Wall clock time and date at job start Mon Mar 30 2020 05:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00240 * 2 1 4 4 H 1.48502 * 109.47408 * 240.00246 * 3 2 1 5 5 H 1.48496 * 109.47002 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46865 * 120.00148 * 3 2 1 7 7 C 1.37885 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00288 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99835 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.29889 * 299.58843 * 9 7 2 11 11 N 1.46640 * 109.30342 * 58.96527 * 9 7 2 12 12 C 1.47166 * 110.23501 * 172.89237 * 11 9 7 13 13 C 1.52892 * 108.51200 * 288.73005 * 12 11 9 14 14 C 1.50721 * 109.97111 * 50.34145 * 13 12 11 15 15 C 1.38570 * 118.56279 * 163.33846 * 14 13 12 16 16 C 1.38274 * 120.57136 * 179.68690 * 15 14 13 17 17 C 1.38266 * 119.67703 * 0.07658 * 16 15 14 18 18 C 1.38257 * 119.71170 * 0.03710 * 17 16 15 19 19 C 1.37825 * 121.65835 * 343.16722 * 14 13 12 20 20 C 1.51681 * 109.82860 * 180.20707 * 17 16 15 21 21 C 1.54346 * 105.02395 * 16.90614 * 20 17 16 22 22 C 1.51357 * 130.57272 * 180.09996 * 16 15 14 23 23 H 0.96997 * 119.99718 * 359.97438 * 1 2 3 24 24 H 1.00905 * 110.99268 * 49.48598 * 11 9 7 25 25 H 1.08998 * 109.62738 * 48.43736 * 12 11 9 26 26 H 1.08999 * 109.62944 * 168.82770 * 12 11 9 27 27 H 1.08997 * 109.38803 * 170.49252 * 13 12 11 28 28 H 1.09000 * 109.38875 * 290.18634 * 13 12 11 29 29 H 1.08006 * 119.71587 * 359.67229 * 15 14 13 30 30 H 1.08004 * 119.70336 * 179.97438 * 18 17 16 31 31 H 1.08999 * 110.25017 * 258.09318 * 20 17 16 32 32 H 1.09001 * 110.49645 * 135.84213 * 20 17 16 33 33 H 1.09002 * 110.82237 * 215.55668 * 21 20 17 34 34 H 1.09005 * 110.81964 * 92.20502 * 21 20 17 35 35 H 1.09005 * 110.30224 * 43.83119 * 22 16 15 36 36 H 1.09007 * 110.38611 * 281.72354 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6307 -2.5578 0.8926 11 7 0.3912 -2.5615 -1.1879 12 6 -0.2249 -3.8932 -1.3007 13 6 0.8573 -4.8965 -1.7000 14 6 2.0492 -4.7584 -0.7879 15 6 2.9776 -5.7865 -0.7507 16 6 4.0899 -5.7004 0.0664 17 6 4.2757 -4.5792 0.8538 18 6 3.3476 -3.5550 0.8178 19 6 2.2331 -3.6412 -0.0021 20 6 5.5592 -4.7168 1.6503 21 6 6.3492 -5.8396 0.9451 22 6 5.2311 -6.6711 0.2812 23 1 -0.4849 0.8400 0.0004 24 1 0.9094 -2.3309 -2.0225 25 1 -0.6543 -4.1803 -0.3409 26 1 -1.0067 -3.8718 -2.0599 27 1 0.4587 -5.9082 -1.6239 28 1 1.1648 -4.7069 -2.7284 29 1 2.8312 -6.6627 -1.3649 30 1 3.4927 -2.6794 1.4333 31 1 5.3363 -4.9998 2.6791 32 1 6.1243 -3.7850 1.6275 33 1 6.9001 -6.4396 1.6695 34 1 7.0229 -5.4266 0.1943 35 1 5.5729 -7.0702 -0.6739 36 1 4.9208 -7.4821 0.9401 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259601980.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:24 Heat of formation + Delta-G solvation = -2.418487 kcal Electronic energy + Delta-G solvation = -17398.778941 eV Core-core repulsion = 14845.731588 eV Total energy + Delta-G solvation = -2553.047352 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.28652 -38.79619 -35.42671 -34.75375 -33.09744 -30.70967 -29.95473 -27.55813 -27.15968 -24.32405 -23.27737 -22.66737 -21.43783 -19.96382 -18.52498 -16.97491 -16.70261 -16.40412 -16.10130 -15.74624 -15.29776 -14.98176 -14.34245 -14.10136 -13.98851 -13.70077 -13.51743 -13.34503 -12.92540 -12.72187 -12.64779 -12.43511 -12.22630 -12.00427 -11.94093 -11.72927 -11.63678 -11.39266 -10.94300 -10.56569 -9.43562 -9.03421 -8.69718 -7.99608 -6.21501 0.53750 0.61049 1.42583 1.43216 1.50950 2.44666 2.89346 3.21434 3.56190 3.72175 3.96956 4.05154 4.18693 4.21553 4.28371 4.34614 4.43989 4.59495 4.66768 4.73771 4.83257 4.88175 4.98556 5.00819 5.03285 5.12204 5.15183 5.36028 5.39260 5.40690 5.43490 5.65244 5.74585 5.80238 5.82554 6.16723 6.32593 6.62285 7.04704 7.06318 7.50006 9.03163 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.022965 B = 0.008155 C = 0.006259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.950242 B = 3432.728326 C = 4472.546901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.035 3.965 3 Si 0.949 3.051 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.051 0.949 9 C 0.258 3.742 10 H 0.004 0.996 11 N -0.660 5.660 12 C 0.051 3.949 13 C -0.102 4.102 14 C -0.108 4.108 15 C -0.115 4.115 16 C -0.121 4.121 17 C -0.123 4.123 18 C -0.113 4.113 19 C -0.103 4.103 20 C -0.081 4.081 21 C -0.111 4.111 22 C -0.072 4.072 23 H 0.257 0.743 24 H 0.323 0.677 25 H 0.047 0.953 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.138 0.862 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.095 -13.121 -0.771 15.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.169 4.169 3 Si 0.774 3.226 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.586 4.586 8 H 0.069 0.931 9 C 0.149 3.851 10 H 0.021 0.979 11 N -0.287 5.287 12 C -0.079 4.079 13 C -0.141 4.141 14 C -0.108 4.108 15 C -0.133 4.133 16 C -0.121 4.121 17 C -0.123 4.123 18 C -0.132 4.132 19 C -0.105 4.105 20 C -0.118 4.118 21 C -0.148 4.148 22 C -0.109 4.109 23 H 0.066 0.934 24 H 0.139 0.861 25 H 0.065 0.935 26 H 0.100 0.900 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.156 0.844 30 H 0.120 0.880 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.339 -12.703 -0.454 15.202 hybrid contribution 0.642 0.894 -0.106 1.106 sum 8.981 -11.809 -0.560 14.847 Atomic orbital electron populations 1.70237 1.06998 1.26578 1.47606 1.25702 0.95447 1.01807 0.93932 0.85794 0.78510 0.79654 0.78633 1.19881 1.20857 1.19878 1.21238 0.92224 0.90908 1.54182 0.93096 1.17769 0.87426 0.90105 0.89769 0.97859 1.61127 1.37181 1.25181 1.05202 1.22110 0.96518 0.88710 1.00527 1.21121 0.93672 1.01533 0.97778 1.19800 0.97977 0.94012 0.99023 1.20702 0.93775 0.98773 1.00056 1.20879 0.97044 0.96938 0.97280 1.20988 0.97472 0.94583 0.99217 1.20698 0.94409 0.98159 0.99945 1.20951 0.97071 0.96506 0.96021 1.21164 0.91701 1.00231 0.98744 1.22300 0.96655 0.95931 0.99957 1.21041 0.91554 0.96331 1.01935 0.93402 0.86067 0.93452 0.90022 0.88943 0.90416 0.84436 0.88033 0.89745 0.91102 0.88096 0.90839 0.89648 0.89225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.20 12.72 21.45 0.27 -51.93 16 2 C 0.04 1.98 5.38 84.66 0.46 2.44 16 3 Si 0.95 44.39 29.54 68.60 2.03 46.41 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.55 -30.97 7.85 25.60 0.20 -30.77 16 8 H 0.05 2.88 6.71 -2.92 -0.02 2.86 16 9 C 0.26 13.69 2.40 43.45 0.10 13.79 16 10 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 11 N -0.66 -32.50 5.88 -499.65 -2.94 -35.44 16 12 C 0.05 2.02 6.62 86.22 0.57 2.59 16 13 C -0.10 -3.42 5.82 29.82 0.17 -3.24 16 14 C -0.11 -4.19 5.77 -19.88 -0.11 -4.30 16 15 C -0.12 -3.78 9.65 22.36 0.22 -3.56 16 16 C -0.12 -3.80 6.14 -19.64 -0.12 -3.92 16 17 C -0.12 -4.33 6.15 -19.54 -0.12 -4.45 16 18 C -0.11 -4.96 8.73 22.37 0.20 -4.77 16 19 C -0.10 -4.76 5.46 -19.89 -0.11 -4.87 16 20 C -0.08 -2.13 6.80 30.62 0.21 -1.92 16 21 C -0.11 -2.16 7.07 31.51 0.22 -1.94 16 22 C -0.07 -1.54 6.77 30.51 0.21 -1.33 16 23 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 24 H 0.32 15.87 8.55 -89.69 -0.77 15.10 16 25 H 0.05 1.96 8.05 -2.39 -0.02 1.94 16 26 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 27 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 30 H 0.10 4.74 7.08 -2.91 -0.02 4.72 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -65.20 288.23 1.76 -63.45 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 0.31 Total: 23.77 kcal Atomic # 6 Polarization: -48.36 SS G_CDS: 2.09 Total: -46.27 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: -2.67 Total: -87.36 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -65.20 1.76 -63.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259601980.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.027 kcal (2) G-P(sol) polarization free energy of solvation -65.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds