Wall clock time and date at job start Mon Mar 30 2020 05:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99561 * 2 1 4 4 H 1.48501 * 109.47594 * 269.99649 * 3 2 1 5 5 H 1.48495 * 109.47223 * 30.00191 * 3 2 1 6 6 H 1.48508 * 109.46968 * 149.99831 * 3 2 1 7 7 C 1.37873 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00218 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99929 * 180.02562 * 7 2 1 10 10 H 1.09000 * 110.20716 * 60.44803 * 9 7 2 11 11 C 1.54804 * 110.23567 * 298.53951 * 9 7 2 12 12 C 1.55209 * 106.37567 * 237.53754 * 11 9 7 13 13 C 1.53363 * 103.04195 * 335.96723 * 12 11 9 14 14 H 1.08998 * 110.76365 * 283.12512 * 13 12 11 15 15 C 1.51825 * 115.27726 * 156.45036 * 13 12 11 16 16 C 1.51598 * 107.77169 * 192.84096 * 15 13 12 17 17 C 1.38430 * 118.45948 * 200.65609 * 16 15 13 18 18 C 1.38145 * 120.28114 * 179.22402 * 17 16 15 19 19 C 1.38313 * 120.18256 * 359.75951 * 18 17 16 20 20 C 1.38045 * 119.92297 * 0.58110 * 19 18 17 21 21 C 1.38740 * 121.97364 * 20.08433 * 16 15 13 22 22 N 1.41097 * 121.36201 * 1.68773 * 21 16 15 23 23 C 1.45832 * 115.45578 * 15.33362 * 22 21 16 24 24 H 1.09004 * 110.85351 * 68.68871 * 23 22 21 25 25 H 0.97001 * 120.00134 * 0.02562 * 1 2 3 26 26 H 1.09004 * 110.07210 * 118.30680 * 11 9 7 27 27 H 1.08999 * 110.07411 * 356.76689 * 11 9 7 28 28 H 1.09004 * 110.70167 * 217.58353 * 12 11 9 29 29 H 1.08999 * 110.85330 * 94.43206 * 12 11 9 30 30 H 1.09002 * 109.80439 * 73.27335 * 15 13 12 31 31 H 1.08999 * 109.85160 * 312.43332 * 15 13 12 32 32 H 1.07996 * 119.85960 * 359.24807 * 17 16 15 33 33 H 1.08005 * 119.91071 * 179.78829 * 18 17 16 34 34 H 1.08002 * 120.03591 * 180.29554 * 19 18 17 35 35 H 1.07994 * 120.00103 * 179.81983 * 20 19 18 36 36 H 0.96995 * 122.27050 * 195.33652 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 1 3.8877 -0.6900 0.8904 11 6 4.0475 -0.4991 -1.2753 12 6 4.9491 -1.5382 -1.9937 13 6 5.3723 -2.4749 -0.8555 14 1 6.1501 -2.0152 -0.2457 15 6 5.7823 -3.8724 -1.2844 16 6 5.8537 -4.7360 -0.0405 17 6 6.6035 -5.8987 -0.0868 18 6 6.7075 -6.7054 1.0298 19 6 6.0665 -6.3537 2.2039 20 6 5.3109 -5.1996 2.2569 21 6 5.2027 -4.3875 1.1341 22 7 4.4097 -3.2234 1.2166 23 6 4.0415 -2.6239 -0.0608 24 1 3.3445 -3.2632 -0.6028 25 1 -0.4850 0.8400 -0.0004 26 1 4.6323 0.3801 -1.0046 27 1 3.2181 -0.2128 -1.9219 28 1 5.8188 -1.0529 -2.4368 29 1 4.3857 -2.0827 -2.7515 30 1 6.7590 -3.8389 -1.7672 31 1 5.0433 -4.2795 -1.9745 32 1 7.1096 -6.1761 -0.9996 33 1 7.2913 -7.6130 0.9860 34 1 6.1533 -6.9837 3.0769 35 1 4.8075 -4.9254 3.1722 36 1 4.1287 -2.8473 2.0654 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259643801.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:55 Heat of formation + Delta-G solvation = 17.026637 kcal Electronic energy + Delta-G solvation = -17475.308762 eV Core-core repulsion = 14923.104613 eV Total energy + Delta-G solvation = -2552.204149 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.03666 -37.64905 -33.95294 -33.21710 -31.94708 -29.74490 -28.50481 -27.31132 -24.17912 -23.24091 -22.17509 -21.11518 -19.47271 -19.09040 -16.80268 -16.35273 -15.72500 -15.45637 -14.64553 -14.36692 -13.71617 -13.67728 -13.18751 -13.10138 -12.75609 -12.69092 -12.39123 -11.98503 -11.53314 -11.16816 -11.00954 -10.77713 -10.66254 -10.48271 -10.09282 -10.01965 -9.77412 -9.52123 -9.26155 -9.00660 -8.61114 -8.43972 -6.93060 -6.12189 -4.11911 1.68295 1.91763 3.24759 3.34468 3.35410 4.01164 4.15123 4.37136 4.91596 5.10869 5.19932 5.27650 5.31575 5.37522 5.54973 5.64482 5.81242 5.86633 5.97884 6.03924 6.12331 6.21864 6.28196 6.35453 6.40489 6.48790 6.57393 6.60996 6.79084 6.82895 6.88503 6.92875 7.03157 7.15705 7.35352 7.69916 7.88776 8.35279 8.49475 8.91388 9.49762 11.00679 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.036828 B = 0.006728 C = 0.006093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.112437 B = 4160.585304 C = 4594.059344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.265 1.265 7 C -0.512 4.512 8 H 0.074 0.926 9 C 0.013 3.987 10 H 0.033 0.967 11 C -0.131 4.131 12 C -0.109 4.109 13 C -0.118 4.118 14 H 0.074 0.926 15 C -0.060 4.060 16 C -0.153 4.153 17 C -0.079 4.079 18 C -0.187 4.187 19 C -0.083 4.083 20 C -0.196 4.196 21 C 0.227 3.773 22 N -0.735 5.735 23 C 0.162 3.838 24 H 0.071 0.929 25 H 0.264 0.736 26 H 0.042 0.958 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.916 -7.886 -0.102 15.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.190 1.190 7 C -0.550 4.550 8 H 0.092 0.908 9 C -0.006 4.006 10 H 0.051 0.949 11 C -0.169 4.169 12 C -0.147 4.147 13 C -0.138 4.138 14 H 0.092 0.908 15 C -0.097 4.097 16 C -0.158 4.158 17 C -0.098 4.098 18 C -0.207 4.207 19 C -0.102 4.102 20 C -0.219 4.219 21 C 0.122 3.878 22 N -0.364 5.364 23 C 0.057 3.943 24 H 0.089 0.911 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 12.661 -7.653 -0.240 14.796 hybrid contribution 0.203 1.093 0.395 1.180 sum 12.864 -6.560 0.155 14.440 Atomic orbital electron populations 1.69905 1.06297 1.26968 1.50550 1.24996 0.94632 0.98987 0.94367 0.86930 0.80123 0.83728 0.78528 1.20174 1.22037 1.19010 1.21041 0.88336 0.94490 1.51133 0.90784 1.19682 0.96898 0.90211 0.93839 0.94905 1.22968 0.98220 0.96891 0.98838 1.22106 0.98638 0.97128 0.96868 1.22297 0.98746 0.94388 0.98337 0.90769 1.20350 1.01203 0.93818 0.94346 1.19572 1.02484 0.98226 0.95481 1.20804 0.97527 0.93578 0.97874 1.20739 1.04929 1.01191 0.93847 1.20791 0.96119 0.95861 0.97455 1.20713 1.05871 0.96860 0.98468 1.17947 0.89792 0.86815 0.93213 1.44987 1.55712 1.27248 1.08470 1.21783 0.93412 0.96317 0.82823 0.91145 0.92638 0.93885 0.91013 0.92729 0.91582 0.91470 0.91033 0.86725 0.87076 0.86809 0.86527 0.75997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 2 C 0.07 2.02 5.35 -17.82 -0.10 1.92 16 3 Si 0.88 21.21 24.61 -169.99 -4.18 17.03 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.16 6.43 56.52 0.36 -5.79 16 7 C -0.51 -13.84 8.91 -34.44 -0.31 -14.15 16 8 H 0.07 2.20 7.89 -52.49 -0.41 1.79 16 9 C 0.01 0.29 2.18 -91.01 -0.20 0.09 16 10 H 0.03 0.76 7.26 -51.93 -0.38 0.39 16 11 C -0.13 -2.68 4.52 -24.61 -0.11 -2.79 16 12 C -0.11 -1.84 6.42 -25.37 -0.16 -2.01 16 13 C -0.12 -1.99 2.58 -89.58 -0.23 -2.23 16 14 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 15 C -0.06 -0.90 5.39 -28.04 -0.15 -1.05 16 16 C -0.15 -2.40 5.72 -103.92 -0.59 -3.00 16 17 C -0.08 -1.08 9.65 -39.54 -0.38 -1.47 16 18 C -0.19 -2.42 10.04 -39.59 -0.40 -2.82 16 19 C -0.08 -1.11 10.05 -39.62 -0.40 -1.50 16 20 C -0.20 -2.94 9.90 -39.37 -0.39 -3.33 16 21 C 0.23 3.80 6.39 -83.12 -0.53 3.27 16 22 N -0.74 -13.26 5.78 -50.99 -0.29 -13.55 16 23 C 0.16 3.18 2.66 -67.03 -0.18 3.00 16 24 H 0.07 1.52 7.73 -51.93 -0.40 1.12 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 26 H 0.04 0.85 7.20 -51.93 -0.37 0.48 16 27 H 0.07 1.59 6.66 -51.93 -0.35 1.24 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.08 8.13 -51.93 -0.42 0.65 16 30 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 33 H 0.11 1.17 8.06 -52.48 -0.42 0.75 16 34 H 0.11 1.22 8.06 -52.49 -0.42 0.79 16 35 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.40 7.01 8.90 -40.82 -0.36 6.64 16 LS Contribution 281.61 15.07 4.24 4.24 Total: -1.00 -29.00 281.61 -8.84 -37.84 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -5.25 Total: 6.71 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -4.13 Total: -26.05 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.48 Total: -39.77 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.18 Total: 17.03 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.00 -8.84 -37.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259643801.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.868 kcal (2) G-P(sol) polarization free energy of solvation -29.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds