02 1.21 5.38 84.66 0.46 1.67 16 3 Si 0.96 44.73 29.54 68.60 2.03 46.75 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.52 -30.02 7.97 25.60 0.20 -29.81 16 8 H 0.05 3.14 6.76 -2.91 -0.02 3.12 16 9 C 0.25 13.76 2.44 43.45 0.11 13.86 16 10 H -0.04 -2.21 8.14 -2.38 -0.02 -2.23 16 11 N -0.69 -35.14 6.43 -499.66 -3.21 -38.35 16 12 C 0.04 1.83 6.59 86.22 0.57 2.40 16 13 C -0.06 -2.22 5.95 29.82 0.18 -2.04 16 14 C -0.10 -4.07 5.77 -19.88 -0.11 -4.18 16 15 C -0.12 -3.89 9.65 22.36 0.22 -3.68 16 16 C -0.12 -3.84 6.14 -19.64 -0.12 -3.96 16 17 C -0.12 -4.41 6.14 -19.64 -0.12 -4.53 16 18 C -0.12 -5.26 8.73 22.37 0.20 -5.07 16 19 C -0.07 -3.47 5.46 -19.89 -0.11 -3.58 16 20 C -0.08 -2.15 6.77 30.52 0.21 -1.94 16 21 C -0.11 -2.12 7.08 31.51 0.22 -1.90 16 22 C -0.07 -1.55 6.77 30.52 0.21 -1.35 16 23 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 24 H 0.35 19.11 6.87 -89.69 -0.62 18.50 16 25 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 26 H 0.01 0.27 8.05 -2.38 -0.02 0.25 16 27 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 30 H 0.10 4.81 7.10 -2.91 -0.02 4.79 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -65.61 286.20 1.61 -64.00 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.46 Total: 24.81 kcal Atomic # 6 Polarization: -46.20 SS G_CDS: 2.09 Total: -44.11 kcal Atomic # 7 Polarization: -88.49 SS G_CDS: -2.97 Total: -91.46 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -65.61 1.61 -64.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259601976.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.827 kcal (2) G-P(sol) polarization free energy of solvation -65.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds