Wall clock time and date at job start Mon Mar 30 2020 05:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00146 * 2 1 4 4 H 1.48491 * 109.47253 * 240.00077 * 3 2 1 5 5 H 1.48494 * 109.47070 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46976 * 120.00084 * 3 2 1 7 7 C 1.37882 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99720 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.21356 * 60.45452 * 9 7 2 11 11 C 1.54809 * 110.23789 * 298.54484 * 9 7 2 12 12 C 1.55212 * 106.37662 * 244.35056 * 11 9 7 13 13 C 1.53367 * 103.03868 * 24.03662 * 12 11 9 14 14 H 1.09007 * 110.75265 * 76.29468 * 13 12 11 15 15 C 1.51817 * 115.28656 * 203.52667 * 13 12 11 16 16 C 1.51591 * 107.78040 * 167.14025 * 15 13 12 17 17 C 1.38430 * 118.46376 * 159.17630 * 16 15 13 18 18 C 1.38142 * 120.28655 * 181.52667 * 17 16 15 19 19 C 1.38311 * 120.17907 * 359.97438 * 18 17 16 20 20 C 1.38052 * 119.92298 * 359.67677 * 19 18 17 21 21 C 1.38749 * 121.97124 * 340.09170 * 16 15 13 22 22 N 1.41087 * 121.36267 * 358.03604 * 21 16 15 23 23 C 1.45834 * 115.47695 * 344.87963 * 22 21 16 24 24 H 1.09007 * 110.86731 * 291.22199 * 23 22 21 25 25 H 0.96996 * 119.99694 * 359.97438 * 1 2 3 26 26 H 1.09003 * 110.07112 * 125.12050 * 11 9 7 27 27 H 1.09000 * 110.07186 * 3.58390 * 11 9 7 28 28 H 1.08996 * 110.70845 * 265.65182 * 12 11 9 29 29 H 1.09008 * 110.85084 * 142.49422 * 12 11 9 30 30 H 1.09003 * 109.79791 * 286.71616 * 15 13 12 31 31 H 1.09010 * 109.79833 * 47.57090 * 15 13 12 32 32 H 1.08002 * 119.85703 * 1.54550 * 17 16 15 33 33 H 1.07997 * 119.91090 * 179.97438 * 18 17 16 34 34 H 1.08002 * 120.03857 * 179.72207 * 19 18 17 35 35 H 1.07995 * 119.99546 * 180.09406 * 20 19 18 36 36 H 0.97007 * 122.26790 * 164.85681 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6256 -2.5729 -0.8902 11 6 0.3827 -2.6161 1.2757 12 6 0.9484 -3.8160 2.0815 13 6 2.3979 -3.9107 1.5893 14 1 3.0102 -3.1287 2.0385 15 6 3.0486 -5.2732 1.7472 16 6 4.3284 -5.2719 0.9347 17 6 5.3079 -6.1994 1.2452 18 6 6.5016 -6.2113 0.5500 19 6 6.7258 -5.2959 -0.4623 20 6 5.7516 -4.3720 -0.7835 21 6 4.5477 -4.3615 -0.0891 22 7 3.5672 -3.4141 -0.4518 23 6 2.2262 -3.6718 0.0601 24 1 1.7913 -4.5509 -0.4156 25 1 -0.4849 0.8400 0.0004 26 1 -0.6565 -2.8036 1.0053 27 1 0.4574 -1.7016 1.8641 28 1 0.4017 -4.7294 1.8476 29 1 0.9174 -3.6134 3.1522 30 1 3.2781 -5.4533 2.7975 31 1 2.3772 -6.0481 1.3772 32 1 5.1381 -6.9171 2.0343 33 1 7.2618 -6.9374 0.7976 34 1 7.6616 -5.3044 -1.0014 35 1 5.9248 -3.6577 -1.5747 36 1 3.7712 -2.6431 -1.0041 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259643806.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:58 Heat of formation + Delta-G solvation = 1.552323 kcal Electronic energy + Delta-G solvation = -17604.549458 eV Core-core repulsion = 15051.674293 eV Total energy + Delta-G solvation = -2552.875165 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.26047 -38.87097 -35.26291 -34.75579 -33.32336 -30.91140 -29.45980 -28.48548 -26.18159 -24.71316 -23.24893 -22.34083 -20.87670 -20.40389 -18.18530 -17.78958 -16.98462 -16.46540 -16.24453 -15.73179 -15.26287 -14.84425 -14.71755 -14.38623 -13.99098 -13.88525 -13.37969 -13.27126 -13.00807 -12.76315 -12.46565 -12.24222 -12.13037 -11.82112 -11.73637 -11.43840 -11.25036 -10.97497 -10.85376 -10.45641 -10.41698 -9.48953 -8.13822 -8.07625 -6.21075 0.63309 0.86053 1.38643 1.39667 1.46432 2.40788 2.81493 3.08024 3.20287 3.74025 3.97849 4.07502 4.23221 4.29622 4.45299 4.57027 4.64639 4.71738 4.76480 4.82464 4.89990 4.95382 5.06444 5.09895 5.17615 5.26752 5.36606 5.40310 5.60409 5.62807 5.65684 5.76869 5.84043 5.86031 5.91697 6.18059 6.35805 6.67284 6.89743 7.14454 7.46346 8.95922 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.027375 B = 0.007700 C = 0.006404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.580405 B = 3635.487316 C = 4371.299105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 0.947 3.053 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.060 0.940 9 C 0.039 3.961 10 H -0.005 1.005 11 C -0.085 4.085 12 C -0.107 4.107 13 C -0.095 4.095 14 H 0.054 0.946 15 C -0.054 4.054 16 C -0.173 4.173 17 C -0.080 4.080 18 C -0.185 4.185 19 C -0.084 4.084 20 C -0.213 4.213 21 C 0.198 3.802 22 N -0.736 5.736 23 C 0.156 3.844 24 H 0.048 0.952 25 H 0.259 0.741 26 H 0.028 0.972 27 H 0.035 0.965 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.117 0.883 36 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.127 -11.537 2.752 14.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.773 3.227 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.555 4.555 8 H 0.078 0.922 9 C 0.020 3.980 10 H 0.013 0.987 11 C -0.124 4.124 12 C -0.145 4.145 13 C -0.114 4.114 14 H 0.073 0.927 15 C -0.091 4.091 16 C -0.178 4.178 17 C -0.099 4.099 18 C -0.205 4.205 19 C -0.103 4.103 20 C -0.235 4.235 21 C 0.094 3.906 22 N -0.366 5.366 23 C 0.050 3.950 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.135 0.865 36 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 8.791 -11.408 2.779 14.668 hybrid contribution 0.002 1.857 -0.532 1.932 sum 8.793 -9.551 2.247 13.175 Atomic orbital electron populations 1.70093 1.07107 1.27075 1.51360 1.25670 0.95517 1.02048 0.95228 0.85790 0.78434 0.79845 0.78616 1.19681 1.21286 1.20190 1.21320 0.93061 0.91079 1.50008 0.92177 1.19180 0.92557 0.92615 0.93670 0.98713 1.22189 0.96873 0.96397 0.96922 1.22180 0.94727 0.98290 0.99318 1.22015 0.96354 0.97152 0.95911 0.92749 1.20344 0.93206 0.96053 0.99472 1.19816 0.99333 1.00169 0.98469 1.21127 0.92573 0.96907 0.99254 1.21136 0.98436 1.01885 0.99054 1.21134 0.98325 0.93910 0.96913 1.20887 0.94947 1.04223 1.03493 1.18325 0.89422 0.89911 0.92905 1.45001 1.06939 1.27004 1.57698 1.21546 0.83587 0.96623 0.93293 0.93449 0.93229 0.95273 0.94582 0.90549 0.91441 0.89434 0.90335 0.84139 0.84102 0.84216 0.86476 0.76058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.91 12.27 21.45 0.26 -52.65 16 2 C 0.01 0.78 5.06 84.65 0.43 1.21 16 3 Si 0.95 43.70 29.54 68.60 2.03 45.73 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.52 -27.52 7.89 25.60 0.20 -27.32 16 8 H 0.06 3.14 6.12 -2.91 -0.02 3.12 16 9 C 0.04 1.90 2.81 -11.04 -0.03 1.87 16 10 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 11 C -0.08 -3.94 5.69 31.97 0.18 -3.76 16 12 C -0.11 -3.84 6.42 31.48 0.20 -3.64 16 13 C -0.09 -3.48 2.54 -10.12 -0.03 -3.51 16 14 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 15 C -0.05 -1.59 5.40 29.74 0.16 -1.43 16 16 C -0.17 -5.44 5.72 -19.41 -0.11 -5.55 16 17 C -0.08 -2.05 9.65 22.29 0.22 -1.83 16 18 C -0.19 -4.36 10.04 22.26 0.22 -4.14 16 19 C -0.08 -2.13 10.05 22.24 0.22 -1.91 16 20 C -0.21 -6.57 9.90 22.40 0.22 -6.35 16 21 C 0.20 6.94 6.38 37.95 0.24 7.18 16 22 N -0.74 -29.10 5.07 -315.22 -1.60 -30.70 16 23 C 0.16 6.42 2.98 45.94 0.14 6.55 16 24 H 0.05 1.93 8.07 -2.38 -0.02 1.91 16 25 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 26 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.04 1.87 7.08 -2.39 -0.02 1.85 16 28 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 30 H 0.09 2.20 8.13 -2.39 -0.02 2.19 16 31 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 32 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 33 H 0.14 2.44 8.06 -2.91 -0.02 2.41 16 34 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 35 H 0.12 3.43 8.06 -2.91 -0.02 3.41 16 36 H 0.40 16.45 7.29 -92.70 -0.68 15.77 16 Total: -1.00 -59.74 284.82 3.35 -56.38 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.39 Total: 23.85 kcal Atomic # 6 Polarization: -44.88 SS G_CDS: 2.27 Total: -42.61 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -1.33 Total: -83.35 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -59.74 3.35 -56.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259643806.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.937 kcal (2) G-P(sol) polarization free energy of solvation -59.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds