Wall clock time and date at job start Mon Mar 30 2020 05:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00240 * 2 1 4 4 H 1.48502 * 109.47408 * 240.00246 * 3 2 1 5 5 H 1.48496 * 109.47002 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46865 * 120.00148 * 3 2 1 7 7 C 1.37885 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00288 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99835 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.29889 * 299.58843 * 9 7 2 11 11 N 1.46640 * 109.30342 * 58.96527 * 9 7 2 12 12 C 1.47166 * 110.23501 * 172.89237 * 11 9 7 13 13 C 1.52892 * 108.51200 * 288.73005 * 12 11 9 14 14 C 1.50721 * 109.97111 * 50.34145 * 13 12 11 15 15 C 1.38570 * 118.56279 * 163.33846 * 14 13 12 16 16 C 1.38274 * 120.57136 * 179.68690 * 15 14 13 17 17 C 1.38266 * 119.67703 * 0.07658 * 16 15 14 18 18 C 1.38257 * 119.71170 * 0.03710 * 17 16 15 19 19 C 1.37825 * 121.65835 * 343.16722 * 14 13 12 20 20 C 1.51681 * 109.82860 * 180.20707 * 17 16 15 21 21 C 1.54346 * 105.02395 * 16.90614 * 20 17 16 22 22 C 1.51357 * 130.57272 * 180.09996 * 16 15 14 23 23 H 0.96997 * 119.99718 * 359.97438 * 1 2 3 24 24 H 1.00905 * 110.99268 * 49.48598 * 11 9 7 25 25 H 1.08998 * 109.62738 * 48.43736 * 12 11 9 26 26 H 1.08999 * 109.62944 * 168.82770 * 12 11 9 27 27 H 1.08997 * 109.38803 * 170.49252 * 13 12 11 28 28 H 1.09000 * 109.38875 * 290.18634 * 13 12 11 29 29 H 1.08006 * 119.71587 * 359.67229 * 15 14 13 30 30 H 1.08004 * 119.70336 * 179.97438 * 18 17 16 31 31 H 1.08999 * 110.25017 * 258.09318 * 20 17 16 32 32 H 1.09001 * 110.49645 * 135.84213 * 20 17 16 33 33 H 1.09002 * 110.82237 * 215.55668 * 21 20 17 34 34 H 1.09005 * 110.81964 * 92.20502 * 21 20 17 35 35 H 1.09005 * 110.30224 * 43.83119 * 22 16 15 36 36 H 1.09007 * 110.38611 * 281.72354 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6307 -2.5578 0.8926 11 7 0.3912 -2.5615 -1.1879 12 6 -0.2249 -3.8932 -1.3007 13 6 0.8573 -4.8965 -1.7000 14 6 2.0492 -4.7584 -0.7879 15 6 2.9776 -5.7865 -0.7507 16 6 4.0899 -5.7004 0.0664 17 6 4.2757 -4.5792 0.8538 18 6 3.3476 -3.5550 0.8178 19 6 2.2331 -3.6412 -0.0021 20 6 5.5592 -4.7168 1.6503 21 6 6.3492 -5.8396 0.9451 22 6 5.2311 -6.6711 0.2812 23 1 -0.4849 0.8400 0.0004 24 1 0.9094 -2.3309 -2.0225 25 1 -0.6543 -4.1803 -0.3409 26 1 -1.0067 -3.8718 -2.0599 27 1 0.4587 -5.9082 -1.6239 28 1 1.1648 -4.7069 -2.7284 29 1 2.8312 -6.6627 -1.3649 30 1 3.4927 -2.6794 1.4333 31 1 5.3363 -4.9998 2.6791 32 1 6.1243 -3.7850 1.6275 33 1 6.9001 -6.4396 1.6695 34 1 7.0229 -5.4266 0.1943 35 1 5.5729 -7.0702 -0.6739 36 1 4.9208 -7.4821 0.9401 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259601980.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:25 Heat of formation + Delta-G solvation = 13.832394 kcal Electronic energy + Delta-G solvation = -17398.074250 eV Core-core repulsion = 14845.731588 eV Total energy + Delta-G solvation = -2552.342661 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.85694 -37.33734 -33.87473 -33.01111 -31.36013 -29.24492 -28.52185 -26.21747 -25.29092 -22.78664 -21.70407 -21.02549 -20.31638 -18.41416 -16.52426 -15.55083 -15.36067 -14.86600 -14.51641 -14.17023 -13.71786 -13.27088 -12.82157 -12.68942 -12.45428 -12.42892 -12.05463 -11.70097 -11.54926 -11.11735 -11.00354 -10.87508 -10.85080 -10.70731 -10.37444 -10.18590 -10.05553 -9.79788 -9.05605 -8.46814 -7.94956 -7.53546 -6.92074 -5.90187 -4.05385 1.99876 2.09794 3.34197 3.39293 3.41783 4.34192 4.48879 4.74109 4.86616 5.12510 5.26459 5.34015 5.56926 5.59862 5.63124 5.76262 5.80876 5.85569 5.90565 5.98051 6.02147 6.10515 6.15853 6.23917 6.29556 6.45870 6.54571 6.67769 6.82553 6.85155 7.12063 7.24766 7.38451 7.44593 7.73871 7.89236 8.18912 8.55672 8.91014 9.07902 9.62868 11.13482 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.022965 B = 0.008155 C = 0.006259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.950242 B = 3432.728326 C = 4472.546901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.082 3.918 3 Si 0.885 3.115 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.537 4.537 8 H 0.059 0.941 9 C 0.250 3.750 10 H 0.052 0.948 11 N -0.641 5.641 12 C 0.051 3.949 13 C -0.112 4.112 14 C -0.096 4.096 15 C -0.114 4.114 16 C -0.124 4.124 17 C -0.112 4.112 18 C -0.089 4.089 19 C -0.069 4.069 20 C -0.078 4.078 21 C -0.120 4.120 22 C -0.074 4.074 23 H 0.258 0.742 24 H 0.326 0.674 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.126 0.874 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.051 -10.834 -0.011 12.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.125 4.125 3 Si 0.712 3.288 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.575 4.575 8 H 0.077 0.923 9 C 0.142 3.858 10 H 0.070 0.930 11 N -0.267 5.267 12 C -0.080 4.080 13 C -0.151 4.151 14 C -0.096 4.096 15 C -0.132 4.132 16 C -0.125 4.125 17 C -0.112 4.112 18 C -0.107 4.107 19 C -0.071 4.071 20 C -0.115 4.115 21 C -0.157 4.157 22 C -0.111 4.111 23 H 0.067 0.933 24 H 0.143 0.857 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.123 0.877 30 H 0.144 0.856 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.285 -10.403 0.303 12.158 hybrid contribution 1.263 0.265 -0.385 1.346 sum 7.548 -10.138 -0.082 12.640 Atomic orbital electron populations 1.70104 1.05625 1.25963 1.46297 1.24984 0.94671 0.98633 0.94194 0.86809 0.79752 0.83653 0.78578 1.20331 1.21317 1.20330 1.20973 0.92389 0.89453 1.54727 0.92324 1.18190 0.87382 0.89240 0.91010 0.93018 1.61343 1.37293 1.22069 1.06038 1.22079 0.95514 0.89898 1.00498 1.21201 0.95324 1.00799 0.97821 1.19531 0.96576 0.94346 0.99188 1.20365 0.94306 0.98614 0.99909 1.20256 0.96462 0.96629 0.99103 1.20560 0.96779 0.95228 0.98665 1.20759 0.93098 0.97456 0.99417 1.21197 0.96654 0.95990 0.93290 1.21023 0.93303 0.98864 0.98345 1.22264 0.97091 0.96912 0.99448 1.20916 0.93105 0.96806 1.00295 0.93251 0.85656 0.92040 0.92066 0.92030 0.91684 0.87682 0.85637 0.90907 0.91117 0.91206 0.91353 0.91643 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.12 12.72 55.43 0.70 -23.42 16 2 C 0.08 2.25 5.38 -17.82 -0.10 2.15 16 3 Si 0.88 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.54 -14.42 7.85 -34.44 -0.27 -14.69 16 8 H 0.06 1.57 6.71 -52.49 -0.35 1.22 16 9 C 0.25 6.23 2.40 -70.20 -0.17 6.06 16 10 H 0.05 1.44 8.14 -51.93 -0.42 1.02 16 11 N -0.64 -15.14 5.88 -109.28 -0.64 -15.79 16 12 C 0.05 0.99 6.62 -3.73 -0.02 0.96 16 13 C -0.11 -1.96 5.82 -27.93 -0.16 -2.13 16 14 C -0.10 -1.90 5.77 -104.64 -0.60 -2.50 16 15 C -0.11 -2.02 9.65 -39.45 -0.38 -2.40 16 16 C -0.12 -2.12 6.14 -104.28 -0.64 -2.76 16 17 C -0.11 -2.03 6.15 -104.12 -0.64 -2.67 16 18 C -0.09 -1.86 8.73 -39.43 -0.34 -2.20 16 19 C -0.07 -1.53 5.46 -104.67 -0.57 -2.10 16 20 C -0.08 -1.11 6.80 -26.69 -0.18 -1.29 16 21 C -0.12 -1.42 7.07 -25.32 -0.18 -1.60 16 22 C -0.07 -0.97 6.77 -26.85 -0.18 -1.15 16 23 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 24 H 0.33 7.74 8.55 -39.29 -0.34 7.41 16 25 H 0.06 1.23 8.05 -51.93 -0.42 0.81 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 30 H 0.13 2.70 7.08 -52.48 -0.37 2.32 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 LS Contribution 288.23 15.07 4.34 4.34 Total: -1.00 -28.60 288.23 -10.32 -38.92 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -5.26 Total: 6.29 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: -4.44 Total: -26.32 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.06 Total: -39.20 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.60 -10.32 -38.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259601980.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.756 kcal (2) G-P(sol) polarization free energy of solvation -28.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds