Wall clock time and date at job start Mon Mar 30 2020 05:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00230 * 2 1 4 4 H 1.48497 * 109.47089 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47193 * 300.00439 * 3 2 1 6 6 H 1.48501 * 109.46840 * 60.00624 * 3 2 1 7 7 C 1.37879 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00614 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99761 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.16677 * 59.30071 * 9 7 2 11 11 C 1.54299 * 110.25525 * 297.46545 * 9 7 2 12 12 C 1.54501 * 106.43036 * 241.73886 * 11 9 7 13 13 C 1.55949 * 103.69124 * 24.67849 * 12 11 9 14 14 H 1.09001 * 113.57880 * 198.73582 * 13 12 11 15 15 C 1.52901 * 106.15617 * 74.47247 * 13 12 11 16 16 C 1.49990 * 112.61547 * 205.00821 * 15 13 12 17 17 C 1.38621 * 119.03008 * 202.54673 * 16 15 13 18 18 C 1.38086 * 120.35845 * 180.74847 * 17 16 15 19 19 C 1.38310 * 120.21225 * 0.14018 * 18 17 16 20 20 C 1.38045 * 119.84353 * 359.59998 * 19 18 17 21 21 C 1.38536 * 121.59383 * 22.71399 * 16 15 13 22 22 N 1.38122 * 119.91727 * 357.47901 * 21 16 15 23 23 C 1.44649 * 122.67115 * 9.41245 * 22 21 16 24 24 H 1.08997 * 109.17889 * 204.60921 * 23 22 21 25 25 H 0.96997 * 119.99526 * 359.97438 * 1 2 3 26 26 H 1.09005 * 110.06988 * 0.97876 * 11 9 7 27 27 H 1.09001 * 110.06685 * 122.49928 * 11 9 7 28 28 H 1.08996 * 110.58354 * 266.12631 * 12 11 9 29 29 H 1.09007 * 110.58053 * 143.22998 * 12 11 9 30 30 H 1.08997 * 108.85244 * 325.81655 * 15 13 12 31 31 H 1.09000 * 108.85863 * 84.30583 * 15 13 12 32 32 H 1.08000 * 119.81980 * 0.76785 * 17 16 15 33 33 H 1.08006 * 119.89344 * 180.11774 * 18 17 16 34 34 H 1.08007 * 120.07414 * 179.62484 * 19 18 17 35 35 H 1.08002 * 119.99928 * 179.97438 * 20 19 18 36 36 H 0.97008 * 118.14005 * 188.99214 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6104 -2.5632 -0.8801 11 6 0.4062 -2.6282 1.2842 12 6 0.9379 -3.8701 2.0339 13 6 2.4052 -4.0088 1.5242 14 1 2.8327 -4.9977 1.6899 15 6 3.2019 -2.9011 2.2143 16 6 4.4223 -2.5002 1.4399 17 6 5.4711 -1.8869 2.1073 18 6 6.6011 -1.4926 1.4187 19 6 6.6944 -1.7042 0.0551 20 6 5.6574 -2.3191 -0.6172 21 6 4.5232 -2.7253 0.0767 22 7 3.5060 -3.3791 -0.5907 23 6 2.2319 -3.6763 0.0263 24 1 1.7797 -4.5296 -0.4790 25 1 -0.4849 0.8401 0.0004 26 1 0.5268 -1.7384 1.9021 27 1 -0.6443 -2.7671 1.0286 28 1 0.3562 -4.7539 1.7722 29 1 0.9206 -3.7039 3.1111 30 1 2.5597 -2.0288 2.3360 31 1 3.5108 -3.2507 3.1994 32 1 5.4040 -1.7168 3.1718 33 1 7.4146 -1.0170 1.9466 34 1 7.5768 -1.3894 -0.4824 35 1 5.7274 -2.4852 -1.6821 36 1 3.6579 -3.6412 -1.5123 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259643811.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:00 Heat of formation + Delta-G solvation = 20.888356 kcal Electronic energy + Delta-G solvation = -18272.621230 eV Core-core repulsion = 15720.584538 eV Total energy + Delta-G solvation = -2552.036692 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.03930 -37.28505 -33.88199 -32.69817 -31.46443 -29.26968 -28.06732 -26.81224 -24.37631 -23.49540 -21.84328 -21.04998 -19.12666 -17.80282 -16.95175 -16.36411 -15.24596 -15.19553 -14.33110 -14.29655 -13.64144 -13.33003 -12.86276 -12.63968 -12.50459 -12.00691 -11.73909 -11.69450 -11.18795 -10.89322 -10.75686 -10.67955 -10.41387 -10.10772 -10.01833 -9.66035 -9.60840 -9.52635 -8.98070 -8.54289 -8.29290 -7.96551 -6.44924 -5.92986 -3.91886 2.11339 2.37977 3.34742 3.43638 3.53054 4.32033 4.54286 4.59534 5.24862 5.42184 5.50690 5.61869 5.62894 5.65041 5.84700 6.02203 6.10570 6.15122 6.24985 6.29502 6.47541 6.51290 6.59477 6.68193 6.79260 6.87092 7.00838 7.08789 7.15350 7.20005 7.30485 7.31829 7.59489 7.70519 7.90073 8.06318 8.28070 8.45611 8.62017 9.13566 9.71670 11.16879 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.017900 B = 0.013434 C = 0.009417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.897688 B = 2083.810184 C = 2972.576127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.876 3.124 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.497 4.497 8 H 0.074 0.926 9 C 0.032 3.968 10 H 0.026 0.974 11 C -0.092 4.092 12 C -0.124 4.124 13 C -0.096 4.096 14 H 0.067 0.933 15 C -0.060 4.060 16 C -0.133 4.133 17 C -0.084 4.084 18 C -0.196 4.196 19 C -0.085 4.085 20 C -0.213 4.213 21 C 0.256 3.744 22 N -0.714 5.714 23 C 0.156 3.844 24 H 0.058 0.942 25 H 0.255 0.745 26 H 0.066 0.934 27 H 0.038 0.962 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.050 0.950 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.088 -6.903 2.236 10.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.705 3.295 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.535 4.535 8 H 0.092 0.908 9 C 0.012 3.988 10 H 0.044 0.956 11 C -0.131 4.131 12 C -0.162 4.162 13 C -0.115 4.115 14 H 0.085 0.915 15 C -0.097 4.097 16 C -0.138 4.138 17 C -0.103 4.103 18 C -0.216 4.216 19 C -0.103 4.103 20 C -0.235 4.235 21 C 0.150 3.850 22 N -0.335 5.335 23 C 0.050 3.950 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 6.722 -6.821 2.372 9.866 hybrid contribution 0.351 1.163 -0.445 1.294 sum 7.073 -5.658 1.927 9.261 Atomic orbital electron populations 1.70005 1.05799 1.25973 1.51633 1.24927 0.94630 0.98769 0.95752 0.86748 0.80899 0.84587 0.77315 1.19349 1.21431 1.21293 1.21439 0.93895 0.89474 1.48718 0.90766 1.19549 0.92218 0.92936 0.94081 0.95568 1.22175 0.97719 0.95070 0.98124 1.22758 0.94757 0.99431 0.99296 1.22292 0.96068 0.97118 0.96003 0.91476 1.20190 0.94179 0.99453 0.95899 1.19148 0.97062 1.05236 0.92351 1.20767 0.93095 0.97533 0.98876 1.20576 0.99044 1.07394 0.94635 1.20629 0.97465 0.97939 0.94298 1.20457 0.95519 1.08627 0.98945 1.16998 0.87288 0.89796 0.90948 1.43576 1.13054 1.62220 1.14693 1.21262 0.83959 0.97836 0.91924 0.92375 0.93494 0.91530 0.94323 0.93180 0.92825 0.88632 0.93146 0.87288 0.87645 0.87355 0.87126 0.78171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.60 12.42 55.43 0.69 -24.91 16 2 C 0.06 1.65 5.09 -17.82 -0.09 1.56 16 3 Si 0.88 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.27 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 7 C -0.50 -13.02 6.23 -34.44 -0.21 -13.23 16 8 H 0.07 1.97 3.98 -52.49 -0.21 1.76 16 9 C 0.03 0.75 2.73 -90.96 -0.25 0.50 16 10 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 11 C -0.09 -2.05 4.96 -25.26 -0.13 -2.17 16 12 C -0.12 -2.22 6.16 -24.37 -0.15 -2.37 16 13 C -0.10 -1.72 3.86 -88.35 -0.34 -2.06 16 14 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 15 C -0.06 -1.15 4.29 -28.28 -0.12 -1.27 16 16 C -0.13 -2.63 4.78 -104.71 -0.50 -3.13 16 17 C -0.08 -1.53 9.64 -39.50 -0.38 -1.91 16 18 C -0.20 -3.36 10.03 -39.61 -0.40 -3.76 16 19 C -0.08 -1.44 10.05 -39.63 -0.40 -1.84 16 20 C -0.21 -3.85 9.83 -39.36 -0.39 -4.24 16 21 C 0.26 5.03 4.41 -84.63 -0.37 4.65 16 22 N -0.71 -13.42 4.81 -52.95 -0.25 -13.68 16 23 C 0.16 3.04 3.42 -68.05 -0.23 2.80 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.07 1.66 6.66 -51.93 -0.35 1.31 16 27 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.89 8.02 -51.93 -0.42 0.48 16 30 H 0.10 2.09 5.49 -51.93 -0.29 1.81 16 31 H 0.05 0.85 8.09 -51.93 -0.42 0.43 16 32 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 34 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 35 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.39 6.39 8.75 -40.82 -0.36 6.03 16 LS Contribution 275.82 15.07 4.16 4.16 Total: -1.00 -28.79 275.82 -9.37 -38.16 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -4.97 Total: 5.78 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -3.96 Total: -26.48 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.43 Total: -38.59 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.79 -9.37 -38.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259643811.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.044 kcal (2) G-P(sol) polarization free energy of solvation -28.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds