Wall clock time and date at job start Mon Mar 30 2020 05:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00230 * 2 1 4 4 H 1.48497 * 109.47089 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47193 * 300.00439 * 3 2 1 6 6 H 1.48501 * 109.46840 * 60.00624 * 3 2 1 7 7 C 1.37879 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00614 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99761 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.16677 * 59.30071 * 9 7 2 11 11 C 1.54299 * 110.25525 * 297.46545 * 9 7 2 12 12 C 1.54501 * 106.43036 * 241.73886 * 11 9 7 13 13 C 1.55949 * 103.69124 * 24.67849 * 12 11 9 14 14 H 1.09001 * 113.57880 * 198.73582 * 13 12 11 15 15 C 1.52901 * 106.15617 * 74.47247 * 13 12 11 16 16 C 1.49990 * 112.61547 * 205.00821 * 15 13 12 17 17 C 1.38621 * 119.03008 * 202.54673 * 16 15 13 18 18 C 1.38086 * 120.35845 * 180.74847 * 17 16 15 19 19 C 1.38310 * 120.21225 * 0.14018 * 18 17 16 20 20 C 1.38045 * 119.84353 * 359.59998 * 19 18 17 21 21 C 1.38536 * 121.59383 * 22.71399 * 16 15 13 22 22 N 1.38122 * 119.91727 * 357.47901 * 21 16 15 23 23 C 1.44649 * 122.67115 * 9.41245 * 22 21 16 24 24 H 1.08997 * 109.17889 * 204.60921 * 23 22 21 25 25 H 0.96997 * 119.99526 * 359.97438 * 1 2 3 26 26 H 1.09005 * 110.06988 * 0.97876 * 11 9 7 27 27 H 1.09001 * 110.06685 * 122.49928 * 11 9 7 28 28 H 1.08996 * 110.58354 * 266.12631 * 12 11 9 29 29 H 1.09007 * 110.58053 * 143.22998 * 12 11 9 30 30 H 1.08997 * 108.85244 * 325.81655 * 15 13 12 31 31 H 1.09000 * 108.85863 * 84.30583 * 15 13 12 32 32 H 1.08000 * 119.81980 * 0.76785 * 17 16 15 33 33 H 1.08006 * 119.89344 * 180.11774 * 18 17 16 34 34 H 1.08007 * 120.07414 * 179.62484 * 19 18 17 35 35 H 1.08002 * 119.99928 * 179.97438 * 20 19 18 36 36 H 0.97008 * 118.14005 * 188.99214 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6104 -2.5632 -0.8801 11 6 0.4062 -2.6282 1.2842 12 6 0.9379 -3.8701 2.0339 13 6 2.4052 -4.0088 1.5242 14 1 2.8327 -4.9977 1.6899 15 6 3.2019 -2.9011 2.2143 16 6 4.4223 -2.5002 1.4399 17 6 5.4711 -1.8869 2.1073 18 6 6.6011 -1.4926 1.4187 19 6 6.6944 -1.7042 0.0551 20 6 5.6574 -2.3191 -0.6172 21 6 4.5232 -2.7253 0.0767 22 7 3.5060 -3.3791 -0.5907 23 6 2.2319 -3.6763 0.0263 24 1 1.7797 -4.5296 -0.4790 25 1 -0.4849 0.8401 0.0004 26 1 0.5268 -1.7384 1.9021 27 1 -0.6443 -2.7671 1.0286 28 1 0.3562 -4.7539 1.7722 29 1 0.9206 -3.7039 3.1111 30 1 2.5597 -2.0288 2.3360 31 1 3.5108 -3.2507 3.1994 32 1 5.4040 -1.7168 3.1718 33 1 7.4146 -1.0170 1.9466 34 1 7.5768 -1.3894 -0.4824 35 1 5.7274 -2.4852 -1.6821 36 1 3.6579 -3.6412 -1.5123 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259643811.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:00 Heat of formation + Delta-G solvation = 5.395688 kcal Electronic energy + Delta-G solvation = -18273.293042 eV Core-core repulsion = 15720.584538 eV Total energy + Delta-G solvation = -2552.708504 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.52139 -38.75802 -35.35553 -34.62362 -33.01734 -30.73917 -29.73367 -28.42418 -26.07525 -25.16901 -23.23728 -22.51561 -20.86545 -19.28256 -18.61420 -17.94723 -16.88970 -16.79661 -16.27042 -15.73902 -15.09399 -14.81136 -14.43785 -14.25030 -14.03721 -13.49663 -13.44471 -13.32266 -12.92898 -12.82256 -12.35230 -12.28375 -12.04437 -11.75669 -11.61864 -11.37532 -11.20542 -11.08576 -10.63111 -10.45376 -10.31083 -9.35938 -8.05370 -7.89527 -6.05374 0.73171 0.99505 1.31991 1.36998 1.48292 2.45518 2.90979 3.20256 3.28397 3.82119 4.06699 4.16271 4.25795 4.33952 4.49855 4.63773 4.66236 4.73263 4.86629 4.88745 4.98949 5.00900 5.11665 5.14301 5.29070 5.38292 5.40785 5.49357 5.59601 5.74363 5.78048 5.84850 5.94377 5.97110 6.01298 6.28166 6.50408 6.84074 7.07174 7.16544 7.59113 9.05068 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.017900 B = 0.013434 C = 0.009417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.897688 B = 2083.810184 C = 2972.576127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.925 3.075 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.485 4.485 8 H 0.074 0.926 9 C 0.024 3.976 10 H -0.009 1.009 11 C -0.085 4.085 12 C -0.112 4.112 13 C -0.087 4.087 14 H 0.096 0.904 15 C -0.058 4.058 16 C -0.160 4.160 17 C -0.096 4.096 18 C -0.200 4.200 19 C -0.089 4.089 20 C -0.224 4.224 21 C 0.232 3.768 22 N -0.716 5.716 23 C 0.158 3.842 24 H 0.079 0.921 25 H 0.252 0.748 26 H 0.031 0.969 27 H 0.022 0.978 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.125 0.875 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.126 0.874 36 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.020 -7.973 2.720 12.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.187 4.187 3 Si 0.753 3.247 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.213 1.213 7 C -0.524 4.524 8 H 0.091 0.909 9 C 0.005 3.995 10 H 0.009 0.991 11 C -0.124 4.124 12 C -0.149 4.149 13 C -0.106 4.106 14 H 0.114 0.886 15 C -0.095 4.095 16 C -0.165 4.165 17 C -0.115 4.115 18 C -0.220 4.220 19 C -0.107 4.107 20 C -0.246 4.246 21 C 0.127 3.873 22 N -0.339 5.339 23 C 0.052 3.948 24 H 0.097 0.903 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.041 0.959 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.156 0.844 35 H 0.144 0.856 36 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 8.678 -7.892 2.852 12.071 hybrid contribution -0.178 1.523 -0.611 1.650 sum 8.501 -6.369 2.241 10.856 Atomic orbital electron populations 1.70109 1.06796 1.26092 1.53706 1.25531 0.95235 1.01327 0.96642 0.85984 0.79550 0.82078 0.77067 1.19671 1.21461 1.21285 1.21743 0.94000 0.90510 1.46126 0.90854 1.19559 0.92891 0.93934 0.93161 0.99093 1.21948 0.96825 0.96048 0.97548 1.22663 0.94888 0.97874 0.99518 1.22306 0.95801 0.98081 0.94433 0.88612 1.20131 0.93653 0.98444 0.97298 1.19388 0.97806 1.06494 0.92803 1.21093 0.93186 0.97223 0.99960 1.20976 0.99362 1.06661 0.95002 1.21053 0.98106 0.96965 0.94587 1.20790 0.95431 1.08475 0.99951 1.17291 0.88050 0.90648 0.91337 1.43538 1.12598 1.62492 1.15243 1.21131 0.83567 0.96406 0.93716 0.90267 0.93910 0.94996 0.95874 0.90646 0.91389 0.92243 0.90984 0.85702 0.85008 0.84408 0.85584 0.77179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.67 12.42 21.45 0.27 -54.41 16 2 C 0.01 0.53 5.09 84.66 0.43 0.96 16 3 Si 0.92 45.94 29.54 68.60 2.03 47.97 16 4 H -0.27 -13.50 7.11 99.48 0.71 -12.79 16 5 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 7 C -0.49 -25.79 6.23 25.60 0.16 -25.63 16 8 H 0.07 3.90 3.98 -2.91 -0.01 3.89 16 9 C 0.02 1.16 2.73 -11.02 -0.03 1.13 16 10 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 11 C -0.08 -3.83 4.96 31.55 0.16 -3.68 16 12 C -0.11 -3.77 6.16 32.13 0.20 -3.57 16 13 C -0.09 -2.93 3.86 -9.32 -0.04 -2.97 16 14 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 15 C -0.06 -2.13 4.29 29.59 0.13 -2.01 16 16 C -0.16 -6.08 4.78 -19.92 -0.10 -6.18 16 17 C -0.10 -3.29 9.64 22.33 0.22 -3.08 16 18 C -0.20 -6.27 10.03 22.25 0.22 -6.05 16 19 C -0.09 -2.75 10.05 22.24 0.22 -2.53 16 20 C -0.22 -7.63 9.83 22.41 0.22 -7.41 16 21 C 0.23 8.76 4.41 38.41 0.17 8.93 16 22 N -0.72 -25.94 4.81 -321.43 -1.55 -27.48 16 23 C 0.16 5.95 3.42 45.90 0.16 6.11 16 24 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 25 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 26 H 0.03 1.63 6.66 -2.38 -0.02 1.61 16 27 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.07 2.12 8.02 -2.38 -0.02 2.10 16 30 H 0.06 2.61 5.49 -2.39 -0.01 2.59 16 31 H 0.07 2.26 8.09 -2.39 -0.02 2.24 16 32 H 0.13 3.74 8.06 -2.91 -0.02 3.71 16 33 H 0.13 3.36 8.06 -2.91 -0.02 3.33 16 34 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 35 H 0.13 3.77 8.06 -2.91 -0.02 3.74 16 36 H 0.40 12.53 8.75 -92.70 -0.81 11.72 16 Total: -1.00 -62.67 275.82 3.13 -59.54 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.27 Total: 20.36 kcal Atomic # 6 Polarization: -48.09 SS G_CDS: 2.12 Total: -45.97 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -1.28 Total: -81.89 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -62.67 3.13 -59.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259643811.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.931 kcal (2) G-P(sol) polarization free energy of solvation -62.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds