Wall clock time and date at job start Mon Mar 30 2020 05:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99895 * 2 1 4 4 H 1.48502 * 109.47469 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47509 * 300.00325 * 3 2 1 6 6 H 1.48500 * 109.47464 * 60.00155 * 3 2 1 7 7 C 1.37876 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99596 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00163 * 359.97438 * 7 2 1 10 10 H 1.08990 * 110.58437 * 57.01502 * 9 7 2 11 11 C 1.54836 * 110.62660 * 293.83583 * 9 7 2 12 12 C 1.54051 * 106.50886 * 218.30206 * 11 9 7 13 13 C 1.55407 * 106.25865 * 357.64192 * 12 11 9 14 14 H 1.09001 * 112.49442 * 147.75211 * 13 12 11 15 15 C 1.52941 * 106.21217 * 270.92133 * 13 12 11 16 16 C 1.49191 * 113.18493 * 154.58615 * 15 13 12 17 17 C 1.38619 * 118.77148 * 159.08133 * 16 15 13 18 18 C 1.38091 * 120.35876 * 179.29221 * 17 16 15 19 19 C 1.38318 * 120.19737 * 0.08359 * 18 17 16 20 20 C 1.38039 * 119.85895 * 0.37161 * 19 18 17 21 21 C 1.38537 * 121.84639 * 339.21523 * 16 15 13 22 22 N 1.39510 * 120.25512 * 1.27781 * 21 16 15 23 23 C 1.44455 * 121.90945 * 351.68127 * 22 21 16 24 24 H 1.08997 * 109.53411 * 155.29583 * 23 22 21 25 25 H 0.97000 * 119.99843 * 359.97438 * 1 2 3 26 26 H 1.09001 * 110.05153 * 99.04977 * 11 9 7 27 27 H 1.09001 * 110.08750 * 337.56998 * 11 9 7 28 28 H 1.09002 * 110.10772 * 238.42368 * 12 11 9 29 29 H 1.09004 * 110.10548 * 116.85595 * 12 11 9 30 30 H 1.08999 * 108.82605 * 277.26258 * 15 13 12 31 31 H 1.09005 * 108.82756 * 35.57534 * 15 13 12 32 32 H 1.07994 * 119.81700 * 359.29044 * 17 16 15 33 33 H 1.07995 * 119.90338 * 180.02562 * 18 17 16 34 34 H 1.07996 * 120.07067 * 180.34148 * 19 18 17 35 35 H 1.07997 * 120.00601 * 179.91866 * 20 19 18 36 36 H 0.96994 * 119.04225 * 171.67212 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.5781 -2.5531 -0.8561 11 6 0.4717 -2.6791 1.3252 12 6 0.5771 -4.1706 1.6961 13 6 1.3683 -4.8504 0.5442 14 1 1.9755 -5.6862 0.8920 15 6 0.3289 -5.2815 -0.4915 16 6 0.8848 -5.3898 -1.8718 17 6 0.2130 -6.1667 -2.8026 18 6 0.6905 -6.2781 -4.0936 19 6 1.8456 -5.6156 -4.4677 20 6 2.5266 -4.8471 -3.5451 21 6 2.0502 -4.7394 -2.2435 22 7 2.7568 -3.9766 -1.3134 23 6 2.2260 -3.6885 -0.0011 24 1 3.0464 -3.4872 0.6877 25 1 -0.4850 0.8401 0.0004 26 1 -0.5731 -2.4019 1.1851 27 1 0.9190 -2.0670 2.1084 28 1 -0.4181 -4.6080 1.7762 29 1 1.1135 -4.2855 2.6380 30 1 -0.0983 -6.2363 -0.1849 31 1 -0.4664 -4.5366 -0.5229 32 1 -0.6887 -6.6877 -2.5166 33 1 0.1610 -6.8851 -4.8129 34 1 2.2142 -5.6997 -5.4793 35 1 3.4294 -4.3299 -3.8343 36 1 3.6299 -3.6298 -1.5548 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259643796.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:53 Heat of formation + Delta-G solvation = -7.197201 kcal Electronic energy + Delta-G solvation = -17682.430368 eV Core-core repulsion = 15129.175795 eV Total energy + Delta-G solvation = -2553.254573 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.32931 -38.82849 -35.34570 -34.86541 -33.16066 -30.89835 -29.74706 -28.55751 -25.91856 -25.27638 -23.31528 -22.64080 -20.93945 -19.29251 -18.68629 -17.92530 -17.34932 -16.69927 -16.06712 -15.73607 -15.14445 -14.92299 -14.42363 -14.27633 -14.15871 -13.81336 -13.56810 -13.15281 -13.02191 -12.82148 -12.56621 -12.33413 -12.10505 -11.91752 -11.67002 -11.55597 -11.36349 -11.03638 -10.73672 -10.49832 -10.42512 -9.45270 -8.15859 -8.00880 -6.21219 0.63561 0.88998 1.36446 1.38630 1.48973 2.41133 2.80072 3.09782 3.20507 3.76200 3.99879 4.06312 4.19674 4.30314 4.43412 4.59232 4.62967 4.67164 4.74575 4.79339 4.85488 4.93387 5.07893 5.10803 5.21505 5.30576 5.36275 5.40761 5.51837 5.60635 5.64872 5.76722 5.85744 5.86996 5.98786 6.21614 6.36971 6.74408 6.90075 7.06701 7.45586 8.96960 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.025130 B = 0.007930 C = 0.006826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.932469 B = 3530.171916 C = 4101.177264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.950 3.050 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.281 1.281 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.044 3.956 10 H -0.010 1.010 11 C -0.095 4.095 12 C -0.112 4.112 13 C -0.094 4.094 14 H 0.095 0.905 15 C -0.058 4.058 16 C -0.177 4.177 17 C -0.086 4.086 18 C -0.190 4.190 19 C -0.083 4.083 20 C -0.213 4.213 21 C 0.207 3.793 22 N -0.726 5.726 23 C 0.158 3.842 24 H 0.075 0.925 25 H 0.258 0.742 26 H 0.024 0.976 27 H 0.034 0.966 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.044 0.956 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.125 0.875 36 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.024 -12.366 -3.063 13.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.189 4.189 3 Si 0.776 3.224 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.207 1.207 7 C -0.559 4.559 8 H 0.072 0.928 9 C 0.024 3.976 10 H 0.008 0.992 11 C -0.134 4.134 12 C -0.150 4.150 13 C -0.113 4.113 14 H 0.114 0.886 15 C -0.095 4.095 16 C -0.182 4.182 17 C -0.105 4.105 18 C -0.210 4.210 19 C -0.102 4.102 20 C -0.236 4.236 21 C 0.102 3.898 22 N -0.350 5.350 23 C 0.051 3.949 24 H 0.093 0.907 25 H 0.066 0.934 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.161 0.839 35 H 0.143 0.857 36 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.771 -12.214 -2.845 12.843 hybrid contribution 0.380 1.750 -0.073 1.793 sum 3.151 -10.464 -2.918 11.311 Atomic orbital electron populations 1.70119 1.07308 1.26871 1.51799 1.25750 0.95574 1.02364 0.95178 0.85632 0.79286 0.80142 0.77341 1.18851 1.21275 1.20661 1.21506 0.92794 0.91914 1.49722 0.92832 1.19599 0.92879 0.92501 0.92596 0.99207 1.22012 0.98581 0.94429 0.98418 1.22488 0.99967 0.94849 0.97665 1.22244 0.96456 0.97044 0.95553 0.88649 1.20015 0.97344 1.01305 0.90831 1.19295 0.97725 1.03583 0.97554 1.21133 0.98959 0.97101 0.93308 1.21077 0.98729 1.04558 0.96609 1.21130 0.94779 0.95039 0.99218 1.20829 1.04076 1.06738 0.91962 1.17865 0.91940 0.90417 0.89534 1.43904 1.20844 1.56491 1.13760 1.21230 0.96280 0.94259 0.83109 0.90707 0.93358 0.95698 0.94727 0.91282 0.90894 0.89228 0.93742 0.84904 0.84287 0.83939 0.85673 0.76980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.97 12.74 21.45 0.27 -54.70 16 2 C 0.01 0.54 5.36 84.65 0.45 1.00 16 3 Si 0.95 44.32 29.54 68.60 2.03 46.34 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 7 C -0.52 -28.60 8.37 25.60 0.21 -28.38 16 8 H 0.05 2.86 7.77 -2.91 -0.02 2.83 16 9 C 0.04 2.20 1.94 -10.65 -0.02 2.18 16 10 H -0.01 -0.61 7.69 -2.39 -0.02 -0.62 16 11 C -0.10 -4.44 5.50 31.58 0.17 -4.27 16 12 C -0.11 -3.90 6.04 31.78 0.19 -3.71 16 13 C -0.09 -3.20 3.73 -9.52 -0.04 -3.23 16 14 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 15 C -0.06 -1.97 4.37 29.36 0.13 -1.84 16 16 C -0.18 -6.22 5.75 -20.17 -0.12 -6.33 16 17 C -0.09 -2.58 9.64 22.33 0.22 -2.36 16 18 C -0.19 -5.08 10.03 22.25 0.22 -4.86 16 19 C -0.08 -2.27 10.05 22.24 0.22 -2.04 16 20 C -0.21 -6.78 9.85 22.41 0.22 -6.56 16 21 C 0.21 7.55 6.56 38.18 0.25 7.80 16 22 N -0.73 -27.22 5.41 -319.82 -1.73 -28.95 16 23 C 0.16 6.32 2.92 46.10 0.13 6.45 16 24 H 0.07 2.94 8.05 -2.39 -0.02 2.92 16 25 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 26 H 0.02 1.25 8.13 -2.39 -0.02 1.24 16 27 H 0.03 1.68 7.84 -2.39 -0.02 1.67 16 28 H 0.07 2.19 7.76 -2.39 -0.02 2.17 16 29 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.09 2.49 8.11 -2.39 -0.02 2.47 16 31 H 0.04 1.76 7.03 -2.38 -0.02 1.74 16 32 H 0.13 3.29 8.06 -2.91 -0.02 3.26 16 33 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 34 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 35 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 36 H 0.40 13.60 8.79 -92.71 -0.82 12.78 16 Total: -1.00 -63.73 287.11 3.08 -60.66 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.25 Total: 22.82 kcal Atomic # 6 Polarization: -48.42 SS G_CDS: 2.26 Total: -46.16 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -1.46 Total: -83.65 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -63.73 3.08 -60.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259643796.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.460 kcal (2) G-P(sol) polarization free energy of solvation -63.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds