Wall clock time and date at job start Mon Mar 30 2020 05:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99895 * 2 1 4 4 H 1.48502 * 109.47469 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47509 * 300.00325 * 3 2 1 6 6 H 1.48500 * 109.47464 * 60.00155 * 3 2 1 7 7 C 1.37876 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99596 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00163 * 359.97438 * 7 2 1 10 10 H 1.08990 * 110.58437 * 57.01502 * 9 7 2 11 11 C 1.54836 * 110.62660 * 293.83583 * 9 7 2 12 12 C 1.54051 * 106.50886 * 218.30206 * 11 9 7 13 13 C 1.55407 * 106.25865 * 357.64192 * 12 11 9 14 14 H 1.09001 * 112.49442 * 147.75211 * 13 12 11 15 15 C 1.52941 * 106.21217 * 270.92133 * 13 12 11 16 16 C 1.49191 * 113.18493 * 154.58615 * 15 13 12 17 17 C 1.38619 * 118.77148 * 159.08133 * 16 15 13 18 18 C 1.38091 * 120.35876 * 179.29221 * 17 16 15 19 19 C 1.38318 * 120.19737 * 0.08359 * 18 17 16 20 20 C 1.38039 * 119.85895 * 0.37161 * 19 18 17 21 21 C 1.38537 * 121.84639 * 339.21523 * 16 15 13 22 22 N 1.39510 * 120.25512 * 1.27781 * 21 16 15 23 23 C 1.44455 * 121.90945 * 351.68127 * 22 21 16 24 24 H 1.08997 * 109.53411 * 155.29583 * 23 22 21 25 25 H 0.97000 * 119.99843 * 359.97438 * 1 2 3 26 26 H 1.09001 * 110.05153 * 99.04977 * 11 9 7 27 27 H 1.09001 * 110.08750 * 337.56998 * 11 9 7 28 28 H 1.09002 * 110.10772 * 238.42368 * 12 11 9 29 29 H 1.09004 * 110.10548 * 116.85595 * 12 11 9 30 30 H 1.08999 * 108.82605 * 277.26258 * 15 13 12 31 31 H 1.09005 * 108.82756 * 35.57534 * 15 13 12 32 32 H 1.07994 * 119.81700 * 359.29044 * 17 16 15 33 33 H 1.07995 * 119.90338 * 180.02562 * 18 17 16 34 34 H 1.07996 * 120.07067 * 180.34148 * 19 18 17 35 35 H 1.07997 * 120.00601 * 179.91866 * 20 19 18 36 36 H 0.96994 * 119.04225 * 171.67212 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.5781 -2.5531 -0.8561 11 6 0.4717 -2.6791 1.3252 12 6 0.5771 -4.1706 1.6961 13 6 1.3683 -4.8504 0.5442 14 1 1.9755 -5.6862 0.8920 15 6 0.3289 -5.2815 -0.4915 16 6 0.8848 -5.3898 -1.8718 17 6 0.2130 -6.1667 -2.8026 18 6 0.6905 -6.2781 -4.0936 19 6 1.8456 -5.6156 -4.4677 20 6 2.5266 -4.8471 -3.5451 21 6 2.0502 -4.7394 -2.2435 22 7 2.7568 -3.9766 -1.3134 23 6 2.2260 -3.6885 -0.0011 24 1 3.0464 -3.4872 0.6877 25 1 -0.4850 0.8401 0.0004 26 1 -0.5731 -2.4019 1.1851 27 1 0.9190 -2.0670 2.1084 28 1 -0.4181 -4.6080 1.7762 29 1 1.1135 -4.2855 2.6380 30 1 -0.0983 -6.2363 -0.1849 31 1 -0.4664 -4.5366 -0.5229 32 1 -0.6887 -6.6877 -2.5166 33 1 0.1610 -6.8851 -4.8129 34 1 2.2142 -5.6997 -5.4793 35 1 3.4294 -4.3299 -3.8343 36 1 3.6299 -3.6298 -1.5548 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259643796.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:53 Heat of formation + Delta-G solvation = 8.085682 kcal Electronic energy + Delta-G solvation = -17681.767653 eV Core-core repulsion = 15129.175795 eV Total energy + Delta-G solvation = -2552.591858 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.92558 -37.39954 -33.88780 -33.03855 -31.60614 -29.46915 -28.16542 -26.95781 -24.18399 -23.66368 -22.03622 -21.23835 -19.19309 -17.85732 -17.02172 -16.32282 -15.86126 -14.97349 -14.51819 -14.14202 -13.75089 -13.56347 -13.03642 -12.78926 -12.59221 -12.10788 -12.05465 -11.74153 -11.28838 -11.02430 -10.89767 -10.72289 -10.57765 -10.24923 -10.20645 -9.93806 -9.78125 -9.47412 -8.90306 -8.74619 -8.39464 -8.19206 -6.65282 -6.01240 -4.04099 1.88212 2.15134 3.28004 3.36535 3.38917 4.19407 4.36573 4.42695 5.14973 5.31244 5.34435 5.45862 5.51349 5.53849 5.70350 5.89307 5.97772 6.07710 6.14161 6.18999 6.27646 6.43125 6.47609 6.55633 6.67499 6.78353 6.85346 6.92212 6.99660 7.09588 7.19793 7.22824 7.41752 7.64969 7.81241 7.99563 8.18817 8.36418 8.48748 8.98062 9.59494 11.08375 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.025130 B = 0.007930 C = 0.006826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.932469 B = 3530.171916 C = 4101.177264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.511 4.511 8 H 0.053 0.947 9 C 0.044 3.956 10 H 0.036 0.964 11 C -0.102 4.102 12 C -0.123 4.123 13 C -0.102 4.102 14 H 0.069 0.931 15 C -0.062 4.062 16 C -0.151 4.151 17 C -0.079 4.079 18 C -0.192 4.192 19 C -0.082 4.082 20 C -0.203 4.203 21 C 0.237 3.763 22 N -0.720 5.720 23 C 0.152 3.848 24 H 0.074 0.926 25 H 0.259 0.741 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.217 -10.712 -2.499 11.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.715 3.285 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.549 4.549 8 H 0.071 0.929 9 C 0.025 3.975 10 H 0.054 0.946 11 C -0.140 4.140 12 C -0.161 4.161 13 C -0.121 4.121 14 H 0.087 0.913 15 C -0.099 4.099 16 C -0.156 4.156 17 C -0.098 4.098 18 C -0.213 4.213 19 C -0.101 4.101 20 C -0.226 4.226 21 C 0.131 3.869 22 N -0.342 5.342 23 C 0.046 3.954 24 H 0.092 0.908 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 1.952 -10.540 -2.266 10.956 hybrid contribution 0.667 1.260 -0.136 1.432 sum 2.618 -9.281 -2.402 9.937 Atomic orbital electron populations 1.69979 1.05850 1.26279 1.50413 1.24961 0.94803 0.98932 0.95163 0.86624 0.80114 0.84215 0.77530 1.19901 1.21147 1.21089 1.21098 0.92544 0.90489 1.50759 0.92882 1.19728 0.92651 0.91351 0.93795 0.94570 1.22210 1.01047 0.91091 0.99701 1.22586 0.98432 0.98545 0.96540 1.22243 0.96685 0.97268 0.95927 0.91293 1.20039 0.98277 1.00925 0.90618 1.19039 0.97239 1.02544 0.96793 1.20804 0.98431 0.97497 0.93076 1.20645 0.98957 1.05162 0.96515 1.20712 0.95057 0.96165 0.98133 1.20544 1.03393 1.06351 0.92312 1.17518 0.91084 0.89582 0.88730 1.44000 1.20510 1.55755 1.13913 1.21480 0.96960 0.94958 0.82010 0.90828 0.93166 0.92681 0.92861 0.92922 0.93149 0.91967 0.90768 0.87007 0.87305 0.87000 0.86763 0.77424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.49 12.74 55.43 0.71 -24.79 16 2 C 0.06 1.74 5.36 -17.82 -0.10 1.65 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.51 -13.64 8.37 -34.44 -0.29 -13.93 16 8 H 0.05 1.39 7.77 -52.48 -0.41 0.99 16 9 C 0.04 1.07 1.94 -90.39 -0.18 0.89 16 10 H 0.04 1.00 7.69 -51.93 -0.40 0.60 16 11 C -0.10 -2.29 5.50 -25.21 -0.14 -2.43 16 12 C -0.12 -2.21 6.04 -24.90 -0.15 -2.36 16 13 C -0.10 -1.81 3.73 -88.65 -0.33 -2.14 16 14 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 15 C -0.06 -1.07 4.37 -28.63 -0.13 -1.20 16 16 C -0.15 -2.73 5.75 -105.09 -0.60 -3.33 16 17 C -0.08 -1.27 9.64 -39.49 -0.38 -1.65 16 18 C -0.19 -2.87 10.03 -39.61 -0.40 -3.26 16 19 C -0.08 -1.23 10.05 -39.63 -0.40 -1.62 16 20 C -0.20 -3.36 9.85 -39.36 -0.39 -3.74 16 21 C 0.24 4.37 6.56 -83.96 -0.55 3.82 16 22 N -0.72 -13.46 5.41 -52.44 -0.28 -13.74 16 23 C 0.15 3.03 2.92 -67.89 -0.20 2.83 16 24 H 0.07 1.46 8.05 -51.93 -0.42 1.04 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.05 1.33 8.13 -51.93 -0.42 0.91 16 27 H 0.05 1.26 7.84 -51.93 -0.41 0.85 16 28 H 0.05 0.87 7.76 -51.93 -0.40 0.47 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.94 8.11 -51.93 -0.42 0.52 16 31 H 0.07 1.44 7.03 -51.93 -0.37 1.07 16 32 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 34 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 35 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.39 6.70 8.79 -40.82 -0.36 6.34 16 LS Contribution 287.11 15.07 4.33 4.33 Total: -1.00 -28.67 287.11 -9.77 -38.43 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -5.27 Total: 6.03 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: -4.22 Total: -26.47 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.42 Total: -38.53 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.67 -9.77 -38.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259643796.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.520 kcal (2) G-P(sol) polarization free energy of solvation -28.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds