Wall clock time and date at job start Mon Mar 30 2020 05:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00146 * 2 1 4 4 H 1.48491 * 109.47253 * 240.00077 * 3 2 1 5 5 H 1.48494 * 109.47070 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46976 * 120.00084 * 3 2 1 7 7 C 1.37882 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99720 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.21356 * 60.45452 * 9 7 2 11 11 C 1.54809 * 110.23789 * 298.54484 * 9 7 2 12 12 C 1.55212 * 106.37662 * 244.35056 * 11 9 7 13 13 C 1.53367 * 103.03868 * 24.03662 * 12 11 9 14 14 H 1.09007 * 110.75265 * 76.29468 * 13 12 11 15 15 C 1.51817 * 115.28656 * 203.52667 * 13 12 11 16 16 C 1.51591 * 107.78040 * 167.14025 * 15 13 12 17 17 C 1.38430 * 118.46376 * 159.17630 * 16 15 13 18 18 C 1.38142 * 120.28655 * 181.52667 * 17 16 15 19 19 C 1.38311 * 120.17907 * 359.97438 * 18 17 16 20 20 C 1.38052 * 119.92298 * 359.67677 * 19 18 17 21 21 C 1.38749 * 121.97124 * 340.09170 * 16 15 13 22 22 N 1.41087 * 121.36267 * 358.03604 * 21 16 15 23 23 C 1.45834 * 115.47695 * 344.87963 * 22 21 16 24 24 H 1.09007 * 110.86731 * 291.22199 * 23 22 21 25 25 H 0.96996 * 119.99694 * 359.97438 * 1 2 3 26 26 H 1.09003 * 110.07112 * 125.12050 * 11 9 7 27 27 H 1.09000 * 110.07186 * 3.58390 * 11 9 7 28 28 H 1.08996 * 110.70845 * 265.65182 * 12 11 9 29 29 H 1.09008 * 110.85084 * 142.49422 * 12 11 9 30 30 H 1.09003 * 109.79791 * 286.71616 * 15 13 12 31 31 H 1.09010 * 109.79833 * 47.57090 * 15 13 12 32 32 H 1.08002 * 119.85703 * 1.54550 * 17 16 15 33 33 H 1.07997 * 119.91090 * 179.97438 * 18 17 16 34 34 H 1.08002 * 120.03857 * 179.72207 * 19 18 17 35 35 H 1.07995 * 119.99546 * 180.09406 * 20 19 18 36 36 H 0.97007 * 122.26790 * 164.85681 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6256 -2.5729 -0.8902 11 6 0.3827 -2.6161 1.2757 12 6 0.9484 -3.8160 2.0815 13 6 2.3979 -3.9107 1.5893 14 1 3.0102 -3.1287 2.0385 15 6 3.0486 -5.2732 1.7472 16 6 4.3284 -5.2719 0.9347 17 6 5.3079 -6.1994 1.2452 18 6 6.5016 -6.2113 0.5500 19 6 6.7258 -5.2959 -0.4623 20 6 5.7516 -4.3720 -0.7835 21 6 4.5477 -4.3615 -0.0891 22 7 3.5672 -3.4141 -0.4518 23 6 2.2262 -3.6718 0.0601 24 1 1.7913 -4.5509 -0.4156 25 1 -0.4849 0.8400 0.0004 26 1 -0.6565 -2.8036 1.0053 27 1 0.4574 -1.7016 1.8641 28 1 0.4017 -4.7294 1.8476 29 1 0.9174 -3.6134 3.1522 30 1 3.2781 -5.4533 2.7975 31 1 2.3772 -6.0481 1.3772 32 1 5.1381 -6.9171 2.0343 33 1 7.2618 -6.9374 0.7976 34 1 7.6616 -5.3044 -1.0014 35 1 5.9248 -3.6577 -1.5747 36 1 3.7712 -2.6431 -1.0041 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259643806.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:58 Heat of formation + Delta-G solvation = 14.902772 kcal Electronic energy + Delta-G solvation = -17603.970540 eV Core-core repulsion = 15051.674293 eV Total energy + Delta-G solvation = -2552.296246 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.88232 -37.45171 -33.69329 -33.18964 -31.71923 -29.51592 -28.01934 -26.88021 -24.36155 -23.20799 -22.01880 -21.00638 -19.16306 -18.88140 -16.62763 -16.20256 -15.45558 -15.03652 -14.46496 -14.35686 -13.69857 -13.48839 -13.36672 -12.84230 -12.68791 -12.40259 -11.91300 -11.69841 -11.28591 -10.96316 -10.87907 -10.76577 -10.61623 -10.29709 -10.12282 -9.79757 -9.68431 -9.28487 -9.15363 -8.76510 -8.41434 -8.32348 -6.72797 -6.06668 -4.10693 1.79726 2.04879 3.27561 3.33025 3.35612 4.23412 4.26520 4.39540 5.10356 5.24928 5.26924 5.41336 5.47610 5.60467 5.72269 5.83073 5.94366 6.05893 6.15817 6.20595 6.30695 6.37762 6.41996 6.56569 6.69367 6.78980 6.84117 6.91794 6.93649 7.01783 7.13928 7.26353 7.32635 7.59806 7.79156 7.89955 8.04648 8.39696 8.62578 8.92415 9.54028 11.02117 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.027375 B = 0.007700 C = 0.006404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.580405 B = 3635.487316 C = 4371.299105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.060 0.940 9 C 0.045 3.955 10 H 0.030 0.970 11 C -0.090 4.090 12 C -0.119 4.119 13 C -0.105 4.105 14 H 0.081 0.919 15 C -0.061 4.061 16 C -0.156 4.156 17 C -0.079 4.079 18 C -0.192 4.192 19 C -0.083 4.083 20 C -0.201 4.201 21 C 0.229 3.771 22 N -0.722 5.722 23 C 0.149 3.851 24 H 0.047 0.953 25 H 0.261 0.739 26 H 0.038 0.962 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.024 -9.607 1.793 12.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.078 0.922 9 C 0.026 3.974 10 H 0.048 0.952 11 C -0.128 4.128 12 C -0.157 4.157 13 C -0.125 4.125 14 H 0.100 0.900 15 C -0.098 4.098 16 C -0.161 4.161 17 C -0.098 4.098 18 C -0.212 4.212 19 C -0.102 4.102 20 C -0.224 4.224 21 C 0.123 3.877 22 N -0.352 5.352 23 C 0.044 3.956 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 6.655 -9.449 1.813 11.698 hybrid contribution 0.579 1.316 -0.193 1.451 sum 7.234 -8.132 1.620 11.004 Atomic orbital electron populations 1.69970 1.05850 1.26636 1.49945 1.24959 0.94791 0.98963 0.95102 0.86731 0.79652 0.83454 0.78590 1.20346 1.21352 1.20349 1.21017 0.92872 0.90058 1.51221 0.92211 1.19219 0.91955 0.91609 0.94571 0.95210 1.22374 0.97338 0.95821 0.97304 1.22252 0.94955 0.99375 0.99164 1.22163 0.96602 0.95983 0.97724 0.90025 1.20375 0.93411 0.97955 0.98087 1.19576 0.98356 0.99646 0.98486 1.20788 0.93019 0.97210 0.98734 1.20688 0.98157 1.02131 1.00269 1.20760 0.97841 0.94772 0.96784 1.20681 0.94927 1.03443 1.03338 1.18016 0.88992 0.89245 0.91424 1.45110 1.06937 1.26301 1.56803 1.21796 0.83556 0.98554 0.91731 0.93464 0.92965 0.94289 0.91298 0.93041 0.93028 0.91654 0.91623 0.86922 0.87271 0.87000 0.86680 0.75154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.64 12.27 55.43 0.68 -23.96 16 2 C 0.06 1.71 5.06 -17.82 -0.09 1.62 16 3 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -13.21 7.89 -34.44 -0.27 -13.48 16 8 H 0.06 1.52 6.12 -52.49 -0.32 1.19 16 9 C 0.05 1.07 2.81 -91.01 -0.26 0.81 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.09 -2.01 5.69 -24.61 -0.14 -2.15 16 12 C -0.12 -2.20 6.42 -25.37 -0.16 -2.36 16 13 C -0.11 -1.97 2.54 -89.58 -0.23 -2.20 16 14 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 15 C -0.06 -0.98 5.40 -28.05 -0.15 -1.14 16 16 C -0.16 -2.62 5.72 -103.92 -0.59 -3.22 16 17 C -0.08 -1.16 9.65 -39.55 -0.38 -1.54 16 18 C -0.19 -2.67 10.04 -39.59 -0.40 -3.07 16 19 C -0.08 -1.18 10.05 -39.62 -0.40 -1.58 16 20 C -0.20 -3.24 9.90 -39.37 -0.39 -3.63 16 21 C 0.23 4.11 6.38 -83.13 -0.53 3.58 16 22 N -0.72 -14.03 5.07 -50.98 -0.26 -14.29 16 23 C 0.15 3.03 2.98 -67.02 -0.20 2.83 16 24 H 0.05 0.95 8.07 -51.93 -0.42 0.53 16 25 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 26 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 1.73 7.08 -51.93 -0.37 1.36 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.89 8.14 -51.92 -0.42 0.46 16 30 H 0.06 0.95 8.13 -51.93 -0.42 0.52 16 31 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 32 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.41 8.06 7.29 -40.82 -0.30 7.76 16 LS Contribution 284.82 15.07 4.29 4.29 Total: -1.00 -26.96 284.82 -9.69 -36.65 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.19 Total: 7.02 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: -4.19 Total: -25.53 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.42 Total: -38.24 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -26.96 -9.69 -36.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259643806.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.555 kcal (2) G-P(sol) polarization free energy of solvation -26.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds